Wall clock time and date at job start Mon Mar 30 2020 04:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09013 * 109.46887 * 2 1 4 4 C 1.50700 * 109.47078 * 240.00236 * 2 1 3 5 5 H 1.07996 * 119.99757 * 245.32554 * 4 2 1 6 6 C 1.37880 * 120.00193 * 65.32354 * 4 2 1 7 7 N 1.31507 * 119.99821 * 6.83775 * 6 4 2 8 8 Si 1.86800 * 119.99951 * 186.83868 * 6 4 2 9 9 H 1.48500 * 109.46890 * 89.39646 * 8 6 4 10 10 H 1.48493 * 109.47196 * 209.39945 * 8 6 4 11 11 H 1.48509 * 109.46729 * 329.39795 * 8 6 4 12 12 N 1.46496 * 109.47620 * 119.99695 * 2 1 3 13 13 C 1.33400 * 116.38969 * 59.97845 * 12 2 1 14 14 O 1.21224 * 118.64603 * 348.49435 * 13 12 2 15 15 C 1.50290 * 122.70490 * 168.47193 * 13 12 2 16 16 N 1.46988 * 109.69555 * 63.27515 * 15 13 12 17 17 C 1.34788 * 117.72078 * 288.69586 * 16 15 13 18 18 O 1.21281 * 121.18122 * 180.23600 * 17 16 15 19 19 C 1.51256 * 117.63919 * 359.96862 * 17 16 15 20 20 C 1.33506 * 116.39719 * 240.00583 * 12 2 1 21 21 O 1.21220 * 118.86389 * 11.76102 * 20 12 2 22 22 H 1.09004 * 109.46608 * 291.92354 * 1 2 3 23 23 H 1.08997 * 109.47110 * 51.92168 * 1 2 3 24 24 H 1.08997 * 109.47114 * 171.92238 * 1 2 3 25 25 H 0.97003 * 120.00129 * 179.97438 * 7 6 4 26 26 H 1.08993 * 109.46338 * 183.34936 * 15 13 12 27 27 H 1.08995 * 109.46610 * 303.34061 * 15 13 12 28 28 H 0.97009 * 121.13572 * 108.48268 * 16 15 13 29 29 H 1.08997 * 109.52351 * 191.10603 * 19 17 16 30 30 H 1.09001 * 109.51911 * 311.30702 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5804 -1.6359 -1.1337 6 6 1.7921 -0.1787 -2.4798 7 7 1.2448 1.0116 -2.5937 8 14 2.2442 -1.1493 -4.0105 9 1 1.0972 -2.0027 -4.4122 10 1 2.5726 -0.2103 -5.1130 11 1 3.4223 -2.0066 -3.7230 12 7 2.0185 -0.6905 1.1961 13 6 1.6525 -1.9657 1.3356 14 8 0.7899 -2.4059 0.6064 15 6 2.2659 -2.8793 2.3593 16 7 1.9710 -2.3791 3.7096 17 6 2.6006 -1.2581 4.1144 18 8 2.4072 -0.7929 5.2176 19 6 3.5613 -0.6044 3.1462 20 6 2.7800 0.0264 2.0260 21 8 2.8444 1.2269 1.8711 22 1 -0.3633 0.3837 0.9534 23 1 -0.3633 0.6338 -0.8089 24 1 -0.3633 -1.0174 -0.1444 25 1 1.0761 1.3858 -3.4726 26 1 1.8527 -3.8814 2.2457 27 1 3.3458 -2.9131 2.2153 28 1 1.3425 -2.8384 4.2885 29 1 4.1368 0.1619 3.6655 30 1 4.2375 -1.3568 2.7402 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261086039.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:26 Heat of formation + Delta-G solvation = -85.393806 kcal Electronic energy + Delta-G solvation = -17991.021220 eV Core-core repulsion = 14980.430820 eV Total energy + Delta-G solvation = -3010.590400 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.094 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.46976 -39.23286 -38.40889 -35.48329 -34.82216 -32.91949 -30.81595 -29.40506 -27.44567 -25.24371 -23.47267 -21.80477 -20.80611 -18.88220 -17.80809 -17.11737 -16.90444 -16.51728 -15.63912 -14.96620 -14.62038 -14.37844 -14.13386 -14.06727 -13.41608 -12.99449 -12.83595 -12.47014 -12.12153 -11.76664 -11.39893 -11.05953 -10.84421 -10.67107 -10.29559 -10.22944 -10.09835 -9.63742 -9.44656 -8.90185 -8.53811 -8.38426 -6.14178 -4.18263 1.77226 2.30973 3.01216 3.19446 3.26581 3.31601 3.32988 3.36239 4.20987 4.24157 4.36167 4.70900 4.89774 4.90455 5.20871 5.35723 5.55965 6.28064 6.46073 6.75020 6.76489 6.94116 6.96898 7.32666 7.53356 7.79252 7.85091 7.92064 8.05321 8.28880 8.36839 8.79067 9.44642 10.94707 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.036297 B = 0.008336 C = 0.007721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.227066 B = 3358.195904 C = 3625.400334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.237 3.763 3 H 0.079 0.921 4 C -0.520 4.520 5 H 0.058 0.942 6 C 0.068 3.932 7 N -0.885 5.885 8 Si 0.901 3.099 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.552 5.552 13 C 0.502 3.498 14 O -0.461 6.461 15 C 0.084 3.916 16 N -0.720 5.720 17 C 0.528 3.472 18 O -0.522 6.522 19 C -0.173 4.173 20 C 0.528 3.472 21 O -0.487 6.487 22 H 0.008 0.992 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.265 0.735 26 H 0.128 0.872 27 H 0.105 0.895 28 H 0.413 0.587 29 H 0.137 0.863 30 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.029 -8.505 9.150 13.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.139 3.861 3 H 0.097 0.903 4 C -0.559 4.559 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.522 5.522 8 Si 0.729 3.271 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.200 1.200 12 N -0.293 5.293 13 C 0.287 3.713 14 O -0.330 6.330 15 C -0.043 4.043 16 N -0.378 5.378 17 C 0.313 3.687 18 O -0.397 6.397 19 C -0.216 4.216 20 C 0.315 3.685 21 O -0.360 6.360 22 H 0.027 0.973 23 H 0.093 0.907 24 H 0.085 0.915 25 H 0.074 0.926 26 H 0.146 0.854 27 H 0.123 0.877 28 H 0.251 0.749 29 H 0.155 0.845 30 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.552 -7.625 9.025 12.337 hybrid contribution 0.046 -0.768 -0.785 1.099 sum 3.598 -8.393 8.241 12.300 Atomic orbital electron populations 1.22171 0.97122 1.02656 0.98641 1.19483 0.92424 0.95170 0.79035 0.90297 1.21022 1.36674 1.08175 0.89981 0.92414 1.24841 0.95019 0.94689 0.98964 1.69943 1.43028 1.15045 1.24215 0.86450 0.78751 0.79699 0.82205 1.20419 1.21161 1.19956 1.46520 1.45397 1.12474 1.24889 1.20522 0.83262 0.82361 0.85117 1.90722 1.26871 1.72933 1.42493 1.22130 1.03026 0.98885 0.80305 1.46035 1.46952 1.28349 1.16437 1.20395 0.80830 0.80125 0.87334 1.90780 1.64000 1.63271 1.21652 1.22400 0.98823 1.04191 0.96148 1.19682 0.79116 0.87555 0.82165 1.90744 1.60607 1.14169 1.70436 0.97337 0.90732 0.91532 0.92552 0.85430 0.87695 0.74861 0.84508 0.85595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 8.61 37.16 0.32 -3.37 16 2 C 0.24 6.00 2.25 -69.08 -0.16 5.84 16 3 H 0.08 2.25 6.52 -51.92 -0.34 1.91 16 4 C -0.52 -13.93 7.54 -34.44 -0.26 -14.19 16 5 H 0.06 1.51 7.37 -52.49 -0.39 1.13 16 6 C 0.07 1.86 5.27 -17.82 -0.09 1.77 16 7 N -0.89 -25.19 12.09 55.43 0.67 -24.52 16 8 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 12 N -0.55 -11.16 2.48 -110.46 -0.27 -11.44 16 13 C 0.50 8.78 6.35 -11.80 -0.07 8.70 16 14 O -0.46 -9.67 13.32 5.61 0.07 -9.59 16 15 C 0.08 0.89 6.32 -5.13 -0.03 0.85 16 16 N -0.72 -7.68 5.56 -61.13 -0.34 -8.02 16 17 C 0.53 7.11 7.39 -10.71 -0.08 7.04 16 18 O -0.52 -8.79 17.99 5.56 0.10 -8.69 16 19 C -0.17 -2.20 5.50 -28.89 -0.16 -2.36 16 20 C 0.53 9.84 7.02 -11.68 -0.08 9.76 16 21 O -0.49 -10.98 15.93 5.61 0.09 -10.89 16 22 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 23 H 0.07 1.99 6.99 -51.93 -0.36 1.63 16 24 H 0.07 1.68 5.75 -51.93 -0.30 1.38 16 25 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 26 H 0.13 1.00 8.09 -51.93 -0.42 0.58 16 27 H 0.11 0.82 6.59 -51.93 -0.34 0.47 16 28 H 0.41 3.62 8.96 -40.82 -0.37 3.25 16 29 H 0.14 1.62 8.10 -51.93 -0.42 1.20 16 30 H 0.13 1.11 6.64 -51.93 -0.34 0.77 16 LS Contribution 255.93 15.07 3.86 3.86 Total: -1.00 -34.19 255.93 -4.30 -38.49 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -2.84 Total: 0.71 kcal Atomic # 6 Polarization: 14.65 SS G_CDS: -0.62 Total: 14.03 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: 0.06 Total: -43.97 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: 0.26 Total: -29.17 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -34.19 -4.30 -38.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261086039.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.902 kcal (2) G-P(sol) polarization free energy of solvation -34.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds