Wall clock time and date at job start Mon Mar 30 2020 04:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09013 * 109.46887 * 2 1 4 4 C 1.50700 * 109.47078 * 240.00236 * 2 1 3 5 5 H 1.07996 * 119.99757 * 245.32554 * 4 2 1 6 6 C 1.37880 * 120.00193 * 65.32354 * 4 2 1 7 7 N 1.31507 * 119.99821 * 6.83775 * 6 4 2 8 8 Si 1.86800 * 119.99951 * 186.83868 * 6 4 2 9 9 H 1.48500 * 109.46890 * 89.39646 * 8 6 4 10 10 H 1.48493 * 109.47196 * 209.39945 * 8 6 4 11 11 H 1.48509 * 109.46729 * 329.39795 * 8 6 4 12 12 N 1.46496 * 109.47620 * 119.99695 * 2 1 3 13 13 C 1.33400 * 116.38969 * 59.97845 * 12 2 1 14 14 O 1.21224 * 118.64603 * 348.49435 * 13 12 2 15 15 C 1.50290 * 122.70490 * 168.47193 * 13 12 2 16 16 N 1.46988 * 109.69555 * 63.27515 * 15 13 12 17 17 C 1.34788 * 117.72078 * 288.69586 * 16 15 13 18 18 O 1.21281 * 121.18122 * 180.23600 * 17 16 15 19 19 C 1.51256 * 117.63919 * 359.96862 * 17 16 15 20 20 C 1.33506 * 116.39719 * 240.00583 * 12 2 1 21 21 O 1.21220 * 118.86389 * 11.76102 * 20 12 2 22 22 H 1.09004 * 109.46608 * 291.92354 * 1 2 3 23 23 H 1.08997 * 109.47110 * 51.92168 * 1 2 3 24 24 H 1.08997 * 109.47114 * 171.92238 * 1 2 3 25 25 H 0.97003 * 120.00129 * 179.97438 * 7 6 4 26 26 H 1.08993 * 109.46338 * 183.34936 * 15 13 12 27 27 H 1.08995 * 109.46610 * 303.34061 * 15 13 12 28 28 H 0.97009 * 121.13572 * 108.48268 * 16 15 13 29 29 H 1.08997 * 109.52351 * 191.10603 * 19 17 16 30 30 H 1.09001 * 109.51911 * 311.30702 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5804 -1.6359 -1.1337 6 6 1.7921 -0.1787 -2.4798 7 7 1.2448 1.0116 -2.5937 8 14 2.2442 -1.1493 -4.0105 9 1 1.0972 -2.0027 -4.4122 10 1 2.5726 -0.2103 -5.1130 11 1 3.4223 -2.0066 -3.7230 12 7 2.0185 -0.6905 1.1961 13 6 1.6525 -1.9657 1.3356 14 8 0.7899 -2.4059 0.6064 15 6 2.2659 -2.8793 2.3593 16 7 1.9710 -2.3791 3.7096 17 6 2.6006 -1.2581 4.1144 18 8 2.4072 -0.7929 5.2176 19 6 3.5613 -0.6044 3.1462 20 6 2.7800 0.0264 2.0260 21 8 2.8444 1.2269 1.8711 22 1 -0.3633 0.3837 0.9534 23 1 -0.3633 0.6338 -0.8089 24 1 -0.3633 -1.0174 -0.1444 25 1 1.0761 1.3858 -3.4726 26 1 1.8527 -3.8814 2.2457 27 1 3.3458 -2.9131 2.2153 28 1 1.3425 -2.8384 4.2885 29 1 4.1368 0.1619 3.6655 30 1 4.2375 -1.3568 2.7402 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261086039.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:25 Heat of formation + Delta-G solvation = -113.417360 kcal Electronic energy + Delta-G solvation = -17992.236413 eV Core-core repulsion = 14980.430820 eV Total energy + Delta-G solvation = -3011.805593 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.86919 -40.44747 -39.91107 -36.69296 -36.47961 -34.76942 -32.30362 -30.94200 -28.60222 -27.34871 -24.87514 -23.60601 -21.94872 -20.29932 -19.11307 -18.38703 -18.27605 -18.06307 -17.32010 -16.57213 -16.03079 -15.77344 -15.63363 -15.42534 -14.71989 -14.61550 -14.23482 -13.92043 -13.63797 -13.21554 -13.14578 -13.00059 -12.69884 -12.52162 -12.24193 -11.68297 -11.45520 -11.19014 -11.09244 -10.58738 -10.38834 -10.07121 -8.21362 -6.32399 0.42477 1.19803 1.40449 1.43544 1.51727 1.74766 1.84652 2.19003 2.40954 3.05292 3.13225 3.21496 3.68801 3.96729 4.04803 4.46094 4.55497 4.58834 4.72914 4.87010 4.95167 5.40213 5.53338 5.58414 5.73811 5.82784 5.95737 6.28365 6.66179 6.77753 6.89365 6.94023 7.34952 8.87898 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.036297 B = 0.008336 C = 0.007721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.227066 B = 3358.195904 C = 3625.400334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.240 3.760 3 H 0.037 0.963 4 C -0.525 4.525 5 H 0.063 0.937 6 C 0.013 3.987 7 N -0.920 5.920 8 Si 0.967 3.033 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.260 1.260 12 N -0.561 5.561 13 C 0.493 3.507 14 O -0.501 6.501 15 C 0.100 3.900 16 N -0.703 5.703 17 C 0.530 3.470 18 O -0.558 6.558 19 C -0.157 4.157 20 C 0.524 3.476 21 O -0.539 6.539 22 H 0.013 0.987 23 H 0.047 0.953 24 H 0.065 0.935 25 H 0.265 0.735 26 H 0.166 0.834 27 H 0.148 0.852 28 H 0.425 0.575 29 H 0.147 0.853 30 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.492 -11.312 9.876 15.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.139 3.861 3 H 0.054 0.946 4 C -0.564 4.564 5 H 0.081 0.919 6 C -0.186 4.186 7 N -0.559 5.559 8 Si 0.792 3.208 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.184 1.184 12 N -0.302 5.302 13 C 0.282 3.718 14 O -0.373 6.373 15 C -0.026 4.026 16 N -0.360 5.360 17 C 0.315 3.685 18 O -0.436 6.436 19 C -0.199 4.199 20 C 0.314 3.686 21 O -0.415 6.415 22 H 0.032 0.968 23 H 0.066 0.934 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.183 0.817 27 H 0.166 0.834 28 H 0.266 0.734 29 H 0.165 0.835 30 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 5.021 -10.494 9.788 15.204 hybrid contribution -0.456 0.129 -0.992 1.099 sum 4.565 -10.366 8.796 14.341 Atomic orbital electron populations 1.21988 0.97483 1.01796 0.97813 1.18983 0.92097 0.93711 0.81351 0.94557 1.21285 1.36324 1.08099 0.90659 0.91894 1.25745 0.95112 0.95534 1.02235 1.70084 1.44339 1.16652 1.24821 0.85423 0.78818 0.78324 0.78285 1.20297 1.20958 1.18389 1.46608 1.45974 1.13795 1.23828 1.21923 0.82409 0.81541 0.85927 1.90698 1.28652 1.73294 1.44609 1.22276 1.05135 0.97866 0.77370 1.45946 1.46218 1.27441 1.16354 1.20441 0.80777 0.80487 0.86749 1.90782 1.65077 1.64410 1.23335 1.22394 0.98367 1.05536 0.93571 1.20700 0.78277 0.87018 0.82613 1.90728 1.62157 1.16591 1.71976 0.96832 0.93378 0.91670 0.92613 0.81671 0.83443 0.73422 0.83520 0.80542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.86 8.61 71.98 0.62 -6.24 16 2 C 0.24 12.44 2.25 44.25 0.10 12.54 16 3 H 0.04 2.19 6.52 -2.38 -0.02 2.18 16 4 C -0.53 -28.32 7.54 25.60 0.19 -28.12 16 5 H 0.06 3.24 7.37 -2.91 -0.02 3.22 16 6 C 0.01 0.74 5.27 84.66 0.45 1.19 16 7 N -0.92 -54.02 12.09 21.45 0.26 -53.76 16 8 Si 0.97 43.13 29.54 68.60 2.03 45.15 16 9 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 11 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 12 N -0.56 -22.33 2.48 -741.70 -1.84 -24.17 16 13 C 0.49 16.09 6.35 87.74 0.56 16.65 16 14 O -0.50 -20.33 13.32 -2.86 -0.04 -20.36 16 15 C 0.10 1.59 6.32 85.41 0.54 2.13 16 16 N -0.70 -11.95 5.56 -465.70 -2.59 -14.53 16 17 C 0.53 12.54 7.39 87.83 0.65 13.18 16 18 O -0.56 -17.61 17.99 -3.03 -0.05 -17.66 16 19 C -0.16 -3.48 5.50 29.20 0.16 -3.32 16 20 C 0.52 19.09 7.02 87.77 0.62 19.71 16 21 O -0.54 -24.97 15.93 -2.84 -0.05 -25.02 16 22 H 0.01 0.63 8.14 -2.38 -0.02 0.61 16 23 H 0.05 2.69 6.99 -2.39 -0.02 2.67 16 24 H 0.06 3.36 5.75 -2.39 -0.01 3.35 16 25 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 26 H 0.17 1.57 8.09 -2.39 -0.02 1.55 16 27 H 0.15 1.25 6.59 -2.39 -0.02 1.23 16 28 H 0.43 5.66 8.96 -92.70 -0.83 4.83 16 29 H 0.15 3.07 8.10 -2.39 -0.02 3.05 16 30 H 0.18 2.09 6.64 -2.39 -0.02 2.07 16 Total: -1.00 -79.35 255.93 1.96 -77.39 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: 0.36 Total: 5.25 kcal Atomic # 6 Polarization: 23.83 SS G_CDS: 3.88 Total: 27.71 kcal Atomic # 7 Polarization: -88.30 SS G_CDS: -4.17 Total: -92.47 kcal Atomic # 8 Polarization: -62.90 SS G_CDS: -0.14 Total: -63.04 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Total: -79.35 1.96 -77.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261086039.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.025 kcal (2) G-P(sol) polarization free energy of solvation -79.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds