Wall clock time and date at job start Mon Mar 30 2020 04:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.47204 * 2 1 4 4 C 1.33499 * 116.39389 * 270.02184 * 3 2 1 5 5 O 1.21235 * 118.86148 * 348.19591 * 4 3 2 6 6 C 1.50443 * 122.27812 * 168.17997 * 4 3 2 7 7 C 1.51256 * 109.14168 * 62.26896 * 6 4 3 8 8 O 1.21284 * 121.17926 * 109.09210 * 7 6 4 9 9 N 1.34801 * 117.64161 * 289.07497 * 7 6 4 10 10 C 1.37096 * 121.14134 * 179.79091 * 9 7 6 11 11 H 1.07998 * 120.00029 * 323.79240 * 10 9 7 12 12 C 1.38953 * 119.99736 * 143.79768 * 10 9 7 13 13 N 1.31408 * 120.00074 * 160.33866 * 12 10 9 14 14 Si 1.86800 * 119.99976 * 340.33321 * 12 10 9 15 15 H 1.48510 * 109.46891 * 95.49335 * 14 12 10 16 16 H 1.48500 * 109.47230 * 215.49154 * 14 12 10 17 17 H 1.48496 * 109.47247 * 335.49768 * 14 12 10 18 18 C 1.46979 * 117.71037 * 359.51891 * 9 7 6 19 19 C 1.33389 * 116.39350 * 89.99572 * 3 2 1 20 20 O 1.21232 * 118.64543 * 11.51109 * 19 3 2 21 21 H 1.09007 * 109.47064 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47131 * 299.99955 * 1 2 3 23 23 H 1.08997 * 109.46913 * 60.00313 * 1 2 3 24 24 H 1.08999 * 109.47389 * 239.99323 * 2 1 3 25 25 H 1.09006 * 109.46892 * 119.99565 * 2 1 3 26 26 H 1.08991 * 109.53052 * 182.16949 * 6 4 3 27 27 H 1.09005 * 109.52287 * 302.30620 * 6 4 3 28 28 H 0.97001 * 120.00131 * 179.97438 * 13 12 10 29 29 H 1.09004 * 109.46278 * 191.72889 * 18 9 7 30 30 H 1.09002 * 109.46469 * 311.70419 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2157 1.9409 -1.1958 5 8 2.1966 1.2361 -2.1821 6 6 2.4608 3.4159 -1.3619 7 6 3.7384 3.7903 -0.6439 8 8 4.7392 4.0918 -1.2591 9 7 3.7250 3.7775 0.7040 10 6 4.8440 4.1004 1.4272 11 1 5.8210 3.8132 1.0674 12 6 4.7212 4.7971 2.6231 13 7 5.7005 4.7766 3.4991 14 14 3.1639 5.7631 2.9856 15 1 2.2425 4.9295 3.7990 16 1 3.5099 6.9961 3.7374 17 1 2.5014 6.1313 1.7087 18 6 2.4678 3.4113 1.3715 19 6 2.2159 1.9403 1.1949 20 8 2.1909 1.2327 2.1789 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 2.5558 3.6524 -2.4216 27 1 1.6262 3.9739 -0.9375 28 1 5.6149 5.2633 4.3338 29 1 2.5402 3.6425 2.4343 30 1 1.6455 3.9761 0.9323 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261089940.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:48 Heat of formation + Delta-G solvation = -100.076649 kcal Electronic energy + Delta-G solvation = -18097.788300 eV Core-core repulsion = 15086.561204 eV Total energy + Delta-G solvation = -3011.227096 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.10948 -40.41184 -40.21903 -37.05679 -36.54988 -34.59583 -32.91886 -31.13680 -29.49792 -26.92096 -25.01830 -24.43139 -21.53178 -20.66406 -19.47281 -18.64756 -18.53339 -18.05442 -17.34446 -16.67723 -16.33688 -15.91431 -15.66464 -15.21664 -14.98883 -14.86868 -14.42113 -14.21346 -13.78306 -13.71365 -13.44236 -13.12543 -12.94360 -12.40648 -12.12304 -11.93174 -11.80603 -11.51140 -11.19466 -10.91863 -10.73207 -10.02753 -8.58437 -6.30414 0.17585 1.17985 1.28090 1.29370 1.46357 1.52575 1.59708 2.14894 2.36350 2.70521 3.05144 3.30184 3.57318 3.76372 3.90753 4.05987 4.15240 4.16804 4.25862 4.48108 4.55628 4.86783 4.95319 5.18765 5.32646 5.77921 5.90474 6.14532 6.25543 6.50675 6.70235 7.00817 7.49233 8.57457 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.028289 B = 0.010595 C = 0.008882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.533054 B = 2642.054218 C = 3151.803559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.065 3.935 3 N -0.566 5.566 4 C 0.544 3.456 5 O -0.511 6.511 6 C -0.154 4.154 7 C 0.464 3.536 8 O -0.587 6.587 9 N -0.462 5.462 10 C -0.348 4.348 11 H 0.050 0.950 12 C 0.013 3.987 13 N -0.902 5.902 14 Si 0.936 3.064 15 H -0.238 1.238 16 H -0.282 1.282 17 H -0.225 1.225 18 C 0.057 3.943 19 C 0.527 3.473 20 O -0.514 6.514 21 H 0.095 0.905 22 H 0.059 0.941 23 H 0.064 0.936 24 H 0.097 0.903 25 H 0.090 0.910 26 H 0.152 0.848 27 H 0.172 0.828 28 H 0.285 0.715 29 H 0.115 0.885 30 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.570 -2.986 -4.202 17.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.055 4.055 3 N -0.309 5.309 4 C 0.335 3.665 5 O -0.385 6.385 6 C -0.196 4.196 7 C 0.253 3.747 8 O -0.469 6.469 9 N -0.186 5.186 10 C -0.475 4.475 11 H 0.068 0.932 12 C -0.191 4.191 13 N -0.537 5.537 14 Si 0.756 3.244 15 H -0.163 1.163 16 H -0.208 1.208 17 H -0.147 1.147 18 C -0.069 4.069 19 C 0.315 3.685 20 O -0.386 6.386 21 H 0.113 0.887 22 H 0.078 0.922 23 H 0.083 0.917 24 H 0.115 0.885 25 H 0.108 0.892 26 H 0.170 0.830 27 H 0.189 0.811 28 H 0.095 0.905 29 H 0.133 0.867 30 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -15.943 -3.507 -4.305 16.882 hybrid contribution 0.514 0.280 0.589 0.830 sum -15.429 -3.227 -3.716 16.195 Atomic orbital electron populations 1.21991 0.91922 1.04527 1.02491 1.22066 0.97512 0.80938 1.04988 1.46317 1.60070 1.17786 1.06709 1.20360 0.73548 0.90855 0.81786 1.90713 1.46977 1.63393 1.37395 1.22396 0.98405 0.91705 1.07055 1.20843 0.90145 0.81360 0.82317 1.90611 1.36899 1.52242 1.67168 1.43816 1.09981 1.60103 1.04696 1.18640 0.85830 1.38372 1.04690 0.93212 1.26332 1.02410 0.96147 0.94167 1.69843 1.36366 1.39460 1.08075 0.86007 0.78617 0.78749 0.81037 1.16293 1.20778 1.14724 1.22705 0.90556 0.90482 1.03119 1.21231 0.73403 0.91788 0.82043 1.90698 1.46512 1.63176 1.38193 0.88661 0.92184 0.91702 0.88511 0.89176 0.82974 0.81110 0.90549 0.86743 0.82648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 10.19 71.98 0.73 -2.09 16 2 C 0.07 1.69 5.66 86.38 0.49 2.18 16 3 N -0.57 -17.08 2.51 -760.25 -1.91 -18.99 16 4 C 0.54 16.40 7.00 87.77 0.61 17.02 16 5 O -0.51 -17.07 16.08 -2.89 -0.05 -17.12 16 6 C -0.15 -4.20 5.50 29.20 0.16 -4.04 16 7 C 0.46 19.60 7.04 87.83 0.62 20.22 16 8 O -0.59 -30.85 17.19 -3.04 -0.05 -30.91 16 9 N -0.46 -20.56 2.31 -638.41 -1.47 -22.03 16 10 C -0.35 -19.46 9.56 84.04 0.80 -18.65 16 11 H 0.05 3.31 7.97 -2.91 -0.02 3.29 16 12 C 0.01 0.71 5.27 84.93 0.45 1.16 16 13 N -0.90 -51.77 13.96 21.66 0.30 -51.47 16 14 Si 0.94 36.33 24.82 68.60 1.70 38.03 16 15 H -0.24 -8.16 6.74 99.48 0.67 -7.49 16 16 H -0.28 -11.09 7.11 99.48 0.71 -10.38 16 17 H -0.23 -7.49 7.09 99.48 0.71 -6.79 16 18 C 0.06 1.93 3.82 85.41 0.33 2.25 16 19 C 0.53 17.94 7.21 87.74 0.63 18.57 16 20 O -0.51 -20.00 16.04 -2.88 -0.05 -20.05 16 21 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 22 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.06 1.14 8.14 -2.39 -0.02 1.13 16 24 H 0.10 2.51 6.93 -2.39 -0.02 2.50 16 25 H 0.09 2.49 6.92 -2.38 -0.02 2.47 16 26 H 0.15 3.71 8.10 -2.39 -0.02 3.69 16 27 H 0.17 2.85 6.64 -2.38 -0.02 2.83 16 28 H 0.28 14.86 8.31 -92.71 -0.77 14.09 16 29 H 0.11 4.20 4.11 -2.38 -0.01 4.19 16 30 H 0.16 3.38 6.59 -2.39 -0.02 3.36 16 Total: -1.00 -74.99 255.11 4.44 -70.55 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 1.14 Total: 15.36 kcal Atomic # 6 Polarization: 31.79 SS G_CDS: 4.83 Total: 36.62 kcal Atomic # 7 Polarization: -89.41 SS G_CDS: -3.08 Total: -92.49 kcal Atomic # 8 Polarization: -67.92 SS G_CDS: -0.15 Total: -68.07 kcal Atomic # 14 Polarization: 36.33 SS G_CDS: 1.70 Total: 38.03 kcal Total: -74.99 4.44 -70.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261089940.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.530 kcal (2) G-P(sol) polarization free energy of solvation -74.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds