Wall clock time and date at job start Mon Mar 30 2020 04:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 O 1.42902 * 109.54578 * 300.28187 * 9 7 2 11 11 C 1.53180 * 109.54322 * 60.45744 * 9 7 2 12 12 C 1.53083 * 109.16675 * 176.84233 * 11 9 7 13 13 O 1.42902 * 109.41746 * 302.39430 * 12 11 9 14 14 C 1.42901 * 114.09668 * 61.15623 * 13 12 11 15 15 H 1.09003 * 109.48219 * 58.83721 * 14 13 12 16 16 C 1.53004 * 109.48078 * 178.85943 * 14 13 12 17 17 F 1.39897 * 109.47098 * 59.99683 * 16 14 13 18 18 F 1.39905 * 109.47200 * 179.97438 * 16 14 13 19 19 F 1.39899 * 109.47207 * 299.99870 * 16 14 13 20 20 C 1.53106 * 109.48763 * 298.88660 * 14 13 12 21 21 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 22 22 H 0.96691 * 113.99965 * 59.99745 * 10 9 7 23 23 H 1.08994 * 109.52401 * 296.75690 * 11 9 7 24 24 H 1.09011 * 109.52112 * 56.87707 * 11 9 7 25 25 H 1.09006 * 109.48114 * 62.37423 * 12 11 9 26 26 H 1.09000 * 109.48592 * 182.40574 * 12 11 9 27 27 H 1.08998 * 109.45385 * 297.61748 * 20 14 13 28 28 H 1.08999 * 109.59836 * 177.42465 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 8 0.4290 -2.5712 1.1720 11 6 0.3731 -2.5895 -1.2465 12 6 -0.3273 -3.9505 -1.2719 13 8 0.6528 -4.9899 -1.2406 14 6 1.4723 -4.9840 -0.0698 15 1 0.8434 -5.0870 0.8145 16 6 2.4598 -6.1510 -0.1324 17 9 3.2671 -6.0184 -1.2673 18 9 3.2624 -6.1447 1.0136 19 9 1.7534 -7.3566 -0.2010 20 6 2.2452 -3.6646 0.0060 21 1 -0.4850 0.8400 0.0004 22 1 -0.2268 -1.8636 1.2353 23 1 -0.3736 -1.7958 -1.2259 24 1 0.9945 -2.4820 -2.1358 25 1 -0.9797 -4.0398 -0.4032 26 1 -0.9203 -4.0373 -2.1824 27 1 2.9056 -3.5806 -0.8571 28 1 2.8359 -3.6390 0.9217 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306245691.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:08 Heat of formation + Delta-G solvation = -276.994754 kcal Electronic energy + Delta-G solvation = -18600.188896 eV Core-core repulsion = 15007.140563 eV Total energy + Delta-G solvation = -3593.048332 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.076 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -51.14831 -48.66899 -48.61407 -40.62083 -37.41490 -34.17812 -33.20397 -32.27181 -28.58035 -26.91649 -24.35403 -23.53834 -21.09064 -19.57633 -19.41339 -19.30482 -18.40676 -17.12234 -16.90067 -16.57959 -16.18012 -15.57152 -15.40706 -15.20641 -15.12211 -15.05790 -14.79088 -14.77375 -14.42814 -13.75100 -13.40843 -13.03144 -12.86941 -12.65787 -12.41250 -12.22084 -12.01253 -11.67437 -11.39545 -10.74416 -10.60842 -9.99174 -8.20603 -6.38733 1.42290 1.44116 1.48602 1.51185 2.33402 2.38235 2.80519 2.98613 3.01573 3.51243 3.81253 4.00290 4.08710 4.26517 4.43173 4.51347 4.69530 4.72475 4.97429 5.24879 5.47577 5.65255 5.79866 6.05143 6.10149 6.64744 7.31662 7.42712 8.80364 Molecular weight = 240.08amu Principal moments of inertia in cm(-1) A = 0.039418 B = 0.008061 C = 0.007434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.163164 B = 3472.465499 C = 3765.568244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.035 3.965 3 Si 0.957 3.043 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.277 1.277 7 C -0.566 4.566 8 H 0.052 0.948 9 C 0.244 3.756 10 O -0.596 6.596 11 C -0.167 4.167 12 C 0.071 3.929 13 O -0.381 6.381 14 C 0.058 3.942 15 H 0.106 0.894 16 C 0.470 3.530 17 F -0.180 7.180 18 F -0.174 7.174 19 F -0.178 7.178 20 C -0.125 4.125 21 H 0.271 0.729 22 H 0.379 0.621 23 H 0.089 0.911 24 H 0.047 0.953 25 H 0.057 0.943 26 H 0.115 0.885 27 H 0.078 0.922 28 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.602 -7.549 -0.985 7.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.166 4.166 3 Si 0.783 3.217 4 H -0.200 1.200 5 H -0.205 1.205 6 H -0.202 1.202 7 C -0.604 4.604 8 H 0.070 0.930 9 C 0.205 3.795 10 O -0.405 6.405 11 C -0.205 4.205 12 C -0.005 4.005 13 O -0.300 6.300 14 C -0.001 4.001 15 H 0.124 0.876 16 C 0.415 3.585 17 F -0.161 7.161 18 F -0.155 7.155 19 F -0.160 7.160 20 C -0.162 4.162 21 H 0.081 0.919 22 H 0.229 0.771 23 H 0.107 0.893 24 H 0.066 0.934 25 H 0.075 0.925 26 H 0.133 0.867 27 H 0.097 0.903 28 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.856 -8.123 -1.026 8.232 hybrid contribution 0.270 1.551 0.064 1.576 sum 1.126 -6.572 -0.963 6.737 Atomic orbital electron populations 1.69620 1.06526 1.28305 1.50434 1.25585 0.95860 1.01956 0.93157 0.85632 0.78512 0.79037 0.78535 1.19984 1.20462 1.20228 1.21921 0.93675 0.92358 1.52397 0.92966 1.18653 0.87049 0.91132 0.82653 1.86061 1.52846 1.55061 1.46510 1.22695 1.01279 0.97383 0.99139 1.22805 0.89112 0.85660 1.02875 1.87770 1.49203 1.53342 1.39729 1.23052 0.92500 0.92267 0.92316 0.87633 1.20183 0.81083 0.83683 0.73505 1.93164 1.75165 1.95852 1.51967 1.93185 1.75023 1.96640 1.50646 1.93172 1.78349 1.48443 1.96004 1.22106 0.98548 0.92545 1.03046 0.91918 0.77068 0.89279 0.93444 0.92512 0.86719 0.90321 0.90554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.61 9.74 21.45 0.21 -45.40 15 2 C 0.03 1.76 5.22 84.65 0.44 2.20 15 3 Si 0.96 40.77 29.54 68.60 2.03 42.80 15 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 15 5 H -0.28 -11.56 7.11 99.48 0.71 -10.85 15 6 H -0.28 -11.81 7.11 99.48 0.71 -11.10 15 7 C -0.57 -29.22 8.25 25.60 0.21 -29.01 15 8 H 0.05 2.72 7.75 -2.91 -0.02 2.69 15 9 C 0.24 11.38 0.67 -11.42 -0.01 11.38 15 10 O -0.60 -28.40 11.93 -148.98 -1.78 -30.18 15 11 C -0.17 -7.20 4.86 30.68 0.15 -7.05 15 12 C 0.07 2.54 6.69 72.01 0.48 3.02 15 13 O -0.38 -14.06 10.30 -148.98 -1.53 -15.60 15 14 C 0.06 2.11 2.47 30.63 0.08 2.18 15 15 H 0.11 3.76 7.82 -2.39 -0.02 3.74 15 16 C 0.47 15.40 2.85 71.98 0.21 15.61 15 17 F -0.18 -6.09 16.70 44.97 0.75 -5.34 15 18 F -0.17 -5.49 16.85 44.97 0.76 -4.73 15 19 F -0.18 -5.62 17.26 44.97 0.78 -4.84 15 20 C -0.12 -5.12 4.13 30.69 0.13 -4.99 15 21 H 0.27 13.03 8.31 -92.71 -0.77 12.26 15 22 H 0.38 18.63 7.14 -74.06 -0.53 18.10 15 23 H 0.09 4.16 6.20 -2.39 -0.01 4.15 15 24 H 0.05 2.10 8.14 -2.38 -0.02 2.08 15 25 H 0.06 2.01 7.82 -2.38 -0.02 1.99 15 26 H 0.11 3.45 8.14 -2.39 -0.02 3.43 15 27 H 0.08 3.22 7.74 -2.39 -0.02 3.21 15 28 H 0.08 3.11 7.88 -2.39 -0.02 3.09 15 Total: -1.00 -51.62 245.73 3.56 -48.06 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: 0.67 Total: 21.89 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: 1.68 Total: -6.66 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: 0.21 Total: -45.40 kcal Atomic # 8 Polarization: -42.46 SS G_CDS: -3.31 Total: -45.78 kcal Atomic # 9 Polarization: -17.20 SS G_CDS: 2.28 Total: -14.91 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.80 kcal Total: -51.62 3.56 -48.06 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306245691.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -228.936 kcal (2) G-P(sol) polarization free energy of solvation -51.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -280.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -276.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds