Wall clock time and date at job start Mon Mar 30 2020 04:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 O 1.42900 * 109.54423 * 59.99890 * 9 7 2 11 11 C 1.53188 * 109.54405 * 299.82308 * 9 7 2 12 12 C 1.53093 * 109.16115 * 297.11671 * 11 9 7 13 13 O 1.42908 * 109.41059 * 302.38708 * 12 11 9 14 14 C 1.42894 * 114.09840 * 61.16355 * 13 12 11 15 15 H 1.09006 * 109.48424 * 58.83257 * 14 13 12 16 16 C 1.53001 * 109.48294 * 178.85514 * 14 13 12 17 17 F 1.39900 * 109.46824 * 59.99635 * 16 14 13 18 18 F 1.39901 * 109.47229 * 179.97438 * 16 14 13 19 19 F 1.39901 * 109.47012 * 300.00303 * 16 14 13 20 20 C 1.53174 * 109.54359 * 180.18059 * 9 7 2 21 21 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 22 22 H 0.96698 * 113.99846 * 300.00352 * 10 9 7 23 23 H 1.09002 * 109.51864 * 57.01568 * 11 9 7 24 24 H 1.08991 * 109.52103 * 177.20647 * 11 9 7 25 25 H 1.08991 * 109.48358 * 62.37211 * 12 11 9 26 26 H 1.08999 * 109.47515 * 182.40739 * 12 11 9 27 27 H 1.09004 * 109.51991 * 182.79096 * 20 9 7 28 28 H 1.09002 * 109.52194 * 302.97359 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 8 0.4283 -2.5762 -1.1665 11 6 0.3734 -2.5843 1.2522 12 6 1.2686 -2.5780 2.4941 13 8 2.1891 -3.6686 2.4216 14 6 3.0675 -3.6168 1.2957 15 1 3.6430 -2.6915 1.3258 16 6 4.0214 -4.8124 1.3372 17 9 3.2827 -5.9998 1.2981 18 9 4.8809 -4.7617 0.2346 19 9 4.7723 -4.7691 2.5169 20 6 2.2448 -3.6647 0.0034 21 1 -0.4850 0.8401 0.0004 22 1 -0.2276 -1.8687 -1.2325 23 1 -0.2998 -1.7276 1.2842 24 1 -0.2086 -3.5054 1.2273 25 1 1.8202 -1.6391 2.5399 26 1 0.6520 -2.6814 3.3870 27 1 1.7004 -4.6077 -0.0467 28 1 2.9086 -3.5802 -0.8571 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306245698.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:12 Heat of formation + Delta-G solvation = -259.209673 kcal Electronic energy + Delta-G solvation = -18744.233801 eV Core-core repulsion = 15151.956688 eV Total energy + Delta-G solvation = -3592.277114 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.076 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.73516 -47.27262 -47.19465 -38.95044 -35.67470 -32.30906 -31.57475 -30.53422 -26.46806 -25.24649 -22.81991 -22.04505 -19.46338 -18.14338 -17.90879 -17.55164 -16.66185 -15.44273 -15.24596 -14.86114 -14.29706 -14.11773 -13.97730 -13.74040 -13.66031 -13.40096 -13.37275 -13.07430 -12.77060 -12.10296 -11.71881 -11.37744 -11.01947 -10.91014 -10.66074 -10.52861 -10.31013 -9.94735 -9.40656 -9.04739 -8.67283 -8.20401 -6.33094 -4.45910 2.95993 3.14996 3.21065 3.23962 3.82919 4.18244 4.25485 4.44416 4.92397 5.02862 5.42531 5.59364 5.84050 5.99507 6.15397 6.24188 6.33397 6.60659 6.80837 6.97643 7.12677 7.31540 7.59853 7.81908 7.99460 8.56017 9.23326 9.39029 10.69869 Molecular weight = 240.08amu Principal moments of inertia in cm(-1) A = 0.031065 B = 0.009350 C = 0.008765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.111973 B = 2993.908909 C = 3193.665773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.073 3.927 3 Si 0.899 3.101 4 H -0.284 1.284 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.543 4.543 8 H 0.061 0.939 9 C 0.256 3.744 10 O -0.590 6.590 11 C -0.175 4.175 12 C 0.079 3.921 13 O -0.381 6.381 14 C 0.065 3.935 15 H 0.107 0.893 16 C 0.460 3.540 17 F -0.180 7.180 18 F -0.179 7.179 19 F -0.183 7.183 20 C -0.130 4.130 21 H 0.270 0.730 22 H 0.384 0.616 23 H 0.108 0.892 24 H 0.038 0.962 25 H 0.065 0.935 26 H 0.082 0.918 27 H 0.065 0.935 28 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.837 -4.334 3.314 6.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.129 4.129 3 Si 0.726 3.274 4 H -0.210 1.210 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.581 4.581 8 H 0.079 0.921 9 C 0.216 3.784 10 O -0.399 6.399 11 C -0.214 4.214 12 C 0.004 3.996 13 O -0.300 6.300 14 C 0.006 3.994 15 H 0.125 0.875 16 C 0.406 3.594 17 F -0.161 7.161 18 F -0.160 7.160 19 F -0.165 7.165 20 C -0.168 4.168 21 H 0.080 0.920 22 H 0.234 0.766 23 H 0.126 0.874 24 H 0.057 0.943 25 H 0.083 0.917 26 H 0.100 0.900 27 H 0.084 0.916 28 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.067 -4.909 3.340 7.197 hybrid contribution 0.243 1.447 -0.040 1.468 sum 4.310 -3.462 3.300 6.438 Atomic orbital electron populations 1.69555 1.05966 1.27774 1.50215 1.24987 0.94994 0.99484 0.93449 0.86536 0.79667 0.82268 0.78958 1.20991 1.20011 1.19934 1.21702 0.93588 0.90944 1.51864 0.92090 1.18471 0.86618 0.90715 0.82600 1.86093 1.52789 1.55301 1.45709 1.22828 1.00029 1.02182 0.96325 1.22612 0.90245 0.88494 0.98279 1.87732 1.49360 1.49547 1.43396 1.23013 0.92055 0.94186 0.90196 0.87516 1.20535 0.80635 0.85116 0.73151 1.93158 1.76714 1.50197 1.96037 1.93167 1.71951 1.96602 1.54296 1.93159 1.78184 1.96653 1.48469 1.22055 0.99144 1.00823 0.94770 0.91965 0.76557 0.87398 0.94309 0.91671 0.89981 0.91610 0.90430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.27 9.69 55.43 0.54 -21.73 15 2 C 0.07 1.80 5.22 -17.82 -0.09 1.71 15 3 Si 0.90 19.51 29.54 -169.99 -5.02 14.49 15 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 15 5 H -0.27 -5.91 7.11 56.52 0.40 -5.51 15 6 H -0.27 -6.04 7.11 56.52 0.40 -5.63 15 7 C -0.54 -13.45 6.50 -34.44 -0.22 -13.68 15 8 H 0.06 1.49 6.92 -52.49 -0.36 1.13 15 9 C 0.26 6.05 0.85 -91.59 -0.08 5.97 15 10 O -0.59 -14.91 12.97 -35.23 -0.46 -15.36 15 11 C -0.18 -3.88 5.09 -26.59 -0.14 -4.01 15 12 C 0.08 1.57 6.62 37.21 0.25 1.81 15 13 O -0.38 -7.61 10.30 -35.23 -0.36 -7.97 15 14 C 0.07 1.26 2.39 -26.59 -0.06 1.20 15 15 H 0.11 2.05 6.87 -51.93 -0.36 1.70 15 16 C 0.46 8.10 2.85 37.16 0.11 8.21 15 17 F -0.18 -3.22 16.70 2.25 0.04 -3.19 15 18 F -0.18 -3.03 16.85 2.25 0.04 -2.99 15 19 F -0.18 -3.15 17.26 2.25 0.04 -3.11 15 20 C -0.13 -2.75 4.29 -26.50 -0.11 -2.87 15 21 H 0.27 6.47 8.31 -40.82 -0.34 6.14 15 22 H 0.38 9.72 7.15 45.56 0.33 10.04 15 23 H 0.11 2.55 6.03 -51.93 -0.31 2.24 15 24 H 0.04 0.84 8.14 -51.93 -0.42 0.42 15 25 H 0.07 1.34 7.38 -51.93 -0.38 0.96 15 26 H 0.08 1.41 8.14 -51.93 -0.42 0.99 15 27 H 0.07 1.38 7.74 -51.93 -0.40 0.98 15 28 H 0.08 1.62 7.89 -51.93 -0.41 1.21 15 LS Contribution 242.99 15.07 3.66 3.66 Total: -1.00 -25.20 242.99 -3.76 -28.97 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -1.88 Total: 8.90 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: -0.35 Total: -1.66 kcal Atomic # 7 Polarization: -22.27 SS G_CDS: 0.54 Total: -21.73 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.82 Total: -23.34 kcal Atomic # 9 Polarization: -9.40 SS G_CDS: 0.11 Total: -9.29 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -25.20 -3.76 -28.97 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306245698.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -230.244 kcal (2) G-P(sol) polarization free energy of solvation -25.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -255.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -259.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds