Wall clock time and date at job start Mon Mar 30 2020 04:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 O 1.42900 * 109.54423 * 59.99890 * 9 7 2 11 11 C 1.53188 * 109.54405 * 299.82308 * 9 7 2 12 12 C 1.53093 * 109.16115 * 297.11671 * 11 9 7 13 13 O 1.42908 * 109.41059 * 302.38708 * 12 11 9 14 14 C 1.42894 * 114.09840 * 61.16355 * 13 12 11 15 15 H 1.09006 * 109.48424 * 58.83257 * 14 13 12 16 16 C 1.53001 * 109.48294 * 178.85514 * 14 13 12 17 17 F 1.39900 * 109.46824 * 59.99635 * 16 14 13 18 18 F 1.39901 * 109.47229 * 179.97438 * 16 14 13 19 19 F 1.39901 * 109.47012 * 300.00303 * 16 14 13 20 20 C 1.53174 * 109.54359 * 180.18059 * 9 7 2 21 21 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 22 22 H 0.96698 * 113.99846 * 300.00352 * 10 9 7 23 23 H 1.09002 * 109.51864 * 57.01568 * 11 9 7 24 24 H 1.08991 * 109.52103 * 177.20647 * 11 9 7 25 25 H 1.08991 * 109.48358 * 62.37211 * 12 11 9 26 26 H 1.08999 * 109.47515 * 182.40739 * 12 11 9 27 27 H 1.09004 * 109.51991 * 182.79096 * 20 9 7 28 28 H 1.09002 * 109.52194 * 302.97359 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 8 0.4283 -2.5762 -1.1665 11 6 0.3734 -2.5843 1.2522 12 6 1.2686 -2.5780 2.4941 13 8 2.1891 -3.6686 2.4216 14 6 3.0675 -3.6168 1.2957 15 1 3.6430 -2.6915 1.3258 16 6 4.0214 -4.8124 1.3372 17 9 3.2827 -5.9998 1.2981 18 9 4.8809 -4.7617 0.2346 19 9 4.7723 -4.7691 2.5169 20 6 2.2448 -3.6647 0.0034 21 1 -0.4850 0.8401 0.0004 22 1 -0.2276 -1.8687 -1.2325 23 1 -0.2998 -1.7276 1.2842 24 1 -0.2086 -3.5054 1.2273 25 1 1.8202 -1.6391 2.5399 26 1 0.6520 -2.6814 3.3870 27 1 1.7004 -4.6077 -0.0467 28 1 2.9086 -3.5802 -0.8571 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306245698.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:12 Heat of formation + Delta-G solvation = -275.731246 kcal Electronic energy + Delta-G solvation = -18744.950230 eV Core-core repulsion = 15151.956688 eV Total energy + Delta-G solvation = -3592.993543 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.076 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -51.14478 -48.66455 -48.60952 -40.62098 -37.48210 -34.21464 -33.22634 -32.28249 -28.14862 -27.00315 -24.50315 -23.59689 -21.20473 -19.56992 -19.39062 -19.12887 -18.44425 -17.17110 -16.99514 -16.49682 -16.00409 -15.56837 -15.43218 -15.36168 -15.06266 -14.89139 -14.78082 -14.74456 -14.48068 -13.85887 -13.53862 -12.95306 -12.74565 -12.63345 -12.42535 -12.28787 -12.10879 -11.62755 -11.17625 -10.77454 -10.49778 -10.08601 -8.19908 -6.38640 1.42666 1.46520 1.49359 1.51892 2.34737 2.38291 2.73560 2.98345 3.06807 3.53702 3.80894 3.98556 4.16619 4.29621 4.45112 4.63012 4.66025 4.91039 5.09892 5.21373 5.30749 5.50449 5.82940 6.06706 6.13977 6.65857 7.31568 7.43128 8.81611 Molecular weight = 240.08amu Principal moments of inertia in cm(-1) A = 0.031065 B = 0.009350 C = 0.008765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.111973 B = 2993.908909 C = 3193.665773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.038 3.962 3 Si 0.952 3.048 4 H -0.283 1.283 5 H -0.269 1.269 6 H -0.278 1.278 7 C -0.557 4.557 8 H 0.059 0.941 9 C 0.240 3.760 10 O -0.602 6.602 11 C -0.170 4.170 12 C 0.084 3.916 13 O -0.381 6.381 14 C 0.066 3.934 15 H 0.109 0.891 16 C 0.470 3.530 17 F -0.180 7.180 18 F -0.173 7.173 19 F -0.177 7.177 20 C -0.127 4.127 21 H 0.271 0.729 22 H 0.379 0.621 23 H 0.091 0.909 24 H 0.037 0.963 25 H 0.057 0.943 26 H 0.112 0.888 27 H 0.064 0.936 28 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.544 -4.254 3.995 7.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.163 4.163 3 Si 0.778 3.222 4 H -0.208 1.208 5 H -0.194 1.194 6 H -0.204 1.204 7 C -0.595 4.595 8 H 0.077 0.923 9 C 0.201 3.799 10 O -0.411 6.411 11 C -0.208 4.208 12 C 0.008 3.992 13 O -0.300 6.300 14 C 0.007 3.993 15 H 0.127 0.873 16 C 0.416 3.584 17 F -0.161 7.161 18 F -0.155 7.155 19 F -0.159 7.159 20 C -0.164 4.164 21 H 0.081 0.919 22 H 0.230 0.770 23 H 0.109 0.891 24 H 0.056 0.944 25 H 0.075 0.925 26 H 0.129 0.871 27 H 0.083 0.917 28 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.780 -4.842 4.028 7.907 hybrid contribution 0.000 1.409 -0.283 1.437 sum 4.780 -3.432 3.745 6.975 Atomic orbital electron populations 1.69638 1.06713 1.28298 1.50180 1.25570 0.95684 1.01861 0.93209 0.85702 0.78561 0.79215 0.78743 1.20825 1.19395 1.20390 1.21860 0.93606 0.91703 1.52345 0.92274 1.18758 0.87115 0.91458 0.82617 1.86085 1.52941 1.55171 1.46916 1.22711 0.99934 1.01298 0.96874 1.22609 0.90030 0.88227 0.98288 1.87740 1.49354 1.49544 1.43401 1.22975 0.91978 0.95246 0.89143 0.87336 1.20154 0.80386 0.84377 0.73473 1.93162 1.76815 1.50103 1.96064 1.93184 1.71670 1.96540 1.54056 1.93174 1.77937 1.96593 1.48167 1.21990 0.98823 0.99757 0.95877 0.91913 0.77040 0.89053 0.94387 0.92458 0.87062 0.91706 0.90557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -44.87 9.69 21.45 0.21 -44.66 15 2 C 0.04 1.82 5.22 84.66 0.44 2.27 15 3 Si 0.95 39.28 29.54 68.60 2.03 41.31 15 4 H -0.28 -11.52 7.11 99.48 0.71 -10.82 15 5 H -0.27 -10.79 7.11 99.48 0.71 -10.08 15 6 H -0.28 -11.62 7.11 99.48 0.71 -10.91 15 7 C -0.56 -27.24 6.50 25.60 0.17 -27.08 15 8 H 0.06 2.85 6.92 -2.91 -0.02 2.83 15 9 C 0.24 11.23 0.85 -11.42 -0.01 11.22 15 10 O -0.60 -30.54 12.97 -148.98 -1.93 -32.47 15 11 C -0.17 -7.39 5.09 30.69 0.16 -7.23 15 12 C 0.08 3.18 6.62 72.01 0.48 3.65 15 13 O -0.38 -14.46 10.30 -148.98 -1.53 -15.99 15 14 C 0.07 2.45 2.39 30.69 0.07 2.53 15 15 H 0.11 4.01 6.87 -2.38 -0.02 3.99 15 16 C 0.47 15.63 2.85 71.98 0.21 15.83 15 17 F -0.18 -6.10 16.70 44.97 0.75 -5.35 15 18 F -0.17 -5.53 16.85 44.97 0.76 -4.77 15 19 F -0.18 -5.68 17.26 44.97 0.78 -4.91 15 20 C -0.13 -5.24 4.29 30.75 0.13 -5.11 15 21 H 0.27 12.86 8.31 -92.70 -0.77 12.09 15 22 H 0.38 19.45 7.15 -74.06 -0.53 18.92 15 23 H 0.09 4.30 6.03 -2.39 -0.01 4.28 15 24 H 0.04 1.62 8.14 -2.39 -0.02 1.60 15 25 H 0.06 2.27 7.38 -2.39 -0.02 2.25 15 26 H 0.11 3.55 8.14 -2.39 -0.02 3.53 15 27 H 0.06 2.66 7.74 -2.39 -0.02 2.64 15 28 H 0.08 3.13 7.89 -2.39 -0.02 3.11 15 Total: -1.00 -50.71 242.99 3.37 -47.34 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: 0.68 Total: 23.43 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: 1.64 Total: -3.92 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: 0.21 Total: -44.66 kcal Atomic # 8 Polarization: -45.00 SS G_CDS: -3.47 Total: -48.47 kcal Atomic # 9 Polarization: -17.31 SS G_CDS: 2.29 Total: -15.03 kcal Atomic # 14 Polarization: 39.28 SS G_CDS: 2.03 Total: 41.31 kcal Total: -50.71 3.37 -47.34 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306245698.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -228.392 kcal (2) G-P(sol) polarization free energy of solvation -50.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -279.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -275.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds