Wall clock time and date at job start Mon Mar 30 2020 03:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 110.44702 * 2 1 4 4 N 1.30452 * 126.07652 * 245.95323 * 3 2 1 5 5 O 1.21280 * 110.68629 * 180.02562 * 4 3 2 6 6 C 1.34753 * 109.53561 * 0.02562 * 5 4 3 7 7 C 1.40339 * 126.79485 * 179.97438 * 6 5 4 8 8 H 1.07998 * 119.99769 * 180.02562 * 7 6 5 9 9 C 1.40456 * 120.00011 * 0.02562 * 7 6 5 10 10 N 1.30511 * 120.00152 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00018 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47284 * 90.00105 * 11 9 7 13 13 H 1.48500 * 109.47064 * 209.99807 * 11 9 7 14 14 H 1.48497 * 109.47192 * 329.99884 * 11 9 7 15 15 N 1.33335 * 106.40803 * 359.73367 * 6 5 4 16 16 C 1.54274 * 110.40288 * 237.61847 * 2 1 3 17 17 C 1.53860 * 108.92332 * 269.15923 * 16 2 1 18 18 C 1.55137 * 106.89834 * 312.74196 * 17 16 2 19 19 S 1.83094 * 110.40266 * 122.38630 * 2 1 3 20 20 H 1.08993 * 109.47019 * 299.06615 * 1 2 3 21 21 H 1.08996 * 109.47194 * 59.07126 * 1 2 3 22 22 H 1.09003 * 109.46832 * 179.06672 * 1 2 3 23 23 H 0.96998 * 120.00140 * 180.02562 * 10 9 7 24 24 H 1.08998 * 109.60924 * 149.23933 * 16 2 1 25 25 H 1.09001 * 109.46395 * 28.98840 * 16 2 1 26 26 H 1.09003 * 109.97334 * 193.38833 * 17 16 2 27 27 H 1.08991 * 109.97835 * 72.10359 * 17 16 2 28 28 H 1.09002 * 110.85906 * 283.94454 * 18 17 16 29 29 H 1.09000 * 110.85582 * 160.29640 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0565 1.4120 0.0000 4 7 2.7274 1.9817 -0.9629 5 8 3.0134 3.1230 -0.6687 6 6 2.5351 3.4053 0.5590 7 6 2.6600 4.6199 1.2510 8 1 2.2315 4.7263 2.2366 9 6 3.3421 5.6970 0.6616 10 7 3.8602 5.5682 -0.5293 11 14 3.5089 7.3134 1.5830 12 1 4.7515 7.2940 2.3958 13 1 3.5713 8.4335 0.6100 14 1 2.3364 7.4977 2.4755 15 7 1.9152 2.3040 0.9841 16 6 2.0679 -0.7744 -1.2211 17 6 2.2618 -2.2499 -0.8304 18 6 3.0126 -2.2619 0.5272 19 16 2.1683 -0.9192 1.4492 20 1 -0.3633 0.4992 0.8982 21 1 -0.3633 0.5282 -0.8815 22 1 -0.3633 -1.0276 -0.0167 23 1 4.3316 6.3120 -0.9361 24 1 3.0223 -0.3498 -1.5321 25 1 1.3519 -0.7039 -2.0400 26 1 2.8553 -2.7609 -1.5886 27 1 1.2929 -2.7375 -0.7243 28 1 4.0691 -2.0325 0.3884 29 1 2.8853 -3.2192 1.0325 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306682708.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:44 Heat of formation + Delta-G solvation = 37.423884 kcal Electronic energy + Delta-G solvation = -15097.526150 eV Core-core repulsion = 12535.014395 eV Total energy + Delta-G solvation = -2562.511755 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.03460 -36.83341 -34.09807 -33.59946 -31.49524 -29.84629 -26.77960 -26.12427 -23.93881 -21.62102 -21.34541 -19.72287 -17.85502 -16.11480 -15.76875 -15.42638 -15.27582 -14.66779 -14.06464 -13.38511 -13.31487 -13.16556 -12.44741 -12.24033 -11.73650 -11.61491 -11.45876 -11.30990 -11.13208 -10.88035 -10.59349 -10.46657 -10.05300 -9.91419 -9.70081 -9.33187 -8.85618 -8.25454 -7.27637 -7.07516 -5.00422 2.02699 2.67764 2.80904 2.97126 3.03069 3.34570 3.74815 4.00209 4.64827 4.71568 4.94567 5.03174 5.08383 5.30096 5.38827 5.42916 5.67861 5.78792 5.82582 5.99223 6.00538 6.11033 6.32257 6.41260 6.63372 6.86171 7.33060 7.91906 8.12433 8.32606 8.48364 9.91770 10.37715 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.049825 B = 0.006401 C = 0.006212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.830876 B = 4373.275845 C = 4506.081542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.092 3.908 3 C 0.177 3.823 4 N -0.465 5.465 5 O 0.047 5.953 6 C 0.304 3.696 7 C -0.415 4.415 8 H 0.113 0.887 9 C 0.071 3.929 10 N -0.765 5.765 11 Si 0.936 3.064 12 H -0.264 1.264 13 H -0.273 1.273 14 H -0.256 1.256 15 N -0.599 5.599 16 C -0.122 4.122 17 C -0.123 4.123 18 C -0.087 4.087 19 S -0.251 6.251 20 H 0.071 0.929 21 H 0.062 0.938 22 H 0.065 0.935 23 H 0.292 0.708 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.008 -8.093 -0.875 8.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.019 4.019 3 C -0.098 4.098 4 N -0.196 5.196 5 O -0.001 6.001 6 C 0.113 3.887 7 C -0.453 4.453 8 H 0.130 0.870 9 C -0.154 4.154 10 N -0.392 5.392 11 Si 0.759 3.241 12 H -0.189 1.189 13 H -0.197 1.197 14 H -0.180 1.180 15 N -0.343 5.343 16 C -0.161 4.161 17 C -0.162 4.162 18 C -0.236 4.236 19 S -0.024 6.024 20 H 0.090 0.910 21 H 0.081 0.919 22 H 0.084 0.916 23 H 0.103 0.897 24 H 0.105 0.895 25 H 0.101 0.899 26 H 0.099 0.901 27 H 0.095 0.905 28 H 0.105 0.895 29 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.009 -8.399 -0.278 8.640 hybrid contribution 0.393 0.799 -0.830 1.217 sum -1.616 -7.600 -1.108 7.848 Atomic orbital electron populations 1.21820 0.91017 1.01931 1.03128 1.21006 0.97737 0.89536 0.93621 1.24138 0.99498 0.96449 0.89719 1.74267 1.24140 0.95725 1.25441 1.85523 1.61158 1.20994 1.32409 1.24214 0.87946 0.94417 0.82118 1.18568 1.32250 0.91217 1.03236 0.86951 1.26188 0.92732 1.01663 0.94788 1.69634 1.22926 1.33718 1.12961 0.85841 0.80209 0.78462 0.79636 1.18854 1.19744 1.17973 1.72204 1.32659 1.00777 1.28617 1.22434 1.03595 0.93306 0.96775 1.22535 1.00843 0.96902 0.95921 1.24279 1.02061 0.99577 0.97663 1.87759 1.69915 1.29379 1.15303 0.91022 0.91931 0.91646 0.89719 0.89458 0.89866 0.90071 0.90483 0.89519 0.88271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.06 8.52 37.16 0.32 -1.74 15 2 C 0.09 1.83 1.07 -91.10 -0.10 1.73 15 3 C 0.18 4.49 6.49 -156.78 -1.02 3.48 15 4 N -0.47 -12.64 11.04 31.51 0.35 -12.29 15 5 O 0.05 1.36 9.74 15.13 0.15 1.51 15 6 C 0.30 8.76 7.82 -16.35 -0.13 8.63 15 7 C -0.41 -11.11 9.48 -37.96 -0.36 -11.47 15 8 H 0.11 2.86 7.85 -52.49 -0.41 2.44 15 9 C 0.07 1.73 5.50 -17.28 -0.10 1.64 15 10 N -0.77 -19.58 12.06 55.57 0.67 -18.91 15 11 Si 0.94 17.78 29.56 -169.99 -5.03 12.75 15 12 H -0.26 -4.92 7.11 56.52 0.40 -4.52 15 13 H -0.27 -4.99 7.11 56.52 0.40 -4.59 15 14 H -0.26 -4.78 7.11 56.52 0.40 -4.38 15 15 N -0.60 -16.73 11.61 -11.50 -0.13 -16.86 15 16 C -0.12 -2.01 5.29 -25.62 -0.14 -2.15 15 17 C -0.12 -1.55 6.46 -25.15 -0.16 -1.72 15 18 C -0.09 -1.21 7.38 38.29 0.28 -0.93 15 19 S -0.25 -4.76 22.11 -107.50 -2.38 -7.13 15 20 H 0.07 1.34 8.14 -51.93 -0.42 0.92 15 21 H 0.06 1.05 8.14 -51.93 -0.42 0.63 15 22 H 0.06 0.91 8.14 -51.93 -0.42 0.49 15 23 H 0.29 6.60 8.29 -40.82 -0.34 6.26 15 24 H 0.09 1.64 7.23 -51.93 -0.38 1.27 15 25 H 0.08 1.25 7.88 -51.93 -0.41 0.84 15 26 H 0.08 0.84 8.14 -51.93 -0.42 0.42 15 27 H 0.08 0.86 8.14 -51.93 -0.42 0.44 15 28 H 0.09 1.21 8.14 -51.93 -0.42 0.79 15 29 H 0.10 1.12 8.14 -51.93 -0.42 0.70 15 LS Contribution 263.69 15.07 3.97 3.97 Total: -1.00 -30.70 263.69 -7.08 -37.79 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -3.29 Total: 1.70 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -1.40 Total: -2.53 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: 0.88 Total: -48.05 kcal Atomic # 8 Polarization: 1.36 SS G_CDS: 0.15 Total: 1.51 kcal Atomic # 14 Polarization: 17.78 SS G_CDS: -5.03 Total: 12.75 kcal Atomic # 16 Polarization: -4.76 SS G_CDS: -2.38 Total: -7.13 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -30.70 -7.08 -37.79 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306682708.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.211 kcal (2) G-P(sol) polarization free energy of solvation -30.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds