Wall clock time and date at job start Mon Mar 30 2020 03:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 110.44702 * 2 1 4 4 N 1.30452 * 126.07652 * 245.95323 * 3 2 1 5 5 O 1.21280 * 110.68629 * 180.02562 * 4 3 2 6 6 C 1.34753 * 109.53561 * 0.02562 * 5 4 3 7 7 C 1.40339 * 126.79485 * 179.97438 * 6 5 4 8 8 H 1.07998 * 119.99769 * 180.02562 * 7 6 5 9 9 C 1.40456 * 120.00011 * 0.02562 * 7 6 5 10 10 N 1.30511 * 120.00152 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00018 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47284 * 90.00105 * 11 9 7 13 13 H 1.48500 * 109.47064 * 209.99807 * 11 9 7 14 14 H 1.48497 * 109.47192 * 329.99884 * 11 9 7 15 15 N 1.33335 * 106.40803 * 359.73367 * 6 5 4 16 16 C 1.54274 * 110.40288 * 237.61847 * 2 1 3 17 17 C 1.53860 * 108.92332 * 269.15923 * 16 2 1 18 18 C 1.55137 * 106.89834 * 312.74196 * 17 16 2 19 19 S 1.83094 * 110.40266 * 122.38630 * 2 1 3 20 20 H 1.08993 * 109.47019 * 299.06615 * 1 2 3 21 21 H 1.08996 * 109.47194 * 59.07126 * 1 2 3 22 22 H 1.09003 * 109.46832 * 179.06672 * 1 2 3 23 23 H 0.96998 * 120.00140 * 180.02562 * 10 9 7 24 24 H 1.08998 * 109.60924 * 149.23933 * 16 2 1 25 25 H 1.09001 * 109.46395 * 28.98840 * 16 2 1 26 26 H 1.09003 * 109.97334 * 193.38833 * 17 16 2 27 27 H 1.08991 * 109.97835 * 72.10359 * 17 16 2 28 28 H 1.09002 * 110.85906 * 283.94454 * 18 17 16 29 29 H 1.09000 * 110.85582 * 160.29640 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0565 1.4120 0.0000 4 7 2.7274 1.9817 -0.9629 5 8 3.0134 3.1230 -0.6687 6 6 2.5351 3.4053 0.5590 7 6 2.6600 4.6199 1.2510 8 1 2.2315 4.7263 2.2366 9 6 3.3421 5.6970 0.6616 10 7 3.8602 5.5682 -0.5293 11 14 3.5089 7.3134 1.5830 12 1 4.7515 7.2940 2.3958 13 1 3.5713 8.4335 0.6100 14 1 2.3364 7.4977 2.4755 15 7 1.9152 2.3040 0.9841 16 6 2.0679 -0.7744 -1.2211 17 6 2.2618 -2.2499 -0.8304 18 6 3.0126 -2.2619 0.5272 19 16 2.1683 -0.9192 1.4492 20 1 -0.3633 0.4992 0.8982 21 1 -0.3633 0.5282 -0.8815 22 1 -0.3633 -1.0276 -0.0167 23 1 4.3316 6.3120 -0.9361 24 1 3.0223 -0.3498 -1.5321 25 1 1.3519 -0.7039 -2.0400 26 1 2.8553 -2.7609 -1.5886 27 1 1.2929 -2.7375 -0.7243 28 1 4.0691 -2.0325 0.3884 29 1 2.8853 -3.2192 1.0325 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306682708.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:43 Heat of formation + Delta-G solvation = 16.178990 kcal Electronic energy + Delta-G solvation = -15098.447398 eV Core-core repulsion = 12535.014395 eV Total energy + Delta-G solvation = -2563.433003 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -45.06816 -38.23192 -36.08181 -35.39976 -33.09404 -31.68139 -28.66193 -27.54551 -25.47106 -23.58859 -22.92381 -21.29287 -19.65841 -17.97823 -17.62680 -17.23709 -16.63500 -16.43108 -15.47049 -15.00904 -14.81427 -14.41163 -13.80303 -13.71507 -13.55679 -13.33643 -13.09447 -12.56701 -12.42126 -12.24290 -12.21089 -11.96606 -11.79485 -11.70391 -11.41167 -11.01531 -10.80071 -10.27589 -8.96892 -8.75895 -7.10215 0.56335 1.02825 1.38795 1.39320 1.58439 1.62178 2.11509 2.14499 3.00362 3.02513 3.33539 3.42419 3.74405 3.95803 3.98635 4.24793 4.43840 4.57557 4.65466 4.69635 4.71443 4.89184 4.92396 4.93515 5.05201 5.23524 5.42013 5.86036 6.07309 6.27572 6.44407 8.05406 8.28643 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.049825 B = 0.006401 C = 0.006212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.830876 B = 4373.275845 C = 4506.081542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.086 3.914 3 C 0.185 3.815 4 N -0.487 5.487 5 O 0.012 5.988 6 C 0.271 3.729 7 C -0.435 4.435 8 H 0.118 0.882 9 C 0.030 3.970 10 N -0.796 5.796 11 Si 1.021 2.979 12 H -0.254 1.254 13 H -0.257 1.257 14 H -0.249 1.249 15 N -0.628 5.628 16 C -0.120 4.120 17 C -0.110 4.110 18 C -0.069 4.069 19 S -0.314 6.314 20 H 0.048 0.952 21 H 0.061 0.939 22 H 0.105 0.895 23 H 0.306 0.694 24 H 0.057 0.943 25 H 0.099 0.901 26 H 0.113 0.887 27 H 0.102 0.898 28 H 0.082 0.918 29 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.111 -8.812 -0.842 9.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.026 4.026 3 C -0.091 4.091 4 N -0.222 5.222 5 O -0.030 6.030 6 C 0.083 3.917 7 C -0.472 4.472 8 H 0.136 0.864 9 C -0.192 4.192 10 N -0.423 5.423 11 Si 0.837 3.163 12 H -0.178 1.178 13 H -0.180 1.180 14 H -0.173 1.173 15 N -0.373 5.373 16 C -0.160 4.160 17 C -0.148 4.148 18 C -0.217 4.217 19 S -0.087 6.087 20 H 0.067 0.933 21 H 0.080 0.920 22 H 0.124 0.876 23 H 0.117 0.883 24 H 0.076 0.924 25 H 0.117 0.883 26 H 0.131 0.869 27 H 0.121 0.879 28 H 0.101 0.899 29 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.100 -9.110 -0.261 9.352 hybrid contribution 0.471 0.988 -0.852 1.387 sum -1.629 -8.122 -1.113 8.358 Atomic orbital electron populations 1.21794 0.89233 1.04172 1.01938 1.21370 0.99103 0.86770 0.95328 1.25117 0.97439 0.98325 0.88172 1.74204 1.26092 0.95497 1.26448 1.85461 1.62552 1.22126 1.32869 1.24821 0.88743 0.95588 0.82576 1.19098 1.32792 0.91687 1.03657 0.86377 1.27365 0.91160 1.05205 0.95468 1.69685 1.22418 1.35709 1.14453 0.84627 0.80556 0.72773 0.78303 1.17817 1.18040 1.17257 1.72204 1.33817 1.01380 1.29897 1.22478 1.02205 0.95493 0.95784 1.22543 1.02624 0.94059 0.95604 1.24476 1.01244 0.98304 0.97674 1.87897 1.71149 1.32269 1.17428 0.93277 0.91974 0.87639 0.88255 0.92431 0.88276 0.86864 0.87921 0.89880 0.84767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.79 8.52 71.98 0.61 -3.17 15 2 C 0.09 3.38 1.07 -11.11 -0.01 3.36 15 3 C 0.19 9.73 6.49 138.60 0.90 10.63 15 4 N -0.49 -27.58 11.04 -56.61 -0.63 -28.21 15 5 O 0.01 0.71 9.74 64.22 0.63 1.34 15 6 C 0.27 16.37 7.82 85.06 0.66 17.03 15 7 C -0.44 -23.97 9.48 23.32 0.22 -23.75 15 8 H 0.12 6.15 7.85 -2.91 -0.02 6.13 15 9 C 0.03 1.46 5.50 85.43 0.47 1.93 15 10 N -0.80 -41.26 12.06 21.91 0.26 -40.99 15 11 Si 1.02 35.50 29.56 68.60 2.03 37.53 15 12 H -0.25 -8.44 7.11 99.48 0.71 -7.73 15 13 H -0.26 -8.23 7.11 99.48 0.71 -7.52 15 14 H -0.25 -8.36 7.11 99.48 0.71 -7.65 15 15 N -0.63 -36.63 11.61 -305.20 -3.54 -40.17 15 16 C -0.12 -3.79 5.29 31.32 0.17 -3.62 15 17 C -0.11 -2.34 6.46 31.62 0.20 -2.13 15 18 C -0.07 -1.71 7.38 72.71 0.54 -1.18 15 19 S -0.31 -11.77 22.11 -56.49 -1.25 -13.01 15 20 H 0.05 1.86 8.14 -2.39 -0.02 1.84 15 21 H 0.06 2.07 8.14 -2.39 -0.02 2.05 15 22 H 0.10 2.67 8.14 -2.39 -0.02 2.65 15 23 H 0.31 13.80 8.29 -92.71 -0.77 13.03 15 24 H 0.06 2.16 7.23 -2.39 -0.02 2.14 15 25 H 0.10 2.77 7.88 -2.39 -0.02 2.75 15 26 H 0.11 1.79 8.14 -2.39 -0.02 1.77 15 27 H 0.10 1.74 8.14 -2.39 -0.02 1.72 15 28 H 0.08 2.14 8.14 -2.39 -0.02 2.12 15 29 H 0.13 2.44 8.14 -2.39 -0.02 2.42 15 Total: -1.00 -71.15 263.69 2.42 -68.73 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: 1.16 Total: 15.70 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: 3.76 Total: -0.90 kcal Atomic # 7 Polarization: -105.47 SS G_CDS: -3.90 Total: -109.38 kcal Atomic # 8 Polarization: 0.71 SS G_CDS: 0.63 Total: 1.34 kcal Atomic # 14 Polarization: 35.50 SS G_CDS: 2.03 Total: 37.53 kcal Atomic # 16 Polarization: -11.77 SS G_CDS: -1.25 Total: -13.01 kcal Total: -71.15 2.42 -68.73 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306682708.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.908 kcal (2) G-P(sol) polarization free energy of solvation -71.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds