Wall clock time and date at job start Mon Mar 30 2020 03:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38249 * 120.74197 * 2 1 4 4 N 1.32415 * 119.27477 * 180.02562 * 3 2 1 5 5 C 1.32556 * 120.88214 * 0.02562 * 4 3 2 6 6 S 1.76190 * 119.19653 * 179.97438 * 5 4 3 7 7 C 1.81001 * 100.00222 * 359.97438 * 6 5 4 8 8 H 1.09006 * 109.47025 * 55.00299 * 7 6 5 9 9 C 1.52993 * 109.46980 * 295.00342 * 7 6 5 10 10 C 1.50692 * 109.47213 * 174.99825 * 7 6 5 11 11 H 1.08002 * 120.00617 * 5.46531 * 10 7 6 12 12 C 1.37878 * 120.00322 * 185.45753 * 10 7 6 13 13 N 1.31523 * 119.99535 * 9.57657 * 12 10 7 14 14 Si 1.86803 * 120.00530 * 189.57506 * 12 10 7 15 15 H 1.48492 * 109.47146 * 84.99414 * 14 12 10 16 16 H 1.48495 * 109.46933 * 204.99710 * 14 12 10 17 17 H 1.48502 * 109.46882 * 324.99486 * 14 12 10 18 18 N 1.32529 * 121.60839 * 0.24966 * 5 4 3 19 19 C 1.32740 * 120.63674 * 359.48677 * 18 5 4 20 20 O 1.35519 * 120.45921 * 180.26811 * 19 18 5 21 21 H 1.09000 * 109.47017 * 89.99719 * 1 2 3 22 22 H 1.09001 * 109.47208 * 210.00193 * 1 2 3 23 23 H 1.08993 * 109.47231 * 330.00198 * 1 2 3 24 24 H 1.08001 * 120.36724 * 359.97438 * 3 2 1 25 25 H 1.08995 * 109.47634 * 64.53485 * 9 7 6 26 26 H 1.09004 * 109.47139 * 184.53365 * 9 7 6 27 27 H 1.09004 * 109.47166 * 304.53030 * 9 7 6 28 28 H 0.96996 * 119.99617 * 180.02562 * 13 12 10 29 29 H 0.96690 * 114.00596 * 270.23615 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2137 1.1882 0.0000 4 7 3.5374 1.1543 -0.0005 5 6 4.1885 -0.0004 -0.0015 6 16 5.9503 0.0063 -0.0029 7 6 6.2579 1.7900 -0.0031 8 1 5.7394 2.2482 0.8392 9 6 5.7428 2.3962 -1.3100 10 6 7.7381 2.0445 0.1196 11 1 8.4318 1.2169 0.1018 12 6 8.2071 3.3341 0.2546 13 7 7.3643 4.3216 0.4652 14 14 10.0394 3.6787 0.1383 15 1 10.4233 3.8397 -1.2871 16 1 10.3566 4.9252 0.8803 17 1 10.7947 2.5449 0.7293 18 7 3.5464 -1.1597 -0.0070 19 6 2.2196 -1.1982 -0.0014 20 8 1.5668 -2.3858 -0.0016 21 1 -0.3633 0.0001 -1.0277 22 1 -0.3634 -0.8900 0.5139 23 1 -0.3633 0.8899 0.5138 24 1 1.6919 2.1338 -0.0004 25 1 4.6599 2.2831 -1.3610 26 1 5.9995 3.4549 -1.3455 27 1 6.2019 1.8824 -2.1546 28 1 7.6942 5.2288 0.5597 29 1 1.3767 -2.7301 -0.8849 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307419599.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:04 Heat of formation + Delta-G solvation = -1.675502 kcal Electronic energy + Delta-G solvation = -14620.645653 eV Core-core repulsion = 12056.438422 eV Total energy + Delta-G solvation = -2564.207231 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.76707 -37.50536 -34.04998 -33.59118 -32.42916 -30.36350 -27.49387 -25.23849 -24.04654 -22.86273 -21.33844 -19.29614 -17.94175 -16.93450 -16.12645 -15.36670 -14.78598 -14.51199 -14.15185 -13.85546 -13.41876 -13.08908 -12.72026 -12.41569 -12.06867 -11.99684 -11.41319 -10.98402 -10.92763 -10.58406 -10.41853 -10.29303 -10.03836 -9.42039 -9.26367 -8.97376 -8.86431 -8.47706 -6.94841 -6.19943 -4.25788 0.98105 1.26769 2.05819 3.25444 3.31320 3.31871 3.38761 3.62481 3.92543 4.33385 4.65743 4.87486 4.97121 5.00022 5.14407 5.47457 5.53194 5.81327 5.94530 6.34648 6.72748 6.85424 7.00590 7.12761 7.40783 7.45200 7.62575 7.77253 8.01465 8.23361 8.72836 9.36569 10.88686 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.053603 B = 0.005930 C = 0.005475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.231662 B = 4720.313269 C = 5113.197554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.240 4.240 3 C 0.172 3.828 4 N -0.508 5.508 5 C 0.324 3.676 6 S -0.036 6.036 7 C 0.089 3.911 8 H 0.069 0.931 9 C -0.132 4.132 10 C -0.520 4.520 11 H 0.066 0.934 12 C 0.076 3.924 13 N -0.879 5.879 14 Si 0.902 3.098 15 H -0.276 1.276 16 H -0.285 1.285 17 H -0.272 1.272 18 N -0.531 5.531 19 C 0.364 3.636 20 O -0.477 6.477 21 H 0.067 0.933 22 H 0.071 0.929 23 H 0.068 0.932 24 H 0.168 0.832 25 H 0.041 0.959 26 H 0.073 0.927 27 H 0.031 0.969 28 H 0.266 0.734 29 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.225 -6.086 -3.001 13.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.251 4.251 3 C 0.002 3.998 4 N -0.227 5.227 5 C -0.048 4.048 6 S 0.204 5.796 7 C -0.039 4.039 8 H 0.087 0.913 9 C -0.192 4.192 10 C -0.560 4.560 11 H 0.084 0.916 12 C -0.130 4.130 13 N -0.515 5.515 14 Si 0.729 3.271 15 H -0.202 1.202 16 H -0.210 1.210 17 H -0.196 1.196 18 N -0.258 5.258 19 C 0.172 3.828 20 O -0.283 6.283 21 H 0.086 0.914 22 H 0.090 0.910 23 H 0.087 0.913 24 H 0.185 0.815 25 H 0.060 0.940 26 H 0.092 0.908 27 H 0.050 0.950 28 H 0.075 0.925 29 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -10.320 -6.800 -2.359 12.582 hybrid contribution -0.991 1.099 -0.502 1.563 sum -11.311 -5.701 -2.861 12.985 Atomic orbital electron populations 1.20463 0.89291 1.03245 1.02134 1.21517 0.98959 0.94146 1.10512 1.23131 0.89647 0.97604 0.89376 1.69089 1.09258 1.28262 1.16051 1.25393 1.02530 0.84397 0.92511 1.85899 0.87236 1.19762 1.86700 1.21118 1.00059 0.83240 0.99452 0.91329 1.21993 0.98371 1.02566 0.96274 1.20612 0.89256 0.93097 1.53055 0.91619 1.24867 0.98348 0.95654 0.94091 1.69983 1.34581 1.00282 1.46643 0.86442 0.84383 0.77878 0.78412 1.20226 1.21046 1.19637 1.68115 1.09148 1.30298 1.18243 1.19257 0.86894 0.85123 0.91504 1.84673 1.74894 1.34895 1.33880 0.91447 0.90998 0.91267 0.81459 0.94025 0.90787 0.95009 0.92463 0.73992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.87 9.85 36.01 0.35 -0.51 15 2 C -0.24 -3.31 5.93 -104.18 -0.62 -3.92 15 3 C 0.17 2.66 10.99 -17.30 -0.19 2.47 15 4 N -0.51 -10.16 6.83 -13.51 -0.09 -10.25 15 5 C 0.32 6.83 7.68 -90.86 -0.70 6.13 15 6 S -0.04 -0.83 21.62 -107.50 -2.32 -3.15 15 7 C 0.09 2.27 1.99 -27.89 -0.06 2.22 15 8 H 0.07 1.91 7.89 -51.91 -0.41 1.50 15 9 C -0.13 -3.17 8.81 37.15 0.33 -2.85 15 10 C -0.52 -14.12 8.50 -34.44 -0.29 -14.42 15 11 H 0.07 1.77 7.73 -52.49 -0.41 1.37 15 12 C 0.08 2.04 5.16 -17.82 -0.09 1.95 15 13 N -0.88 -24.46 12.17 55.43 0.67 -23.78 15 14 Si 0.90 20.77 29.55 -169.99 -5.02 15.74 15 15 H -0.28 -6.28 7.11 56.52 0.40 -5.88 15 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 17 H -0.27 -6.20 7.11 56.52 0.40 -5.80 15 18 N -0.53 -10.35 10.42 -13.50 -0.14 -10.49 15 19 C 0.36 5.75 7.80 -16.72 -0.13 5.62 15 20 O -0.48 -5.96 12.74 -18.25 -0.23 -6.19 15 21 H 0.07 0.52 8.14 -51.93 -0.42 0.10 15 22 H 0.07 0.65 7.62 -51.93 -0.40 0.25 15 23 H 0.07 0.56 8.10 -51.93 -0.42 0.14 15 24 H 0.17 2.00 8.06 -52.49 -0.42 1.57 15 25 H 0.04 0.93 5.70 -51.93 -0.30 0.63 15 26 H 0.07 1.91 6.81 -51.93 -0.35 1.55 15 27 H 0.03 0.73 8.14 -51.93 -0.42 0.30 15 28 H 0.27 6.99 8.31 -40.82 -0.34 6.65 15 29 H 0.40 2.86 9.06 45.56 0.41 3.28 15 LS Contribution 266.94 15.07 4.02 4.02 Total: -1.00 -31.04 266.94 -6.78 -37.82 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: -2.27 Total: -0.41 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -1.39 Total: -3.31 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: 0.44 Total: -44.52 kcal Atomic # 8 Polarization: -5.96 SS G_CDS: -0.23 Total: -6.19 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: -0.83 SS G_CDS: -2.32 Total: -3.15 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -31.04 -6.78 -37.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307419599.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.143 kcal (2) G-P(sol) polarization free energy of solvation -31.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds