Wall clock time and date at job start Mon Mar 30 2020 03:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31740 * 123.76436 * 2 1 4 4 N 1.27575 * 118.27166 * 179.97438 * 3 2 1 5 5 S 1.56515 * 109.22053 * 0.02562 * 4 3 2 6 6 C 1.35341 * 123.76752 * 179.69842 * 2 1 3 7 7 C 1.50698 * 127.92156 * 359.97438 * 6 2 1 8 8 H 1.08997 * 109.87084 * 343.98775 * 7 6 2 9 9 C 1.54097 * 109.88379 * 104.99883 * 7 6 2 10 10 C 1.54810 * 104.19079 * 121.44918 * 9 7 6 11 11 C 1.54991 * 102.09004 * 20.88333 * 10 9 7 12 12 H 1.09000 * 110.61889 * 81.63424 * 11 10 9 13 13 C 1.50701 * 110.61637 * 204.47166 * 11 10 9 14 14 H 1.07998 * 120.00266 * 0.02562 * 13 11 10 15 15 C 1.37875 * 119.99854 * 179.97438 * 13 11 10 16 16 N 1.31517 * 119.99861 * 180.02562 * 15 13 11 17 17 Si 1.86797 * 120.00253 * 0.02562 * 15 13 11 18 18 H 1.48501 * 109.47128 * 89.99887 * 17 15 13 19 19 H 1.48498 * 109.47356 * 209.99799 * 17 15 13 20 20 H 1.48499 * 109.47166 * 330.00110 * 17 15 13 21 21 O 1.43749 * 109.87634 * 222.82977 * 7 6 2 22 22 H 1.09001 * 109.46953 * 90.02506 * 1 2 3 23 23 H 1.09000 * 109.47318 * 210.02104 * 1 2 3 24 24 H 1.09000 * 109.47161 * 330.02734 * 1 2 3 25 25 H 1.09002 * 110.48708 * 240.13319 * 9 7 6 26 26 H 1.09004 * 110.48337 * 2.64111 * 9 7 6 27 27 H 1.08998 * 110.90648 * 139.08195 * 10 9 7 28 28 H 1.08995 * 110.90667 * 262.68170 * 10 9 7 29 29 H 0.97003 * 120.00047 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2392 1.0952 0.0000 4 7 3.5091 0.9731 0.0005 5 16 3.8806 -0.5474 0.0004 6 6 2.2593 -1.1251 0.0059 7 6 1.7859 -2.5557 0.0140 8 1 0.7342 -2.5963 0.2974 9 6 1.9767 -3.1788 -1.3824 10 6 2.9013 -4.3950 -1.1322 11 6 2.6950 -4.6535 0.3821 12 1 1.7846 -5.2281 0.5528 13 6 3.8876 -5.3661 0.9660 14 1 4.7266 -5.6207 0.3355 15 6 3.9081 -5.6919 2.3056 16 7 4.9491 -6.3133 2.8153 17 14 2.4573 -5.2508 3.3964 18 1 1.4788 -6.3678 3.3944 19 1 2.9343 -5.0132 4.7825 20 1 1.8053 -4.0207 2.8796 21 8 2.5739 -3.3261 0.9370 22 1 -0.3633 -0.0004 -1.0277 23 1 -0.3634 -0.8898 0.5142 24 1 -0.3633 0.8902 0.5134 25 1 1.0192 -3.5046 -1.7889 26 1 2.4536 -2.4667 -2.0559 27 1 2.5810 -5.2547 -1.7207 28 1 3.9402 -4.1443 -1.3460 29 1 4.9633 -6.5429 3.7577 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307603566.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:21 Heat of formation + Delta-G solvation = 20.561165 kcal Electronic energy + Delta-G solvation = -15194.846238 eV Core-core repulsion = 12631.603261 eV Total energy + Delta-G solvation = -2563.242977 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 4.21 seconds Orbital eigenvalues (eV) -40.71738 -38.65529 -33.72463 -32.57363 -31.37346 -29.89389 -27.41791 -26.52633 -24.30675 -21.73448 -20.52874 -19.77870 -18.36620 -17.10047 -15.98354 -15.49329 -15.44092 -14.62713 -14.17472 -13.58258 -13.09732 -12.98010 -12.79055 -12.63614 -12.38976 -11.93683 -11.44305 -11.27863 -11.11632 -10.91056 -10.39501 -10.06906 -9.94134 -9.77475 -9.63808 -9.38250 -9.22342 -8.69189 -8.59202 -6.21967 -4.31454 0.47533 1.40727 2.01174 2.36629 3.28693 3.36764 3.55708 4.22328 4.40712 4.50146 4.87063 4.92678 5.21487 5.25065 5.32875 5.44282 5.50725 5.65206 5.81841 5.94516 6.00279 6.07341 6.22638 6.40222 6.49622 6.95493 7.46086 7.94100 7.96305 8.32149 8.79937 9.40532 10.88233 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.029722 B = 0.008300 C = 0.008251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.845816 B = 3372.639239 C = 3392.631389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.010 3.990 3 N -0.248 5.248 4 N -0.314 5.314 5 S 0.466 5.534 6 C -0.240 4.240 7 C 0.147 3.853 8 H 0.078 0.922 9 C -0.147 4.147 10 C -0.135 4.135 11 C 0.169 3.831 12 H 0.033 0.967 13 C -0.519 4.519 14 H 0.082 0.918 15 C 0.086 3.914 16 N -0.886 5.886 17 Si 0.869 3.131 18 H -0.281 1.281 19 H -0.289 1.289 20 H -0.233 1.233 21 O -0.367 6.367 22 H 0.078 0.922 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.126 8.019 -7.053 13.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.135 4.135 3 N -0.115 5.115 4 N -0.293 5.293 5 S 0.603 5.397 6 C -0.378 4.378 7 C 0.085 3.915 8 H 0.096 0.904 9 C -0.186 4.186 10 C -0.173 4.173 11 C 0.115 3.885 12 H 0.050 0.950 13 C -0.556 4.556 14 H 0.100 0.900 15 C -0.120 4.120 16 N -0.522 5.522 17 Si 0.695 3.305 18 H -0.208 1.208 19 H -0.215 1.215 20 H -0.156 1.156 21 O -0.287 6.287 22 H 0.097 0.903 23 H 0.098 0.902 24 H 0.097 0.903 25 H 0.093 0.907 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.326 9.163 -6.697 12.993 hybrid contribution -2.123 -0.486 0.579 2.253 sum -8.448 8.677 -6.119 13.568 Atomic orbital electron populations 1.20243 0.85439 1.03772 1.03189 1.22145 1.00089 0.86699 1.04578 1.71185 0.97105 1.27780 1.15407 1.78626 1.10315 1.16615 1.23746 1.81798 1.09284 0.98744 1.49870 1.27288 0.99810 1.02077 1.08671 1.20767 0.95623 0.83575 0.91503 0.90418 1.23035 1.01044 0.98709 0.95822 1.23048 0.99443 0.95828 0.98995 1.21222 0.97412 0.80828 0.89080 0.94988 1.20892 1.03678 1.35521 0.95506 0.89998 1.25061 0.96033 0.92831 0.98041 1.69907 1.29477 1.38897 1.13954 0.86971 0.83189 0.80681 0.79651 1.20766 1.21490 1.15593 1.89383 1.71355 1.24976 1.43011 0.90304 0.90155 0.90316 0.90748 0.91582 0.91134 0.90782 0.92304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.74 10.15 36.01 0.37 -0.37 15 2 C 0.01 0.16 6.89 -83.66 -0.58 -0.42 15 3 N -0.25 -4.26 11.68 32.45 0.38 -3.88 15 4 N -0.31 -5.48 12.54 60.35 0.76 -4.72 15 5 S 0.47 7.68 23.35 -107.50 -2.51 5.17 15 6 C -0.24 -3.95 5.36 -35.34 -0.19 -4.14 15 7 C 0.15 2.48 3.80 -27.31 -0.10 2.38 15 8 H 0.08 1.18 6.84 -51.93 -0.35 0.83 15 9 C -0.15 -2.18 6.63 -25.20 -0.17 -2.34 15 10 C -0.14 -2.40 6.55 -24.73 -0.16 -2.56 15 11 C 0.17 3.74 2.52 -26.83 -0.07 3.67 15 12 H 0.03 0.70 7.46 -51.93 -0.39 0.32 15 13 C -0.52 -13.93 9.39 -34.44 -0.32 -14.25 15 14 H 0.08 2.35 8.01 -52.49 -0.42 1.93 15 15 C 0.09 2.40 5.47 -17.82 -0.10 2.30 15 16 N -0.89 -26.23 13.96 55.43 0.77 -25.46 15 17 Si 0.87 21.06 27.06 -169.99 -4.60 16.46 15 18 H -0.28 -6.65 7.11 56.52 0.40 -6.24 15 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 15 20 H -0.23 -5.48 5.62 56.52 0.32 -5.16 15 21 O -0.37 -8.00 8.35 -35.23 -0.29 -8.30 15 22 H 0.08 0.73 8.14 -51.93 -0.42 0.31 15 23 H 0.08 0.83 6.94 -51.93 -0.36 0.47 15 24 H 0.08 0.81 8.14 -51.93 -0.42 0.38 15 25 H 0.07 0.92 8.14 -51.93 -0.42 0.49 15 26 H 0.07 0.90 7.69 -51.93 -0.40 0.51 15 27 H 0.07 1.13 8.14 -51.93 -0.42 0.70 15 28 H 0.07 1.36 8.04 -51.93 -0.42 0.94 15 29 H 0.27 7.44 8.31 -40.82 -0.34 7.10 15 LS Contribution 259.41 15.07 3.91 3.91 Total: -1.00 -30.55 259.41 -6.16 -36.70 By element: Atomic # 1 Polarization: -0.88 SS G_CDS: -3.25 Total: -4.13 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: -1.32 Total: -15.75 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: 1.91 Total: -34.06 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: -0.29 Total: -8.30 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.60 Total: 16.46 kcal Atomic # 16 Polarization: 7.68 SS G_CDS: -2.51 Total: 5.17 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.55 -6.16 -36.70 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307603566.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.264 kcal (2) G-P(sol) polarization free energy of solvation -30.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.21 seconds