Wall clock time and date at job start Mon Mar 30 2020 03:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31740 * 123.76436 * 2 1 4 4 N 1.27575 * 118.27166 * 179.97438 * 3 2 1 5 5 S 1.56515 * 109.22053 * 0.02562 * 4 3 2 6 6 C 1.35341 * 123.76752 * 179.69842 * 2 1 3 7 7 C 1.50698 * 127.92156 * 359.97438 * 6 2 1 8 8 H 1.08997 * 109.87084 * 343.98775 * 7 6 2 9 9 C 1.54097 * 109.88379 * 104.99883 * 7 6 2 10 10 C 1.54810 * 104.19079 * 121.44918 * 9 7 6 11 11 C 1.54991 * 102.09004 * 20.88333 * 10 9 7 12 12 H 1.09000 * 110.61889 * 81.63424 * 11 10 9 13 13 C 1.50701 * 110.61637 * 204.47166 * 11 10 9 14 14 H 1.07998 * 120.00266 * 0.02562 * 13 11 10 15 15 C 1.37875 * 119.99854 * 179.97438 * 13 11 10 16 16 N 1.31517 * 119.99861 * 180.02562 * 15 13 11 17 17 Si 1.86797 * 120.00253 * 0.02562 * 15 13 11 18 18 H 1.48501 * 109.47128 * 89.99887 * 17 15 13 19 19 H 1.48498 * 109.47356 * 209.99799 * 17 15 13 20 20 H 1.48499 * 109.47166 * 330.00110 * 17 15 13 21 21 O 1.43749 * 109.87634 * 222.82977 * 7 6 2 22 22 H 1.09001 * 109.46953 * 90.02506 * 1 2 3 23 23 H 1.09000 * 109.47318 * 210.02104 * 1 2 3 24 24 H 1.09000 * 109.47161 * 330.02734 * 1 2 3 25 25 H 1.09002 * 110.48708 * 240.13319 * 9 7 6 26 26 H 1.09004 * 110.48337 * 2.64111 * 9 7 6 27 27 H 1.08998 * 110.90648 * 139.08195 * 10 9 7 28 28 H 1.08995 * 110.90667 * 262.68170 * 10 9 7 29 29 H 0.97003 * 120.00047 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2392 1.0952 0.0000 4 7 3.5091 0.9731 0.0005 5 16 3.8806 -0.5474 0.0004 6 6 2.2593 -1.1251 0.0059 7 6 1.7859 -2.5557 0.0140 8 1 0.7342 -2.5963 0.2974 9 6 1.9767 -3.1788 -1.3824 10 6 2.9013 -4.3950 -1.1322 11 6 2.6950 -4.6535 0.3821 12 1 1.7846 -5.2281 0.5528 13 6 3.8876 -5.3661 0.9660 14 1 4.7266 -5.6207 0.3355 15 6 3.9081 -5.6919 2.3056 16 7 4.9491 -6.3133 2.8153 17 14 2.4573 -5.2508 3.3964 18 1 1.4788 -6.3678 3.3944 19 1 2.9343 -5.0132 4.7825 20 1 1.8053 -4.0207 2.8796 21 8 2.5739 -3.3261 0.9370 22 1 -0.3633 -0.0004 -1.0277 23 1 -0.3634 -0.8898 0.5142 24 1 -0.3633 0.8902 0.5134 25 1 1.0192 -3.5046 -1.7889 26 1 2.4536 -2.4667 -2.0559 27 1 2.5810 -5.2547 -1.7207 28 1 3.9402 -4.1443 -1.3460 29 1 4.9633 -6.5429 3.7577 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307603566.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:18 Heat of formation + Delta-G solvation = -0.254646 kcal Electronic energy + Delta-G solvation = -15195.748879 eV Core-core repulsion = 12631.603261 eV Total energy + Delta-G solvation = -2564.145618 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 3.16 seconds Orbital eigenvalues (eV) -41.96550 -40.15090 -35.17105 -34.40497 -32.79827 -31.35381 -28.74282 -27.82980 -25.89029 -23.12223 -22.10804 -21.07050 -19.61028 -19.04080 -17.36265 -17.09983 -16.72617 -16.03584 -15.92987 -14.87167 -14.72390 -14.37357 -14.04133 -13.86877 -13.54692 -13.35467 -12.88051 -12.67455 -12.57613 -12.41972 -12.09952 -11.74661 -11.48935 -11.38733 -11.11428 -10.77672 -10.66771 -10.51881 -10.17891 -8.34063 -6.46945 -0.80620 0.16776 0.74341 1.16229 1.37555 1.42433 1.65190 2.40833 2.85297 3.09787 3.39289 3.67830 3.70436 4.03317 4.09529 4.35303 4.46654 4.48908 4.69630 4.76107 4.83928 4.95581 5.03952 5.16982 5.20883 5.42363 5.53607 6.22062 6.33917 6.69404 6.71478 7.29016 8.80006 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.029722 B = 0.008300 C = 0.008251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.845816 B = 3372.639239 C = 3392.631389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.019 3.981 3 N -0.266 5.266 4 N -0.330 5.330 5 S 0.455 5.545 6 C -0.250 4.250 7 C 0.141 3.859 8 H 0.107 0.893 9 C -0.134 4.134 10 C -0.133 4.133 11 C 0.167 3.833 12 H 0.043 0.957 13 C -0.525 4.525 14 H 0.044 0.956 15 C 0.028 3.972 16 N -0.938 5.938 17 Si 0.932 3.068 18 H -0.268 1.268 19 H -0.298 1.298 20 H -0.217 1.217 21 O -0.395 6.395 22 H 0.104 0.896 23 H 0.094 0.906 24 H 0.087 0.913 25 H 0.112 0.888 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.056 0.944 29 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.209 8.949 -7.961 16.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.126 4.126 3 N -0.132 5.132 4 N -0.308 5.308 5 S 0.592 5.408 6 C -0.389 4.389 7 C 0.080 3.920 8 H 0.124 0.876 9 C -0.172 4.172 10 C -0.171 4.171 11 C 0.112 3.888 12 H 0.061 0.939 13 C -0.562 4.562 14 H 0.062 0.938 15 C -0.172 4.172 16 N -0.577 5.577 17 Si 0.755 3.245 18 H -0.194 1.194 19 H -0.225 1.225 20 H -0.140 1.140 21 O -0.315 6.315 22 H 0.122 0.878 23 H 0.113 0.887 24 H 0.105 0.895 25 H 0.130 0.870 26 H 0.096 0.904 27 H 0.108 0.892 28 H 0.075 0.925 29 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.419 10.112 -7.632 15.787 hybrid contribution -1.129 -0.732 0.782 1.556 sum -10.548 9.380 -6.850 15.690 Atomic orbital electron populations 1.20489 0.82266 1.04912 1.05148 1.22739 1.01826 0.85579 1.02462 1.71207 0.97108 1.28845 1.16055 1.78609 1.10846 1.17050 1.24333 1.81849 1.10343 0.98702 1.49918 1.27357 0.99393 1.02332 1.09809 1.21097 0.96182 0.82958 0.91752 0.87558 1.23016 1.02159 0.97112 0.94935 1.22972 0.99596 0.98220 0.96317 1.21082 0.95446 0.80895 0.91359 0.93902 1.21209 1.04206 1.35666 0.95098 0.93780 1.25942 0.98611 0.92941 0.99739 1.70051 1.31943 1.41424 1.14319 0.86000 0.80154 0.81275 0.77058 1.19358 1.22460 1.13954 1.89256 1.72762 1.24918 1.44600 0.87807 0.88742 0.89451 0.87000 0.90448 0.89203 0.92491 0.92397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.21 10.15 71.24 0.72 -0.49 15 2 C 0.02 0.54 6.89 41.91 0.29 0.82 15 3 N -0.27 -8.61 11.68 -51.26 -0.60 -9.21 15 4 N -0.33 -11.20 12.54 37.02 0.46 -10.73 15 5 S 0.46 14.60 23.35 -56.49 -1.32 13.28 15 6 C -0.25 -7.54 5.36 25.02 0.13 -7.40 15 7 C 0.14 4.22 3.80 30.22 0.11 4.33 15 8 H 0.11 2.63 6.84 -2.39 -0.02 2.61 15 9 C -0.13 -3.38 6.63 31.58 0.21 -3.17 15 10 C -0.13 -4.43 6.55 31.89 0.21 -4.22 15 11 C 0.17 7.10 2.52 30.53 0.08 7.18 15 12 H 0.04 1.75 7.46 -2.39 -0.02 1.73 15 13 C -0.52 -28.62 9.39 25.60 0.24 -28.38 15 14 H 0.04 2.65 8.01 -2.91 -0.02 2.63 15 15 C 0.03 1.56 5.47 84.65 0.46 2.03 15 16 N -0.94 -57.46 13.96 21.45 0.30 -57.16 15 17 Si 0.93 43.31 27.06 68.60 1.86 45.16 15 18 H -0.27 -11.77 7.11 99.48 0.71 -11.07 15 19 H -0.30 -14.15 7.11 99.48 0.71 -13.44 15 20 H -0.22 -9.47 5.62 99.48 0.56 -8.91 15 21 O -0.39 -16.30 8.35 -148.98 -1.24 -17.55 15 22 H 0.10 1.38 8.14 -2.39 -0.02 1.36 15 23 H 0.09 1.44 6.94 -2.39 -0.02 1.43 15 24 H 0.09 1.43 8.14 -2.39 -0.02 1.41 15 25 H 0.11 2.06 8.14 -2.39 -0.02 2.04 15 26 H 0.08 1.81 7.69 -2.38 -0.02 1.80 15 27 H 0.09 2.62 8.14 -2.39 -0.02 2.60 15 28 H 0.06 2.06 8.04 -2.39 -0.02 2.04 15 29 H 0.27 15.39 8.31 -92.71 -0.77 14.62 15 Total: -1.00 -67.59 259.41 2.93 -64.66 By element: Atomic # 1 Polarization: -0.16 SS G_CDS: 1.01 Total: 0.85 kcal Atomic # 6 Polarization: -31.77 SS G_CDS: 2.46 Total: -29.31 kcal Atomic # 7 Polarization: -77.27 SS G_CDS: 0.16 Total: -77.10 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -1.24 Total: -17.55 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.86 Total: 45.16 kcal Atomic # 16 Polarization: 14.60 SS G_CDS: -1.32 Total: 13.28 kcal Total: -67.59 2.93 -64.66 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307603566.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.405 kcal (2) G-P(sol) polarization free energy of solvation -67.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.16 seconds