Wall clock time and date at job start Mon Mar 30 2020 04:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 119.99578 * 2 1 4 4 H 1.48502 * 109.47132 * 269.99562 * 3 2 1 5 5 H 1.48495 * 109.47615 * 29.99529 * 3 2 1 6 6 H 1.48498 * 109.47059 * 149.99867 * 3 2 1 7 7 C 1.37870 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00196 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00130 * 180.02562 * 7 2 1 10 10 S 1.81391 * 109.47353 * 180.02562 * 9 7 2 11 11 C 1.76204 * 102.99965 * 179.97438 * 10 9 7 12 12 N 1.31078 * 126.01021 * 359.97438 * 11 10 9 13 13 N 1.40104 * 107.99253 * 179.77787 * 12 11 10 14 14 C 1.31035 * 108.00495 * 0.38236 * 13 12 11 15 15 N 1.38894 * 125.98654 * 179.89392 * 14 13 12 16 16 N 1.36611 * 108.01882 * 359.62549 * 14 13 12 17 17 C 1.46493 * 125.99812 * 180.22326 * 16 14 13 18 18 C 1.53005 * 117.49957 * 197.98267 * 17 16 14 19 19 C 1.53002 * 117.50071 * 129.32255 * 17 16 14 20 20 H 0.96995 * 120.00587 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47090 * 59.99466 * 9 7 2 22 22 H 1.09003 * 109.46662 * 300.00140 * 9 7 2 23 23 H 0.97001 * 119.99903 * 174.31015 * 15 14 13 24 24 H 0.96999 * 120.00383 * 354.02573 * 15 14 13 25 25 H 1.09004 * 115.55248 * 343.65171 * 17 16 14 26 26 H 1.08998 * 117.49585 * 0.02562 * 18 17 16 27 27 H 1.08998 * 117.50056 * 145.01403 * 18 17 16 28 28 H 1.09000 * 117.49922 * 214.97752 * 19 17 16 29 29 H 1.09001 * 117.49889 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 16 4.1163 -2.9042 0.0010 11 6 5.8671 -2.7055 0.0009 12 7 6.5133 -1.5651 0.0005 13 7 7.8860 -1.8455 0.0058 14 6 8.0334 -3.1475 0.0010 15 7 9.2420 -3.8320 0.0017 16 7 6.7901 -3.7136 0.0012 17 6 6.4976 -5.1490 0.0012 18 6 5.0916 -5.5836 -0.4175 19 6 5.5140 -5.6696 1.0513 20 1 -0.4851 0.8400 -0.0004 21 1 3.8746 -0.6799 0.8911 22 1 3.8752 -0.6803 -0.8889 23 1 9.2518 -4.7987 0.0811 24 1 10.0760 -3.3437 -0.0814 25 1 7.3283 -5.7982 -0.2757 26 1 4.3844 -4.8014 -0.6935 27 1 4.9973 -6.5186 -0.9697 28 1 5.6975 -6.6612 1.4649 29 1 5.0849 -4.9440 1.7423 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308648360.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:08 Heat of formation + Delta-G solvation = 113.638792 kcal Electronic energy + Delta-G solvation = -14680.369723 eV Core-core repulsion = 12153.455646 eV Total energy + Delta-G solvation = -2526.914077 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.074 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.62561 -37.33618 -34.73224 -33.07516 -31.70237 -29.56545 -28.96502 -23.71502 -22.80400 -22.59060 -21.91736 -20.60738 -17.95165 -17.27885 -16.81088 -16.04491 -15.69627 -15.22801 -14.81937 -14.25903 -13.61565 -13.34053 -12.85344 -12.39153 -11.89454 -11.65625 -11.29941 -11.11590 -10.83933 -10.74425 -10.70417 -10.47033 -10.11358 -9.74680 -9.33854 -9.15124 -8.74306 -8.55769 -6.96442 -6.21119 -4.25830 1.57613 2.19411 2.50454 2.88836 3.17935 3.30824 3.38505 3.45996 3.48503 3.61877 4.35123 4.37236 4.52144 4.70696 5.12459 5.14479 5.50445 5.51844 5.58879 5.90868 6.07812 6.19815 6.52959 6.70473 6.73992 7.26053 7.37015 7.39755 8.21647 8.50238 8.74943 9.34823 10.89800 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.033289 B = 0.007268 C = 0.006074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.929276 B = 3851.759240 C = 4608.829156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.087 3.913 3 Si 0.874 3.126 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.258 1.258 7 C -0.522 4.522 8 H 0.084 0.916 9 C 0.018 3.982 10 S -0.008 6.008 11 C 0.208 3.792 12 N -0.307 5.307 13 N -0.375 5.375 14 C 0.477 3.523 15 N -0.834 5.834 16 N -0.482 5.482 17 C 0.047 3.953 18 C -0.179 4.179 19 C -0.176 4.176 20 H 0.269 0.731 21 H 0.050 0.950 22 H 0.045 0.955 23 H 0.405 0.595 24 H 0.422 0.578 25 H 0.137 0.863 26 H 0.131 0.869 27 H 0.112 0.888 28 H 0.108 0.892 29 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.442 -13.383 0.203 19.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.118 4.118 3 Si 0.700 3.300 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.562 4.562 8 H 0.102 0.898 9 C -0.130 4.130 10 S 0.220 5.780 11 C -0.173 4.173 12 N -0.139 5.139 13 N -0.215 5.215 14 C 0.111 3.889 15 N -0.392 5.392 16 N -0.189 5.189 17 C -0.059 4.059 18 C -0.217 4.217 19 C -0.214 4.214 20 H 0.079 0.921 21 H 0.068 0.932 22 H 0.064 0.936 23 H 0.234 0.766 24 H 0.254 0.746 25 H 0.155 0.845 26 H 0.148 0.852 27 H 0.130 0.870 28 H 0.126 0.874 29 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 13.951 -12.450 0.211 18.700 hybrid contribution 1.290 0.349 -0.040 1.337 sum 15.241 -12.101 0.171 19.462 Atomic orbital electron populations 1.69850 1.06169 1.27571 1.48968 1.24761 0.94699 0.98801 0.93588 0.86835 0.80727 0.83181 0.79258 1.19683 1.20812 1.18256 1.20324 0.86345 0.95426 1.54068 0.89795 1.21880 1.00622 0.89136 1.01332 1.85343 0.83248 1.17880 1.91485 1.26850 0.99480 0.86453 1.04565 1.78262 0.95819 1.17883 1.21984 1.78076 1.07527 1.05822 1.30055 1.20853 0.81051 0.89190 0.97785 1.40887 1.02545 1.08901 1.86858 1.45592 1.03576 1.06132 1.63556 1.21898 0.96204 0.79494 1.08280 1.23876 0.95509 1.04430 0.97932 1.23524 1.01488 1.03181 0.93245 0.92061 0.93187 0.93640 0.76580 0.74598 0.84517 0.85176 0.86986 0.87378 0.87072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.47 13.96 55.43 0.77 -25.70 15 2 C 0.09 2.48 5.47 -17.82 -0.10 2.38 15 3 Si 0.87 21.66 27.47 -169.99 -4.67 16.99 15 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 15 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 15 6 H -0.26 -6.39 6.54 56.52 0.37 -6.02 15 7 C -0.52 -14.55 9.68 -34.44 -0.33 -14.88 15 8 H 0.08 2.47 7.96 -52.49 -0.42 2.05 15 9 C 0.02 0.45 4.40 36.01 0.16 0.61 15 10 S -0.01 -0.17 17.12 -107.50 -1.84 -2.01 15 11 C 0.21 4.14 7.91 -88.37 -0.70 3.44 15 12 N -0.31 -6.94 12.29 30.67 0.38 -6.57 15 13 N -0.38 -7.55 12.72 30.38 0.39 -7.17 15 14 C 0.48 7.48 9.14 -318.42 -2.91 4.57 15 15 N -0.83 -7.94 9.08 30.37 0.28 -7.66 15 16 N -0.48 -7.64 3.13 -110.35 -0.35 -7.99 15 17 C 0.05 0.52 6.70 -67.93 -0.46 0.07 15 18 C -0.18 -2.01 9.67 -26.69 -0.26 -2.27 15 19 C -0.18 -1.85 9.93 -26.69 -0.26 -2.12 15 20 H 0.27 7.48 8.31 -40.82 -0.34 7.14 15 21 H 0.05 1.28 7.20 -51.92 -0.37 0.90 15 22 H 0.05 1.15 7.57 -51.92 -0.39 0.75 15 23 H 0.40 2.51 8.09 -40.82 -0.33 2.18 15 24 H 0.42 3.30 8.95 -40.82 -0.37 2.93 15 25 H 0.14 1.02 7.48 -51.93 -0.39 0.63 15 26 H 0.13 1.88 4.28 -26.31 -0.11 1.77 15 27 H 0.11 0.93 8.14 -51.93 -0.42 0.51 15 28 H 0.11 0.81 8.14 -51.93 -0.42 0.38 15 29 H 0.11 1.44 7.67 -51.93 -0.40 1.05 15 LS Contribution 263.20 15.07 3.97 3.97 Total: -1.00 -34.01 263.20 -8.73 -42.74 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -2.79 Total: 1.60 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -4.86 Total: -8.20 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: 1.47 Total: -55.08 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Atomic # 16 Polarization: -0.17 SS G_CDS: -1.84 Total: -2.01 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -34.01 -8.73 -42.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308648360.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.375 kcal (2) G-P(sol) polarization free energy of solvation -34.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds