Wall clock time and date at job start Mon Mar 30 2020 04:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 119.99578 * 2 1 4 4 H 1.48502 * 109.47132 * 269.99562 * 3 2 1 5 5 H 1.48495 * 109.47615 * 29.99529 * 3 2 1 6 6 H 1.48498 * 109.47059 * 149.99867 * 3 2 1 7 7 C 1.37870 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00196 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00130 * 180.02562 * 7 2 1 10 10 S 1.81391 * 109.47353 * 180.02562 * 9 7 2 11 11 C 1.76204 * 102.99965 * 179.97438 * 10 9 7 12 12 N 1.31078 * 126.01021 * 359.97438 * 11 10 9 13 13 N 1.40104 * 107.99253 * 179.77787 * 12 11 10 14 14 C 1.31035 * 108.00495 * 0.38236 * 13 12 11 15 15 N 1.38894 * 125.98654 * 179.89392 * 14 13 12 16 16 N 1.36611 * 108.01882 * 359.62549 * 14 13 12 17 17 C 1.46493 * 125.99812 * 180.22326 * 16 14 13 18 18 C 1.53005 * 117.49957 * 197.98267 * 17 16 14 19 19 C 1.53002 * 117.50071 * 129.32255 * 17 16 14 20 20 H 0.96995 * 120.00587 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47090 * 59.99466 * 9 7 2 22 22 H 1.09003 * 109.46662 * 300.00140 * 9 7 2 23 23 H 0.97001 * 119.99903 * 174.31015 * 15 14 13 24 24 H 0.96999 * 120.00383 * 354.02573 * 15 14 13 25 25 H 1.09004 * 115.55248 * 343.65171 * 17 16 14 26 26 H 1.08998 * 117.49585 * 0.02562 * 18 17 16 27 27 H 1.08998 * 117.50056 * 145.01403 * 18 17 16 28 28 H 1.09000 * 117.49922 * 214.97752 * 19 17 16 29 29 H 1.09001 * 117.49889 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 16 4.1163 -2.9042 0.0010 11 6 5.8671 -2.7055 0.0009 12 7 6.5133 -1.5651 0.0005 13 7 7.8860 -1.8455 0.0058 14 6 8.0334 -3.1475 0.0010 15 7 9.2420 -3.8320 0.0017 16 7 6.7901 -3.7136 0.0012 17 6 6.4976 -5.1490 0.0012 18 6 5.0916 -5.5836 -0.4175 19 6 5.5140 -5.6696 1.0513 20 1 -0.4851 0.8400 -0.0004 21 1 3.8746 -0.6799 0.8911 22 1 3.8752 -0.6803 -0.8889 23 1 9.2518 -4.7987 0.0811 24 1 10.0760 -3.3437 -0.0814 25 1 7.3283 -5.7982 -0.2757 26 1 4.3844 -4.8014 -0.6935 27 1 4.9973 -6.5186 -0.9697 28 1 5.6975 -6.6612 1.4649 29 1 5.0849 -4.9440 1.7423 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308648360.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:05 Heat of formation + Delta-G solvation = 91.372195 kcal Electronic energy + Delta-G solvation = -14681.335276 eV Core-core repulsion = 12153.455646 eV Total energy + Delta-G solvation = -2527.879629 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.074 amu Computer time = 2.78 seconds Orbital eigenvalues (eV) -42.92790 -38.31103 -35.79854 -35.24287 -32.93726 -31.55561 -30.41276 -24.93758 -24.76758 -23.57236 -23.10318 -21.88058 -19.20027 -18.96571 -18.26609 -17.20304 -16.96426 -16.56582 -16.18204 -15.75421 -15.33749 -14.79489 -14.51068 -14.40883 -12.98978 -12.86897 -12.71117 -12.68598 -12.46139 -12.17302 -12.12250 -12.07620 -11.81849 -11.52874 -10.94430 -10.86857 -10.53154 -9.76493 -8.51555 -8.41610 -6.50731 0.05049 0.82573 1.28888 1.32088 1.33305 1.45968 1.49460 1.53643 2.27421 2.52921 2.72884 2.92266 3.41256 3.72956 3.85129 4.06112 4.23960 4.67201 4.67661 4.69244 4.77061 4.89810 5.09126 5.18054 5.26464 5.49282 5.99953 6.30557 6.46459 6.51578 7.13697 7.25541 8.72617 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.033289 B = 0.007268 C = 0.006074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.929276 B = 3851.759240 C = 4608.829156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.038 3.962 3 Si 0.934 3.066 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.262 1.262 7 C -0.526 4.526 8 H 0.057 0.943 9 C 0.006 3.994 10 S 0.037 5.963 11 C 0.194 3.806 12 N -0.356 5.356 13 N -0.421 5.421 14 C 0.491 3.509 15 N -0.801 5.801 16 N -0.479 5.479 17 C 0.036 3.964 18 C -0.185 4.185 19 C -0.169 4.169 20 H 0.275 0.725 21 H 0.037 0.963 22 H 0.036 0.964 23 H 0.425 0.575 24 H 0.433 0.567 25 H 0.187 0.813 26 H 0.095 0.905 27 H 0.149 0.851 28 H 0.149 0.851 29 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.803 -15.527 0.129 22.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.164 4.164 3 Si 0.758 3.242 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.186 1.186 7 C -0.566 4.566 8 H 0.075 0.925 9 C -0.142 4.142 10 S 0.266 5.734 11 C -0.189 4.189 12 N -0.189 5.189 13 N -0.263 5.263 14 C 0.124 3.876 15 N -0.363 5.363 16 N -0.185 5.185 17 C -0.067 4.067 18 C -0.224 4.224 19 C -0.207 4.207 20 H 0.084 0.916 21 H 0.055 0.945 22 H 0.055 0.945 23 H 0.259 0.741 24 H 0.267 0.733 25 H 0.204 0.796 26 H 0.113 0.887 27 H 0.167 0.833 28 H 0.167 0.833 29 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 16.343 -14.654 0.138 21.951 hybrid contribution 0.650 0.793 -0.008 1.026 sum 16.994 -13.861 0.130 21.930 Atomic orbital electron populations 1.69950 1.07589 1.28775 1.50254 1.25559 0.95436 1.02197 0.93233 0.85886 0.79311 0.79414 0.79618 1.18857 1.19504 1.18599 1.20476 0.88061 0.94555 1.53460 0.92451 1.21625 0.98848 0.93565 1.00143 1.85182 0.83788 1.12556 1.91882 1.26679 0.99520 0.87523 1.05145 1.78126 0.97540 1.19914 1.23363 1.77928 1.06327 1.08599 1.33426 1.21113 0.82526 0.88600 0.95316 1.40926 1.00677 1.09906 1.84790 1.45723 1.02691 1.07383 1.62681 1.22587 0.97950 0.77282 1.08839 1.23873 0.94567 1.04770 0.99157 1.23605 1.00482 1.04320 0.92338 0.91583 0.94491 0.94546 0.74087 0.73270 0.79645 0.88738 0.83289 0.83346 0.90041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.49 13.96 21.45 0.30 -56.19 15 2 C 0.04 2.20 5.47 84.65 0.46 2.66 15 3 Si 0.93 45.62 27.47 68.60 1.88 47.50 15 4 H -0.26 -12.46 7.11 99.48 0.71 -11.76 15 5 H -0.27 -12.54 7.11 99.48 0.71 -11.83 15 6 H -0.26 -12.83 6.54 99.48 0.65 -12.18 15 7 C -0.53 -30.35 9.68 25.60 0.25 -30.10 15 8 H 0.06 3.52 7.96 -2.91 -0.02 3.50 15 9 C 0.01 0.33 4.40 71.24 0.31 0.64 15 10 S 0.04 1.52 17.12 -56.49 -0.97 0.56 15 11 C 0.19 7.71 7.91 179.56 1.42 9.13 15 12 N -0.36 -16.33 12.29 -56.87 -0.70 -17.03 15 13 N -0.42 -16.77 12.72 -57.80 -0.74 -17.51 15 14 C 0.49 14.29 9.14 259.95 2.38 16.66 15 15 N -0.80 -12.12 9.08 -57.82 -0.53 -12.65 15 16 N -0.48 -14.17 3.13 -503.04 -1.57 -15.75 15 17 C 0.04 0.67 6.70 45.00 0.30 0.98 15 18 C -0.18 -3.60 9.67 30.62 0.30 -3.30 15 19 C -0.17 -3.00 9.93 30.62 0.30 -2.69 15 20 H 0.27 15.51 8.31 -92.71 -0.77 14.74 15 21 H 0.04 1.95 7.20 -2.39 -0.02 1.93 15 22 H 0.04 1.89 7.57 -2.39 -0.02 1.88 15 23 H 0.43 3.04 8.09 -92.71 -0.75 2.29 15 24 H 0.43 5.18 8.95 -92.71 -0.83 4.35 15 25 H 0.19 1.58 7.48 -2.38 -0.02 1.56 15 26 H 0.10 2.62 4.28 -18.68 -0.08 2.54 15 27 H 0.15 1.80 8.14 -2.39 -0.02 1.78 15 28 H 0.15 1.45 8.14 -2.39 -0.02 1.43 15 29 H 0.08 1.99 7.67 -2.39 -0.02 1.97 15 Total: -1.00 -77.78 263.20 2.91 -74.87 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -0.50 Total: 2.21 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: 5.72 Total: -6.02 kcal Atomic # 7 Polarization: -115.88 SS G_CDS: -3.23 Total: -119.12 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.88 Total: 47.50 kcal Atomic # 16 Polarization: 1.52 SS G_CDS: -0.97 Total: 0.56 kcal Total: -77.78 2.91 -74.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308648360.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.244 kcal (2) G-P(sol) polarization free energy of solvation -77.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.78 seconds