Wall clock time and date at job start Mon Mar 30 2020 03:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34759 * 117.00060 * 2 1 4 4 O 1.21521 * 119.99855 * 0.02562 * 3 2 1 5 5 C 1.47398 * 120.00271 * 180.02562 * 3 2 1 6 6 C 1.39733 * 120.18967 * 0.02866 * 5 3 2 7 7 C 1.38015 * 119.88627 * 179.97438 * 6 5 3 8 8 F 1.35102 * 119.86012 * 179.97438 * 7 6 5 9 9 C 1.38782 * 120.27682 * 359.97438 * 7 6 5 10 10 C 1.38001 * 120.39464 * 359.72382 * 9 7 6 11 11 C 1.38828 * 120.10342 * 0.55886 * 10 9 7 12 12 O 1.35532 * 120.14114 * 179.71644 * 11 10 9 13 13 C 1.34805 * 116.99857 * 354.40016 * 12 11 10 14 14 H 1.07997 * 119.99956 * 5.05824 * 13 12 11 15 15 C 1.38699 * 119.99934 * 185.06204 * 13 12 11 16 16 N 1.31523 * 119.99738 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00122 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46707 * 60.00055 * 17 15 13 19 19 H 1.48494 * 109.47207 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47075 * 300.00065 * 17 15 13 21 21 H 1.08996 * 109.47368 * 59.99812 * 1 2 3 22 22 H 1.09001 * 109.47149 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47070 * 299.99642 * 1 2 3 24 24 H 1.08001 * 120.05592 * 359.95287 * 6 5 3 25 25 H 1.08004 * 119.80324 * 180.02562 * 9 7 6 26 26 H 1.08004 * 119.95159 * 180.29802 * 10 9 7 27 27 H 0.96998 * 119.99941 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4020 2.2199 0.0005 5 6 3.5358 1.2779 -0.0006 6 6 4.3007 0.1086 -0.0017 7 6 5.6786 0.1881 -0.0028 8 9 6.4177 -0.9428 -0.0034 9 6 6.3080 1.4250 -0.0033 10 6 5.5638 2.5872 -0.0084 11 6 4.1769 2.5259 -0.0014 12 8 3.4453 3.6668 -0.0007 13 6 4.1218 4.8275 0.1103 14 1 5.2018 4.8251 0.1112 15 6 3.4309 6.0248 0.2235 16 7 2.1156 6.0277 0.2220 17 14 4.3682 7.6332 0.3780 18 1 5.2237 7.8246 -0.8207 19 1 3.4056 8.7590 0.4834 20 1 5.2205 7.5946 1.5935 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 3.8146 -0.8559 -0.0014 25 1 7.3868 1.4784 -0.0045 26 1 6.0611 3.5459 -0.0136 27 1 1.6324 6.8650 0.3008 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308795360.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:25 Heat of formation + Delta-G solvation = -128.207772 kcal Electronic energy + Delta-G solvation = -16722.916800 eV Core-core repulsion = 13554.716790 eV Total energy + Delta-G solvation = -3168.200010 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.063 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -48.14670 -39.88066 -38.70376 -36.36179 -35.54016 -32.52397 -31.02933 -28.66711 -27.29170 -25.54985 -23.58443 -21.80247 -20.35899 -18.34288 -17.77597 -16.92356 -16.26263 -15.71457 -15.26500 -15.14203 -14.90935 -14.70248 -13.98000 -13.77001 -13.42818 -12.88053 -12.59269 -12.54007 -11.91810 -11.76538 -11.53591 -11.29270 -11.01161 -10.78726 -10.60703 -10.20136 -9.93435 -9.38693 -9.00566 -8.60031 -7.39545 -6.63848 -4.22595 1.36033 1.99107 3.02468 3.04122 3.07582 3.29691 3.33098 3.78912 4.31098 4.85841 4.94496 4.98137 5.30048 5.40567 5.47849 5.55371 5.67674 5.89424 5.90015 6.37351 6.42865 6.57717 6.71780 6.86273 6.99475 7.14438 7.48343 7.73251 8.61812 8.75156 9.41258 10.49002 Molecular weight = 240.06amu Principal moments of inertia in cm(-1) A = 0.020628 B = 0.008955 C = 0.006270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.038015 B = 3125.885881 C = 4464.719767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.370 6.370 3 C 0.498 3.502 4 O -0.473 6.473 5 C -0.196 4.196 6 C -0.042 4.042 7 C -0.028 4.028 8 F -0.157 7.157 9 C -0.070 4.070 10 C -0.211 4.211 11 C 0.180 3.820 12 O -0.116 6.116 13 C -0.404 4.404 14 H 0.098 0.902 15 C 0.046 3.954 16 N -0.826 5.826 17 Si 0.946 3.054 18 H -0.267 1.267 19 H -0.275 1.275 20 H -0.266 1.266 21 H 0.058 0.942 22 H 0.093 0.907 23 H 0.058 0.942 24 H 0.137 0.863 25 H 0.126 0.874 26 H 0.145 0.855 27 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.744 -7.142 -0.125 7.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.289 6.289 3 C 0.343 3.657 4 O -0.359 6.359 5 C -0.199 4.199 6 C -0.062 4.062 7 C -0.048 4.048 8 F -0.136 7.136 9 C -0.089 4.089 10 C -0.230 4.230 11 C 0.120 3.880 12 O -0.014 6.014 13 C -0.479 4.479 14 H 0.116 0.884 15 C -0.163 4.163 16 N -0.456 5.456 17 Si 0.769 3.231 18 H -0.191 1.191 19 H -0.200 1.200 20 H -0.191 1.191 21 H 0.077 0.923 22 H 0.111 0.889 23 H 0.077 0.923 24 H 0.155 0.845 25 H 0.144 0.856 26 H 0.162 0.838 27 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.027 -6.589 -0.127 6.895 hybrid contribution 0.445 0.608 0.064 0.756 sum 2.472 -5.981 -0.063 6.472 Atomic orbital electron populations 1.23087 0.77373 1.02547 1.02379 1.86512 1.22466 1.33977 1.85901 1.20930 0.88878 0.81237 0.74694 1.91011 1.65928 1.34953 1.44017 1.17741 0.88728 0.91283 1.22125 1.20897 0.91686 0.97986 0.95595 1.17037 0.88786 0.81950 1.16988 1.91389 1.76983 1.49704 1.95500 1.20948 0.99887 0.90863 0.97243 1.20970 0.92822 0.98902 1.10318 1.19201 0.89948 0.86903 0.91971 1.84149 1.33861 1.11068 1.72274 1.21551 0.92076 0.81477 1.52767 0.88424 1.25469 0.95901 0.99217 0.95744 1.70105 1.06204 1.28444 1.40873 0.85714 0.78816 0.79095 0.79480 1.19140 1.20002 1.19126 0.92311 0.88888 0.92282 0.84493 0.85601 0.83795 0.91410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 10.57 101.05 1.07 1.65 15 2 O -0.37 -6.81 9.82 -40.65 -0.40 -7.21 15 3 C 0.50 11.18 7.89 34.46 0.27 11.45 15 4 O -0.47 -12.53 14.96 -26.60 -0.40 -12.93 15 5 C -0.20 -4.29 5.89 -104.83 -0.62 -4.90 15 6 C -0.04 -0.79 9.59 -39.11 -0.37 -1.17 15 7 C -0.03 -0.50 7.29 -39.46 -0.29 -0.79 15 8 F -0.16 -2.71 17.26 2.25 0.04 -2.67 15 9 C -0.07 -1.24 10.01 -39.47 -0.39 -1.63 15 10 C -0.21 -4.27 9.16 -39.45 -0.36 -4.63 15 11 C 0.18 4.29 6.66 -38.59 -0.26 4.03 15 12 O -0.12 -3.26 7.83 -21.09 -0.17 -3.43 15 13 C -0.40 -10.76 9.49 30.90 0.29 -10.47 15 14 H 0.10 2.31 5.20 -52.49 -0.27 2.04 15 15 C 0.05 1.21 5.49 -17.51 -0.10 1.12 15 16 N -0.83 -23.72 13.67 55.48 0.76 -22.96 15 17 Si 0.95 19.36 29.55 -169.99 -5.02 14.34 15 18 H -0.27 -5.25 7.11 56.52 0.40 -4.85 15 19 H -0.28 -5.54 7.11 56.52 0.40 -5.14 15 20 H -0.27 -5.26 7.11 56.52 0.40 -4.86 15 21 H 0.06 0.86 8.14 -51.93 -0.42 0.44 15 22 H 0.09 0.97 8.14 -51.93 -0.42 0.55 15 23 H 0.06 0.87 8.14 -51.93 -0.42 0.44 15 24 H 0.14 2.24 7.61 -52.49 -0.40 1.84 15 25 H 0.13 1.81 8.06 -52.48 -0.42 1.39 15 26 H 0.14 2.76 5.64 -52.48 -0.30 2.47 15 27 H 0.28 7.21 8.31 -40.82 -0.34 6.87 15 LS Contribution 255.66 15.07 3.85 3.85 Total: -1.00 -31.28 255.66 -3.88 -35.17 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -1.79 Total: 1.18 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -0.76 Total: -5.34 kcal Atomic # 7 Polarization: -23.72 SS G_CDS: 0.76 Total: -22.96 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.96 Total: -23.57 kcal Atomic # 9 Polarization: -2.71 SS G_CDS: 0.04 Total: -2.67 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.34 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -31.28 -3.88 -35.17 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308795360.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.040 kcal (2) G-P(sol) polarization free energy of solvation -31.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds