Wall clock time and date at job start Mon Mar 30 2020 03:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34759 * 117.00060 * 2 1 4 4 O 1.21521 * 119.99855 * 0.02562 * 3 2 1 5 5 C 1.47398 * 120.00271 * 180.02562 * 3 2 1 6 6 C 1.39733 * 120.18967 * 0.02866 * 5 3 2 7 7 C 1.38015 * 119.88627 * 179.97438 * 6 5 3 8 8 F 1.35102 * 119.86012 * 179.97438 * 7 6 5 9 9 C 1.38782 * 120.27682 * 359.97438 * 7 6 5 10 10 C 1.38001 * 120.39464 * 359.72382 * 9 7 6 11 11 C 1.38828 * 120.10342 * 0.55886 * 10 9 7 12 12 O 1.35532 * 120.14114 * 179.71644 * 11 10 9 13 13 C 1.34805 * 116.99857 * 354.40016 * 12 11 10 14 14 H 1.07997 * 119.99956 * 5.05824 * 13 12 11 15 15 C 1.38699 * 119.99934 * 185.06204 * 13 12 11 16 16 N 1.31523 * 119.99738 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00122 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46707 * 60.00055 * 17 15 13 19 19 H 1.48494 * 109.47207 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47075 * 300.00065 * 17 15 13 21 21 H 1.08996 * 109.47368 * 59.99812 * 1 2 3 22 22 H 1.09001 * 109.47149 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47070 * 299.99642 * 1 2 3 24 24 H 1.08001 * 120.05592 * 359.95287 * 6 5 3 25 25 H 1.08004 * 119.80324 * 180.02562 * 9 7 6 26 26 H 1.08004 * 119.95159 * 180.29802 * 10 9 7 27 27 H 0.96998 * 119.99941 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4020 2.2199 0.0005 5 6 3.5358 1.2779 -0.0006 6 6 4.3007 0.1086 -0.0017 7 6 5.6786 0.1881 -0.0028 8 9 6.4177 -0.9428 -0.0034 9 6 6.3080 1.4250 -0.0033 10 6 5.5638 2.5872 -0.0084 11 6 4.1769 2.5259 -0.0014 12 8 3.4453 3.6668 -0.0007 13 6 4.1218 4.8275 0.1103 14 1 5.2018 4.8251 0.1112 15 6 3.4309 6.0248 0.2235 16 7 2.1156 6.0277 0.2220 17 14 4.3682 7.6332 0.3780 18 1 5.2237 7.8246 -0.8207 19 1 3.4056 8.7590 0.4834 20 1 5.2205 7.5946 1.5935 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 3.8146 -0.8559 -0.0014 25 1 7.3868 1.4784 -0.0045 26 1 6.0611 3.5459 -0.0136 27 1 1.6324 6.8650 0.3008 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308795360.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:23 Heat of formation + Delta-G solvation = -147.896354 kcal Electronic energy + Delta-G solvation = -16723.770561 eV Core-core repulsion = 13554.716790 eV Total energy + Delta-G solvation = -3169.053771 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.063 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -49.63342 -41.59020 -40.41265 -38.06235 -37.24899 -34.39615 -32.64509 -30.33104 -28.64792 -27.40788 -25.18055 -23.47097 -21.99062 -20.13086 -19.42657 -18.62187 -17.93920 -17.31397 -16.83465 -16.72825 -16.40279 -16.34525 -15.59932 -15.50641 -15.10089 -14.39043 -14.19277 -14.11433 -13.54453 -13.44327 -12.91209 -12.90016 -12.59252 -12.36567 -12.16874 -11.75648 -11.72781 -11.14204 -10.83640 -10.18212 -9.10099 -8.51624 -6.21900 -0.26723 0.37298 1.36693 1.47856 1.54138 1.60166 1.80087 2.13466 2.63639 3.03764 3.23274 3.37256 3.80680 3.90749 4.23334 4.29701 4.33635 4.38273 4.63193 4.77872 4.86817 4.93969 5.04233 5.25329 5.31747 5.46390 5.87324 5.92461 6.86052 6.92696 7.61941 8.67314 Molecular weight = 240.06amu Principal moments of inertia in cm(-1) A = 0.020628 B = 0.008955 C = 0.006270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.038015 B = 3125.885881 C = 4464.719767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.360 6.360 3 C 0.499 3.501 4 O -0.524 6.524 5 C -0.211 4.211 6 C -0.036 4.036 7 C -0.006 4.006 8 F -0.143 7.143 9 C -0.051 4.051 10 C -0.216 4.216 11 C 0.156 3.844 12 O -0.175 6.175 13 C -0.429 4.429 14 H 0.119 0.881 15 C -0.016 4.016 16 N -0.898 5.898 17 Si 1.025 2.975 18 H -0.252 1.252 19 H -0.276 1.276 20 H -0.252 1.252 21 H 0.053 0.947 22 H 0.144 0.856 23 H 0.052 0.948 24 H 0.165 0.835 25 H 0.170 0.830 26 H 0.153 0.847 27 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.270 -9.069 -0.084 10.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.277 6.277 3 C 0.346 3.654 4 O -0.414 6.414 5 C -0.214 4.214 6 C -0.054 4.054 7 C -0.025 4.025 8 F -0.122 7.122 9 C -0.069 4.069 10 C -0.235 4.235 11 C 0.099 3.901 12 O -0.076 6.076 13 C -0.504 4.504 14 H 0.136 0.864 15 C -0.217 4.217 16 N -0.532 5.532 17 Si 0.842 3.158 18 H -0.175 1.175 19 H -0.201 1.201 20 H -0.176 1.176 21 H 0.072 0.928 22 H 0.162 0.838 23 H 0.071 0.929 24 H 0.182 0.818 25 H 0.188 0.812 26 H 0.170 0.830 27 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.597 -8.610 -0.090 9.761 hybrid contribution -0.244 0.711 0.037 0.752 sum 4.353 -7.899 -0.053 9.019 Atomic orbital electron populations 1.23501 0.74980 1.05706 1.01941 1.86488 1.24718 1.31518 1.84971 1.21182 0.89330 0.81546 0.73347 1.91003 1.67052 1.36903 1.46427 1.18058 0.89020 0.91929 1.22385 1.21110 0.92047 0.97873 0.94405 1.17139 0.88613 0.82540 1.14258 1.91446 1.76539 1.49045 1.95171 1.21338 1.01938 0.89413 0.94240 1.21121 0.91445 1.00515 1.10394 1.19893 0.91719 0.86809 0.91681 1.84163 1.35448 1.12220 1.75732 1.22156 0.93183 0.81773 1.53321 0.86386 1.26819 0.96750 1.03190 0.94958 1.70284 1.08555 1.29283 1.45083 0.84576 0.77345 0.73523 0.80313 1.17544 1.20074 1.17585 0.92809 0.83774 0.92871 0.81766 0.81217 0.82993 0.91609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.89 10.57 113.37 1.20 2.09 15 2 O -0.36 -12.85 9.82 -56.70 -0.56 -13.40 15 3 C 0.50 22.83 7.89 70.23 0.55 23.38 15 4 O -0.52 -29.27 14.96 26.77 0.40 -28.87 15 5 C -0.21 -9.17 5.89 -20.00 -0.12 -9.29 15 6 C -0.04 -1.22 9.59 22.58 0.22 -1.00 15 7 C -0.01 -0.18 7.29 22.35 0.16 -0.02 15 8 F -0.14 -4.18 17.26 44.97 0.78 -3.40 15 9 C -0.05 -1.57 10.01 22.34 0.22 -1.34 15 10 C -0.22 -8.37 9.16 22.35 0.20 -8.17 15 11 C 0.16 7.51 6.66 22.91 0.15 7.66 15 12 O -0.17 -10.30 7.83 0.83 0.01 -10.29 15 13 C -0.43 -23.78 9.49 67.93 0.64 -23.14 15 14 H 0.12 5.65 5.20 -2.91 -0.02 5.63 15 15 C -0.02 -0.89 5.49 84.85 0.47 -0.43 15 16 N -0.90 -55.02 13.67 21.62 0.30 -54.72 15 17 Si 1.02 40.63 29.55 68.60 2.03 42.66 15 18 H -0.25 -9.20 7.11 99.48 0.71 -8.49 15 19 H -0.28 -10.76 7.11 99.48 0.71 -10.05 15 20 H -0.25 -9.23 7.11 99.48 0.71 -8.52 15 21 H 0.05 1.56 8.14 -2.39 -0.02 1.54 15 22 H 0.14 2.53 8.14 -2.39 -0.02 2.51 15 23 H 0.05 1.55 8.14 -2.39 -0.02 1.54 15 24 H 0.16 4.71 7.61 -2.91 -0.02 4.69 15 25 H 0.17 3.84 8.06 -2.91 -0.02 3.82 15 26 H 0.15 5.60 5.64 -2.91 -0.02 5.58 15 27 H 0.27 15.43 8.31 -92.71 -0.77 14.66 15 Total: -1.00 -73.26 255.66 7.87 -65.39 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 1.21 Total: 12.91 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: 3.70 Total: -10.27 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: 0.30 Total: -54.72 kcal Atomic # 8 Polarization: -52.42 SS G_CDS: -0.15 Total: -52.56 kcal Atomic # 9 Polarization: -4.18 SS G_CDS: 0.78 Total: -3.40 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.66 kcal Total: -73.26 7.87 -65.39 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308795360.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.508 kcal (2) G-P(sol) polarization free energy of solvation -73.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds