Wall clock time and date at job start Mon Mar 30 2020 04:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47470 * 2 1 4 4 C 1.50706 * 109.46895 * 239.99921 * 2 1 3 5 5 H 1.07998 * 119.99999 * 239.99823 * 4 2 1 6 6 C 1.37874 * 119.99967 * 60.00109 * 4 2 1 7 7 N 1.31513 * 119.99873 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00098 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46963 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47197 * 120.00060 * 8 6 4 11 11 H 1.48503 * 109.47206 * 240.00150 * 8 6 4 12 12 N 1.46901 * 109.47220 * 120.00322 * 2 1 3 13 13 C 1.46899 * 110.99663 * 274.99873 * 12 2 1 14 14 C 1.50707 * 109.46955 * 179.97438 * 13 12 2 15 15 C 1.34516 * 125.78774 * 89.99894 * 14 13 12 16 16 C 1.41376 * 106.84089 * 179.97438 * 15 14 13 17 17 C 1.34515 * 106.84242 * 0.02562 * 16 15 14 18 18 N 1.48037 * 125.79546 * 179.73453 * 17 16 15 19 19 O 1.21805 * 119.99395 * 0.02562 * 18 17 16 20 20 O 1.21797 * 120.00424 * 179.97438 * 18 17 16 21 21 O 1.34298 * 125.79155 * 269.97115 * 14 13 12 22 22 H 1.09006 * 109.47143 * 299.99893 * 1 2 3 23 23 H 1.08998 * 109.47456 * 59.99668 * 1 2 3 24 24 H 1.09002 * 109.47470 * 180.02562 * 1 2 3 25 25 H 0.97004 * 120.00274 * 180.02562 * 7 6 4 26 26 H 1.00901 * 111.00426 * 151.04301 * 12 2 1 27 27 H 1.09003 * 109.47484 * 59.99921 * 13 12 2 28 28 H 1.09004 * 109.47354 * 299.99924 * 13 12 2 29 29 H 1.08004 * 126.58023 * 359.96223 * 15 14 13 30 30 H 1.07995 * 126.58185 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 3.1482 -2.2857 -3.6038 10 1 1.1676 -1.5866 -4.8165 11 1 3.1471 -0.1858 -4.8161 12 7 2.0196 -0.6926 1.1994 13 6 2.0824 0.2225 2.3468 14 6 2.5874 -0.5219 3.5560 15 6 3.8759 -0.6474 3.9212 16 6 3.8927 -1.4181 5.1062 17 6 2.6134 -1.7181 5.3941 18 7 2.1509 -2.5187 6.5502 19 8 2.9598 -2.9690 7.3417 20 8 0.9615 -2.7264 6.7105 21 8 1.8271 -1.1722 4.4520 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 0.7080 1.1608 -3.4844 26 1 2.9173 -1.1206 1.0287 27 1 1.0871 0.6163 2.5525 28 1 2.7589 1.0462 2.1182 29 1 4.7333 -0.2380 3.4075 30 1 4.7651 -1.7100 5.6719 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308924289.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:28 Heat of formation + Delta-G solvation = 21.514519 kcal Electronic energy + Delta-G solvation = -16479.071807 eV Core-core repulsion = 13473.117300 eV Total energy + Delta-G solvation = -3005.954508 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.094 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.40740 -41.98040 -36.79904 -36.40810 -33.76080 -33.08141 -31.20892 -28.95911 -26.64963 -25.38168 -23.97365 -22.43510 -21.15311 -20.07768 -19.73927 -18.77665 -18.02965 -17.10763 -16.32672 -15.72092 -14.89732 -14.29767 -14.11788 -13.82120 -13.64628 -13.42292 -12.51347 -12.02667 -11.84538 -11.50850 -11.38790 -11.36794 -11.03020 -10.91261 -10.62437 -10.53929 -10.31430 -10.22549 -9.27483 -9.01639 -8.64722 -7.69458 -6.18823 -4.26559 -0.21161 0.50857 1.43775 2.03626 2.79030 3.19509 3.28292 3.31690 4.23650 4.27056 4.33704 4.78152 5.05274 5.14340 5.15550 5.25273 5.43888 5.62942 5.87575 6.09325 6.36340 6.64079 6.92362 6.98603 7.21303 7.47996 7.58890 7.65441 8.01636 8.08945 8.34761 8.80703 9.40437 10.87459 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.045886 B = 0.004445 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.061744 B = 6298.037345 C = 6424.018452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.213 3.787 3 H 0.008 0.992 4 C -0.524 4.524 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.284 1.284 12 N -0.683 5.683 13 C 0.121 3.879 14 C 0.105 3.895 15 C -0.227 4.227 16 C -0.070 4.070 17 C -0.007 4.007 18 N 0.071 4.929 19 O -0.142 6.142 20 O -0.139 6.139 21 O -0.141 6.141 22 H 0.006 0.994 23 H 0.084 0.916 24 H 0.034 0.966 25 H 0.263 0.737 26 H 0.338 0.662 27 H 0.095 0.905 28 H 0.073 0.927 29 H 0.174 0.826 30 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.853 -0.638 11.897 13.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.107 3.893 3 H 0.025 0.975 4 C -0.562 4.562 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.210 1.210 12 N -0.316 5.316 13 C -0.008 4.008 14 C 0.050 3.950 15 C -0.247 4.247 16 C -0.092 4.092 17 C -0.140 4.140 18 N 0.591 4.409 19 O -0.354 6.354 20 O -0.358 6.358 21 O -0.035 6.035 22 H 0.025 0.975 23 H 0.103 0.897 24 H 0.053 0.947 25 H 0.073 0.927 26 H 0.156 0.844 27 H 0.113 0.887 28 H 0.091 0.909 29 H 0.192 0.808 30 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 5.050 -0.413 11.371 12.448 hybrid contribution 1.001 -0.143 -0.759 1.264 sum 6.051 -0.556 10.612 12.228 Atomic orbital electron populations 1.21765 0.97415 0.99795 0.99698 1.19204 0.92949 0.92496 0.84677 0.97474 1.21218 1.32027 1.12811 0.90150 0.91980 1.24908 0.94842 0.94930 0.99149 1.69889 1.36216 1.22758 1.23712 0.86418 0.78692 0.79583 0.82591 1.19705 1.20824 1.20972 1.60860 1.32777 1.32406 1.05550 1.20791 1.02446 0.92568 0.85017 1.23602 0.89243 0.91979 0.90188 1.21836 0.97908 1.06449 0.98511 1.21772 0.94895 0.95828 0.96704 1.22171 0.88853 1.09982 0.93001 1.42161 1.00971 0.98591 0.99221 1.94587 1.51916 1.51749 1.37190 1.94629 0.99465 1.62275 1.79473 1.84019 1.36732 1.53346 1.29431 0.97514 0.89699 0.94654 0.92734 0.84420 0.88718 0.90928 0.80810 0.80582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 9.19 37.16 0.34 -2.66 16 2 C 0.21 4.94 2.60 -68.86 -0.18 4.76 16 3 H 0.01 0.19 7.80 -51.93 -0.40 -0.22 16 4 C -0.52 -13.45 8.59 -34.44 -0.30 -13.74 16 5 H 0.06 1.58 7.62 -52.49 -0.40 1.18 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.03 11.32 55.43 0.63 -23.40 16 8 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 9 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 12 N -0.68 -13.08 6.29 -109.21 -0.69 -13.76 16 13 C 0.12 1.84 6.01 -4.97 -0.03 1.81 16 14 C 0.10 1.45 6.83 -35.62 -0.24 1.21 16 15 C -0.23 -2.55 10.81 -39.70 -0.43 -2.97 16 16 C -0.07 -0.79 10.57 -39.71 -0.42 -1.21 16 17 C -0.01 -0.10 8.24 -10.94 -0.09 -0.19 16 18 N 0.07 1.08 4.46 32.63 0.15 1.22 16 19 O -0.14 -2.02 19.01 -29.46 -0.56 -2.58 16 20 O -0.14 -2.28 19.26 -32.37 -0.62 -2.91 16 21 O -0.14 -2.22 10.65 0.97 0.01 -2.21 16 22 H 0.01 0.12 7.45 -51.93 -0.39 -0.26 16 23 H 0.08 2.17 6.07 -51.93 -0.32 1.86 16 24 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 26 H 0.34 6.19 8.22 -39.29 -0.32 5.87 16 27 H 0.09 1.47 7.44 -51.93 -0.39 1.08 16 28 H 0.07 0.98 8.06 -51.93 -0.42 0.56 16 29 H 0.17 1.48 8.06 -52.48 -0.42 1.05 16 30 H 0.18 1.43 8.06 -52.49 -0.42 1.00 16 LS Contribution 275.20 15.07 4.15 4.15 Total: -1.00 -27.86 275.20 -6.44 -34.30 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -3.04 Total: 1.35 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: -1.44 Total: -11.42 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: 0.09 Total: -35.94 kcal Atomic # 8 Polarization: -6.53 SS G_CDS: -1.17 Total: -7.70 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -27.86 -6.44 -34.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308924289.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.815 kcal (2) G-P(sol) polarization free energy of solvation -27.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds