Wall clock time and date at job start Mon Mar 30 2020 04:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47470 * 2 1 4 4 C 1.50706 * 109.46895 * 239.99921 * 2 1 3 5 5 H 1.07998 * 119.99999 * 239.99823 * 4 2 1 6 6 C 1.37874 * 119.99967 * 60.00109 * 4 2 1 7 7 N 1.31513 * 119.99873 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00098 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46963 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47197 * 120.00060 * 8 6 4 11 11 H 1.48503 * 109.47206 * 240.00150 * 8 6 4 12 12 N 1.46901 * 109.47220 * 120.00322 * 2 1 3 13 13 C 1.46899 * 110.99663 * 274.99873 * 12 2 1 14 14 C 1.50707 * 109.46955 * 179.97438 * 13 12 2 15 15 C 1.34516 * 125.78774 * 89.99894 * 14 13 12 16 16 C 1.41376 * 106.84089 * 179.97438 * 15 14 13 17 17 C 1.34515 * 106.84242 * 0.02562 * 16 15 14 18 18 N 1.48037 * 125.79546 * 179.73453 * 17 16 15 19 19 O 1.21805 * 119.99395 * 0.02562 * 18 17 16 20 20 O 1.21797 * 120.00424 * 179.97438 * 18 17 16 21 21 O 1.34298 * 125.79155 * 269.97115 * 14 13 12 22 22 H 1.09006 * 109.47143 * 299.99893 * 1 2 3 23 23 H 1.08998 * 109.47456 * 59.99668 * 1 2 3 24 24 H 1.09002 * 109.47470 * 180.02562 * 1 2 3 25 25 H 0.97004 * 120.00274 * 180.02562 * 7 6 4 26 26 H 1.00901 * 111.00426 * 151.04301 * 12 2 1 27 27 H 1.09003 * 109.47484 * 59.99921 * 13 12 2 28 28 H 1.09004 * 109.47354 * 299.99924 * 13 12 2 29 29 H 1.08004 * 126.58023 * 359.96223 * 15 14 13 30 30 H 1.07995 * 126.58185 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 3.1482 -2.2857 -3.6038 10 1 1.1676 -1.5866 -4.8165 11 1 3.1471 -0.1858 -4.8161 12 7 2.0196 -0.6926 1.1994 13 6 2.0824 0.2225 2.3468 14 6 2.5874 -0.5219 3.5560 15 6 3.8759 -0.6474 3.9212 16 6 3.8927 -1.4181 5.1062 17 6 2.6134 -1.7181 5.3941 18 7 2.1509 -2.5187 6.5502 19 8 2.9598 -2.9690 7.3417 20 8 0.9615 -2.7264 6.7105 21 8 1.8271 -1.1722 4.4520 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 0.7080 1.1608 -3.4844 26 1 2.9173 -1.1206 1.0287 27 1 1.0871 0.6163 2.5525 28 1 2.7589 1.0462 2.1182 29 1 4.7333 -0.2380 3.4075 30 1 4.7651 -1.7100 5.6719 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308924289.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:28 Heat of formation + Delta-G solvation = 3.789577 kcal Electronic energy + Delta-G solvation = -16479.840419 eV Core-core repulsion = 13473.117300 eV Total energy + Delta-G solvation = -3006.723119 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.094 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.45899 -43.11090 -38.01759 -37.91787 -35.04090 -34.55006 -32.61556 -30.46107 -28.04469 -27.24204 -25.24530 -23.45739 -22.29097 -21.82771 -20.80013 -19.90786 -19.15929 -18.81444 -17.48368 -17.22956 -16.59423 -15.74699 -15.37919 -15.13074 -14.95966 -14.34021 -14.19219 -13.60304 -13.09610 -13.00704 -12.77909 -12.69670 -12.61420 -12.53848 -12.35680 -12.23326 -12.00382 -11.55999 -10.95360 -10.61394 -10.31306 -9.24951 -8.16057 -6.29758 -1.31725 -0.53887 0.35456 1.09827 1.41726 1.45392 1.55299 1.72759 2.40808 3.14077 3.21724 3.38249 3.68370 3.79647 4.06043 4.28996 4.46739 4.52841 4.77427 4.91687 5.01108 5.04069 5.14303 5.34279 5.38264 5.63069 5.79344 6.17839 6.31746 6.33880 6.63405 6.90699 7.40888 8.89634 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.045886 B = 0.004445 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.061744 B = 6298.037345 C = 6424.018452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.219 3.781 3 H -0.009 1.009 4 C -0.538 4.538 5 H 0.061 0.939 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.960 3.040 9 H -0.267 1.267 10 H -0.285 1.285 11 H -0.279 1.279 12 N -0.690 5.690 13 C 0.124 3.876 14 C 0.086 3.914 15 C -0.201 4.201 16 C -0.041 4.041 17 C -0.033 4.033 18 N 0.071 4.929 19 O -0.106 6.106 20 O -0.204 6.204 21 O -0.173 6.173 22 H 0.025 0.975 23 H 0.060 0.940 24 H 0.023 0.977 25 H 0.263 0.737 26 H 0.343 0.657 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.210 0.790 30 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.329 -0.836 12.265 14.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.111 3.889 3 H 0.009 0.991 4 C -0.576 4.576 5 H 0.079 0.921 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.786 3.214 9 H -0.191 1.191 10 H -0.211 1.211 11 H -0.205 1.205 12 N -0.323 5.323 13 C -0.004 4.004 14 C 0.032 3.968 15 C -0.221 4.221 16 C -0.062 4.062 17 C -0.166 4.166 18 N 0.587 4.413 19 O -0.330 6.330 20 O -0.407 6.407 21 O -0.069 6.069 22 H 0.044 0.956 23 H 0.079 0.921 24 H 0.042 0.958 25 H 0.072 0.928 26 H 0.162 0.838 27 H 0.104 0.896 28 H 0.114 0.886 29 H 0.226 0.774 30 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 7.399 -0.612 11.733 13.885 hybrid contribution 0.378 -0.065 -0.795 0.883 sum 7.776 -0.676 10.938 13.437 Atomic orbital electron populations 1.21623 0.97994 0.98840 0.99414 1.18948 0.92502 0.91643 0.85807 0.99131 1.21561 1.31875 1.12822 0.91359 0.92077 1.25657 0.95095 0.95599 1.01901 1.70003 1.37210 1.23956 1.24250 0.85472 0.78031 0.78658 0.79234 1.19109 1.21068 1.20474 1.60640 1.33326 1.33193 1.05130 1.20716 1.02902 0.92627 0.84197 1.23453 0.90218 0.93004 0.90109 1.22271 0.97510 1.04563 0.97756 1.22331 0.94512 0.93389 0.96009 1.22433 0.89679 1.11339 0.93135 1.42303 1.00780 0.98599 0.99601 1.94536 1.51466 1.50157 1.36833 1.94647 1.00138 1.64974 1.80897 1.83959 1.38167 1.54392 1.30400 0.95642 0.92113 0.95782 0.92751 0.83808 0.89597 0.88615 0.77352 0.76736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.69 9.19 71.98 0.66 -5.03 16 2 C 0.22 10.11 2.60 44.17 0.11 10.22 16 3 H -0.01 -0.43 7.80 -2.39 -0.02 -0.45 16 4 C -0.54 -27.45 8.59 25.60 0.22 -27.23 16 5 H 0.06 3.06 7.62 -2.91 -0.02 3.04 16 6 C 0.02 0.90 5.30 84.65 0.45 1.35 16 7 N -0.92 -49.89 11.32 21.45 0.24 -49.65 16 8 Si 0.96 41.29 29.54 68.60 2.03 43.32 16 9 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 11 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 12 N -0.69 -25.78 6.29 -499.44 -3.14 -28.92 16 13 C 0.12 3.60 6.01 85.56 0.51 4.12 16 14 C 0.09 2.21 6.83 24.84 0.17 2.38 16 15 C -0.20 -3.69 10.81 22.19 0.24 -3.45 16 16 C -0.04 -0.76 10.57 22.19 0.23 -0.53 16 17 C -0.03 -0.89 8.24 81.07 0.67 -0.23 16 18 N 0.07 2.11 4.46 -154.75 -0.69 1.42 16 19 O -0.11 -2.78 19.01 18.88 0.36 -2.43 16 20 O -0.20 -6.93 19.26 21.67 0.42 -6.51 16 21 O -0.17 -5.36 10.65 2.09 0.02 -5.33 16 22 H 0.02 1.05 7.45 -2.38 -0.02 1.04 16 23 H 0.06 3.17 6.07 -2.39 -0.01 3.15 16 24 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.26 13.66 8.31 -92.71 -0.77 12.89 16 26 H 0.34 12.05 8.22 -89.69 -0.74 11.32 16 27 H 0.09 2.62 7.44 -2.39 -0.02 2.60 16 28 H 0.10 2.36 8.06 -2.39 -0.02 2.34 16 29 H 0.21 2.34 8.06 -2.91 -0.02 2.32 16 30 H 0.22 2.21 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -60.85 275.20 2.94 -57.90 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: 0.44 Total: 8.58 kcal Atomic # 6 Polarization: -21.66 SS G_CDS: 3.27 Total: -18.39 kcal Atomic # 7 Polarization: -73.55 SS G_CDS: -3.59 Total: -77.14 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: 0.80 Total: -14.27 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Total: -60.85 2.94 -57.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308924289.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.694 kcal (2) G-P(sol) polarization free energy of solvation -60.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds