Wall clock time and date at job start Mon Mar 30 2020 03:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86805 * 120.00273 * 2 1 4 4 H 1.48498 * 109.47200 * 239.99949 * 3 2 1 5 5 H 1.48498 * 109.46669 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47156 * 119.99964 * 3 2 1 7 7 C 1.38955 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99918 * 179.97438 * 7 2 1 9 9 N 1.37096 * 119.99464 * 0.02562 * 7 2 1 10 10 C 1.34784 * 119.99735 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99813 * 359.72559 * 10 9 7 12 12 C 1.50694 * 119.99988 * 179.72439 * 10 9 7 13 13 N 1.46497 * 109.47115 * 180.02562 * 12 10 9 14 14 C 1.34606 * 125.74777 * 124.99922 * 13 12 10 15 15 N 1.30850 * 107.63544 * 179.97438 * 14 13 12 16 16 C 1.34577 * 107.27339 * 0.02562 * 15 14 13 17 17 C 1.47755 * 126.05470 * 179.97438 * 16 15 14 18 18 O 1.21471 * 119.99875 * 179.97438 * 17 16 15 19 19 O 1.34718 * 119.99968 * 359.97108 * 17 16 15 20 20 N 1.28854 * 125.74478 * 304.69244 * 13 12 10 21 21 H 0.97000 * 119.99610 * 359.97438 * 1 2 3 22 22 H 0.97000 * 120.00868 * 359.72070 * 9 7 2 23 23 H 1.08998 * 109.47224 * 299.99701 * 12 10 9 24 24 H 1.09002 * 109.47054 * 60.00213 * 12 10 9 25 25 H 1.07993 * 126.18388 * 359.96481 * 14 13 12 26 26 H 0.96698 * 117.00127 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5579 -0.0045 12 6 1.2436 -4.8629 0.0068 13 7 2.1956 -5.9764 0.0061 14 6 2.2337 -6.9790 0.9035 15 7 3.2176 -7.7739 0.5684 16 6 3.7874 -7.2601 -0.5373 17 6 4.9392 -7.8296 -1.2667 18 8 5.3663 -7.2721 -2.2578 19 8 5.5158 -8.9671 -0.8326 20 7 3.1339 -6.1641 -0.8568 21 1 -0.4849 0.8401 0.0004 22 1 0.3533 -2.3907 0.0043 23 1 0.6207 -4.9185 0.8995 24 1 0.6133 -4.9228 -0.8804 25 1 1.5720 -7.1045 1.7477 26 1 6.2662 -9.3015 -1.3427 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309057063.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:59 Heat of formation + Delta-G solvation = -25.002387 kcal Electronic energy + Delta-G solvation = -16301.479804 eV Core-core repulsion = 13189.967828 eV Total energy + Delta-G solvation = -3111.511975 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.069 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.32193 -39.85554 -38.41161 -36.06919 -34.54479 -33.84790 -31.75820 -31.40061 -28.61791 -25.48491 -24.34519 -22.45230 -21.04126 -19.72940 -18.38985 -18.04972 -17.48042 -16.95187 -16.01309 -15.84269 -15.15559 -14.96836 -14.56700 -14.31462 -13.88337 -13.30677 -12.70901 -12.36766 -11.78188 -11.65052 -11.56617 -11.15631 -10.84044 -10.55911 -10.40909 -10.33325 -10.28214 -9.70462 -9.60153 -8.65966 -8.20013 -6.61090 -4.02764 1.38017 2.04106 2.19091 2.94430 3.07999 3.17637 3.22428 3.29152 3.54948 4.00402 4.26277 4.49799 4.68112 4.95588 5.10912 5.22263 5.42498 5.85063 6.03819 6.32750 6.43705 6.59718 7.38353 7.79985 7.81545 8.21639 8.34054 8.96053 9.24508 9.73763 10.55521 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.043991 B = 0.005116 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.346289 B = 5471.468251 C = 5917.447571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.028 3.972 3 Si 0.934 3.066 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.304 4.304 8 H 0.105 0.895 9 N -0.547 5.547 10 C 0.419 3.581 11 O -0.568 6.568 12 C 0.103 3.897 13 N -0.267 5.267 14 C 0.186 3.814 15 N -0.470 5.470 16 C 0.130 3.870 17 C 0.593 3.407 18 O -0.491 6.491 19 O -0.495 6.495 20 N -0.195 5.195 21 H 0.276 0.724 22 H 0.395 0.605 23 H 0.128 0.872 24 H 0.117 0.883 25 H 0.228 0.772 26 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.768 -12.269 1.719 12.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.175 4.175 3 Si 0.760 3.240 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.433 4.433 8 H 0.123 0.877 9 N -0.183 5.183 10 C 0.202 3.798 11 O -0.451 6.451 12 C -0.022 4.022 13 N -0.064 5.064 14 C -0.109 4.109 15 N -0.195 5.195 16 C -0.146 4.146 17 C 0.432 3.568 18 O -0.375 6.375 19 O -0.305 6.305 20 N -0.038 5.038 21 H 0.085 0.915 22 H 0.228 0.772 23 H 0.146 0.854 24 H 0.135 0.865 25 H 0.245 0.755 26 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 0.006 -11.727 1.254 11.793 hybrid contribution -0.083 0.813 -0.026 0.817 sum -0.077 -10.914 1.227 10.983 Atomic orbital electron populations 1.69584 1.05997 1.28779 1.49204 1.25306 0.95690 0.99928 0.96565 0.85859 0.78818 0.79957 0.79329 1.19650 1.20770 1.19718 1.19685 0.93500 0.81761 1.48341 0.87691 1.41725 1.09268 1.04210 1.63117 1.19463 0.88599 0.84399 0.87313 1.90663 1.13073 1.86152 1.55225 1.21986 0.89233 0.84518 1.06447 1.47025 1.22042 1.19413 1.17871 1.26528 0.99525 0.86583 0.98249 1.71282 1.07825 1.28274 1.12159 1.22008 1.01144 0.94416 0.96996 1.18393 0.79847 0.78036 0.80548 1.90959 1.61584 1.60074 1.24868 1.84589 1.48595 1.39281 1.58050 1.74480 0.99627 1.14613 1.15052 0.91455 0.77151 0.85407 0.86500 0.75539 0.72491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.82 13.05 55.50 0.72 -22.10 15 2 C 0.03 0.71 5.50 -17.47 -0.10 0.62 15 3 Si 0.93 20.26 29.55 -169.99 -5.02 15.24 15 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 15 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 15 6 H -0.27 -5.88 7.11 56.52 0.40 -5.48 15 7 C -0.30 -8.04 9.68 -14.93 -0.14 -8.18 15 8 H 0.11 2.97 7.16 -52.49 -0.38 2.59 15 9 N -0.55 -12.65 5.29 -10.96 -0.06 -12.70 15 10 C 0.42 9.11 7.79 -10.98 -0.09 9.02 15 11 O -0.57 -15.22 15.26 5.54 0.08 -15.14 15 12 C 0.10 1.50 6.93 -5.20 -0.04 1.46 15 13 N -0.27 -4.39 3.17 -63.77 -0.20 -4.59 15 14 C 0.19 2.51 12.57 -90.48 -1.14 1.37 15 15 N -0.47 -7.69 11.42 -12.38 -0.14 -7.83 15 16 C 0.13 2.39 7.99 -156.34 -1.25 1.14 15 17 C 0.59 9.93 8.35 34.62 0.29 10.22 15 18 O -0.49 -9.45 17.87 -19.24 -0.34 -9.79 15 19 O -0.50 -6.06 13.44 -40.54 -0.54 -6.61 15 20 N -0.19 -3.91 11.06 32.06 0.35 -3.56 15 21 H 0.28 6.68 8.31 -40.82 -0.34 6.34 15 22 H 0.39 8.36 7.90 -40.82 -0.32 8.03 15 23 H 0.13 1.23 8.06 -51.93 -0.42 0.81 15 24 H 0.12 1.43 8.14 -51.93 -0.42 1.00 15 25 H 0.23 1.71 8.06 -52.49 -0.42 1.28 15 26 H 0.42 2.64 9.11 45.56 0.42 3.05 15 LS Contribution 256.98 15.07 3.87 3.87 Total: -1.00 -36.58 256.98 -4.42 -41.00 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -0.68 Total: 6.55 kcal Atomic # 6 Polarization: 18.11 SS G_CDS: -2.46 Total: 15.66 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: 0.68 Total: -50.78 kcal Atomic # 8 Polarization: -30.73 SS G_CDS: -0.80 Total: -31.54 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -36.58 -4.42 -41.00 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309057063.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.000 kcal (2) G-P(sol) polarization free energy of solvation -36.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds