Wall clock time and date at job start Mon Mar 30 2020 03:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86805 * 120.00273 * 2 1 4 4 H 1.48498 * 109.47200 * 239.99949 * 3 2 1 5 5 H 1.48498 * 109.46669 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47156 * 119.99964 * 3 2 1 7 7 C 1.38955 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99918 * 179.97438 * 7 2 1 9 9 N 1.37096 * 119.99464 * 0.02562 * 7 2 1 10 10 C 1.34784 * 119.99735 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99813 * 359.72559 * 10 9 7 12 12 C 1.50694 * 119.99988 * 179.72439 * 10 9 7 13 13 N 1.46497 * 109.47115 * 180.02562 * 12 10 9 14 14 C 1.34606 * 125.74777 * 124.99922 * 13 12 10 15 15 N 1.30850 * 107.63544 * 179.97438 * 14 13 12 16 16 C 1.34577 * 107.27339 * 0.02562 * 15 14 13 17 17 C 1.47755 * 126.05470 * 179.97438 * 16 15 14 18 18 O 1.21471 * 119.99875 * 179.97438 * 17 16 15 19 19 O 1.34718 * 119.99968 * 359.97108 * 17 16 15 20 20 N 1.28854 * 125.74478 * 304.69244 * 13 12 10 21 21 H 0.97000 * 119.99610 * 359.97438 * 1 2 3 22 22 H 0.97000 * 120.00868 * 359.72070 * 9 7 2 23 23 H 1.08998 * 109.47224 * 299.99701 * 12 10 9 24 24 H 1.09002 * 109.47054 * 60.00213 * 12 10 9 25 25 H 1.07993 * 126.18388 * 359.96481 * 14 13 12 26 26 H 0.96698 * 117.00127 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5579 -0.0045 12 6 1.2436 -4.8629 0.0068 13 7 2.1956 -5.9764 0.0061 14 6 2.2337 -6.9790 0.9035 15 7 3.2176 -7.7739 0.5684 16 6 3.7874 -7.2601 -0.5373 17 6 4.9392 -7.8296 -1.2667 18 8 5.3663 -7.2721 -2.2578 19 8 5.5158 -8.9671 -0.8326 20 7 3.1339 -6.1641 -0.8568 21 1 -0.4849 0.8401 0.0004 22 1 0.3533 -2.3907 0.0043 23 1 0.6207 -4.9185 0.8995 24 1 0.6133 -4.9228 -0.8804 25 1 1.5720 -7.1045 1.7477 26 1 6.2662 -9.3015 -1.3427 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309057063.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:55 Heat of formation + Delta-G solvation = -54.434107 kcal Electronic energy + Delta-G solvation = -16302.756059 eV Core-core repulsion = 13189.967828 eV Total energy + Delta-G solvation = -3112.788231 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.069 amu Computer time = 5.13 seconds Orbital eigenvalues (eV) -44.53646 -41.09241 -40.15998 -37.24631 -36.22641 -35.34319 -33.42879 -32.86604 -29.96385 -27.13172 -25.81998 -23.63312 -22.32813 -21.31950 -20.12204 -19.36012 -18.69688 -18.38742 -17.38126 -17.29732 -16.63576 -16.25993 -16.02983 -15.80834 -15.59984 -14.48916 -14.37598 -13.73163 -13.56914 -13.03988 -12.86840 -12.73812 -12.49784 -12.16128 -12.15229 -11.61606 -11.56665 -11.53412 -10.96120 -10.36601 -10.09914 -8.53624 -6.02155 0.07430 0.90918 1.08141 1.35254 1.41202 1.50415 1.83288 1.89755 2.02180 2.26682 2.92710 3.13182 3.23040 3.67802 4.01960 4.14963 4.25097 4.30759 4.78358 5.19064 5.34049 5.36345 5.55590 5.90218 6.49347 6.74609 7.01945 7.04896 7.41519 7.98311 8.62321 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.043991 B = 0.005116 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.346289 B = 5471.468251 C = 5917.447571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.002 4.002 3 Si 0.987 3.013 4 H -0.277 1.277 5 H -0.267 1.267 6 H -0.272 1.272 7 C -0.337 4.337 8 H 0.074 0.926 9 N -0.554 5.554 10 C 0.418 3.582 11 O -0.624 6.624 12 C 0.114 3.886 13 N -0.278 5.278 14 C 0.212 3.788 15 N -0.488 5.488 16 C 0.114 3.886 17 C 0.597 3.403 18 O -0.528 6.528 19 O -0.480 6.480 20 N -0.251 5.251 21 H 0.281 0.719 22 H 0.404 0.596 23 H 0.191 0.809 24 H 0.145 0.855 25 H 0.290 0.710 26 H 0.441 0.559 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.244 -13.144 2.904 13.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.203 4.203 3 Si 0.811 3.189 4 H -0.203 1.203 5 H -0.191 1.191 6 H -0.198 1.198 7 C -0.467 4.467 8 H 0.092 0.908 9 N -0.191 5.191 10 C 0.204 3.796 11 O -0.511 6.511 12 C -0.009 4.009 13 N -0.074 5.074 14 C -0.082 4.082 15 N -0.214 5.214 16 C -0.162 4.162 17 C 0.437 3.563 18 O -0.415 6.415 19 O -0.293 6.293 20 N -0.094 5.094 21 H 0.090 0.910 22 H 0.240 0.760 23 H 0.208 0.792 24 H 0.163 0.837 25 H 0.305 0.695 26 H 0.305 0.695 Dipole moment (debyes) X Y Z Total from point charges -1.494 -12.633 2.442 12.953 hybrid contribution 0.390 0.964 -0.340 1.095 sum -1.104 -11.668 2.102 11.907 Atomic orbital electron populations 1.69614 1.06488 1.29676 1.49070 1.25919 0.96527 1.02047 0.95833 0.85078 0.77943 0.77095 0.78804 1.20253 1.19086 1.19767 1.19535 0.92583 0.83918 1.50656 0.90824 1.41714 1.09602 1.04042 1.63772 1.20665 0.88337 0.86310 0.84301 1.90640 1.16054 1.87535 1.56829 1.22167 0.88110 0.79746 1.10910 1.47175 1.21860 1.20338 1.18065 1.27740 0.98406 0.84285 0.97783 1.71295 1.08965 1.29289 1.11807 1.22342 1.01628 0.94399 0.97836 1.18402 0.79538 0.78500 0.79832 1.90934 1.62705 1.61383 1.26437 1.84540 1.49428 1.37263 1.58022 1.74391 1.01572 1.16010 1.17475 0.90952 0.76026 0.79185 0.83697 0.69509 0.69539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.53 13.05 21.66 0.28 -45.25 15 2 C 0.00 -0.09 5.50 84.93 0.47 0.38 15 3 Si 0.99 41.44 29.55 68.60 2.03 43.47 15 4 H -0.28 -11.81 7.11 99.48 0.71 -11.10 15 5 H -0.27 -10.43 7.11 99.48 0.71 -9.73 15 6 H -0.27 -11.38 7.11 99.48 0.71 -10.68 15 7 C -0.34 -18.20 9.68 84.04 0.81 -17.39 15 8 H 0.07 4.37 7.16 -2.91 -0.02 4.35 15 9 N -0.55 -25.50 5.29 -306.97 -1.62 -27.12 15 10 C 0.42 17.93 7.79 87.65 0.68 18.61 15 11 O -0.62 -34.20 15.26 -3.08 -0.05 -34.24 15 12 C 0.11 2.94 6.93 85.63 0.59 3.53 15 13 N -0.28 -8.48 3.17 -355.67 -1.13 -9.61 15 14 C 0.21 4.92 12.57 180.30 2.27 7.18 15 15 N -0.49 -14.90 11.42 -193.09 -2.21 -17.11 15 16 C 0.11 4.14 7.99 137.07 1.10 5.23 15 17 C 0.60 20.02 8.35 70.34 0.59 20.61 15 18 O -0.53 -20.81 17.87 19.93 0.36 -20.46 15 19 O -0.48 -11.17 13.44 -56.28 -0.76 -11.93 15 20 N -0.25 -10.02 11.06 -52.49 -0.58 -10.60 15 21 H 0.28 13.25 8.31 -92.71 -0.77 12.47 15 22 H 0.40 16.68 7.90 -92.71 -0.73 15.94 15 23 H 0.19 2.53 8.06 -2.39 -0.02 2.51 15 24 H 0.15 3.01 8.14 -2.39 -0.02 2.99 15 25 H 0.29 2.46 8.06 -2.91 -0.02 2.44 15 26 H 0.44 4.91 9.11 -74.06 -0.67 4.23 15 Total: -1.00 -83.96 256.98 2.69 -81.26 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -0.14 Total: 13.43 kcal Atomic # 6 Polarization: 31.65 SS G_CDS: 6.51 Total: 38.16 kcal Atomic # 7 Polarization: -104.44 SS G_CDS: -5.25 Total: -109.69 kcal Atomic # 8 Polarization: -66.18 SS G_CDS: -0.45 Total: -66.62 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Total: -83.96 2.69 -81.26 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309057063.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.830 kcal (2) G-P(sol) polarization free energy of solvation -83.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.13 seconds