Wall clock time and date at job start Mon Mar 30 2020 04:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99813 * 2 1 4 4 H 1.48500 * 109.46930 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46867 * 300.00204 * 3 2 1 6 6 H 1.48495 * 109.46877 * 60.00084 * 3 2 1 7 7 C 1.37872 * 120.00033 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99924 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99986 * 359.97438 * 7 2 1 10 10 O 1.42907 * 109.46959 * 180.02562 * 9 7 2 11 11 C 1.42898 * 113.99889 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47353 * 179.97438 * 11 10 9 13 13 N 1.46498 * 109.47441 * 180.02562 * 12 11 10 14 14 C 1.35351 * 126.44292 * 265.02913 * 13 12 11 15 15 C 1.35623 * 107.16848 * 179.97438 * 14 13 12 16 16 N 1.33040 * 108.35812 * 0.23126 * 15 14 13 17 17 C 1.31671 * 109.09613 * 359.61582 * 16 15 14 18 18 C 1.47257 * 125.87270 * 180.15071 * 17 16 15 19 19 O 1.21527 * 119.99963 * 180.27405 * 18 17 16 20 20 O 1.34808 * 119.99815 * 0.27042 * 18 17 16 21 21 H 0.96998 * 120.00056 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.46992 * 60.00696 * 9 7 2 23 23 H 1.09004 * 109.47297 * 300.00380 * 9 7 2 24 24 H 1.09002 * 109.46809 * 59.99792 * 11 10 9 25 25 H 1.08994 * 109.47106 * 299.99990 * 11 10 9 26 26 H 1.09000 * 109.46834 * 59.99807 * 12 11 10 27 27 H 1.09002 * 109.47056 * 300.00485 * 12 11 10 28 28 H 1.08004 * 126.41068 * 359.94242 * 14 13 12 29 29 H 1.08002 * 125.81681 * 179.97438 * 15 14 13 30 30 H 0.96704 * 116.99594 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 8 2.1797 -3.5853 -0.0005 11 6 1.5652 -4.8754 0.0000 12 6 2.6481 -5.9562 -0.0006 13 7 2.0181 -7.2788 -0.0007 14 6 1.7580 -8.0455 1.0840 15 6 1.1718 -9.1843 0.6381 16 7 1.0806 -9.1172 -0.6875 17 6 1.5819 -7.9704 -1.0964 18 6 1.6638 -7.5137 -2.4939 19 8 2.1543 -6.4322 -2.7520 20 8 1.1946 -8.2953 -3.4870 21 1 -0.4850 0.8400 -0.0004 22 1 0.6242 -2.5567 -0.8903 23 1 0.6246 -2.5571 0.8897 24 1 0.9447 -4.9826 -0.8897 25 1 0.9454 -4.9822 0.8902 26 1 3.2689 -5.8490 0.8889 27 1 3.2677 -5.8492 -0.8911 28 1 1.9769 -7.7971 2.1120 29 1 0.8397 -10.0071 1.2537 30 1 1.2706 -7.9530 -4.3882 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315261501.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:52 Heat of formation + Delta-G solvation = -73.020721 kcal Electronic energy + Delta-G solvation = -16577.705984 eV Core-core repulsion = 13567.652121 eV Total energy + Delta-G solvation = -3010.053863 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.094 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.49699 -39.88176 -37.15017 -36.26128 -34.41004 -32.74661 -30.34447 -29.27398 -26.96795 -24.73846 -23.08538 -22.35410 -21.76879 -20.32146 -18.12235 -17.63953 -16.65806 -16.27969 -16.01283 -15.42289 -15.29330 -14.95006 -14.38084 -14.30303 -13.59752 -13.42466 -13.30401 -12.82977 -12.19149 -11.73334 -11.31350 -11.03951 -10.94329 -10.89917 -10.79062 -10.34449 -10.23607 -9.86041 -9.20649 -8.98606 -8.81087 -8.31526 -6.17943 -4.20566 1.00322 2.03605 2.32279 3.03119 3.13168 3.25331 3.31885 3.38241 4.25554 4.35001 4.66397 4.70642 4.89296 5.17904 5.18823 5.26579 5.41817 5.51494 5.74731 5.94992 6.13389 6.24976 6.40477 6.68443 6.96351 7.30764 7.48886 7.70535 7.84034 8.03306 8.39206 8.91102 9.44444 10.93643 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.037786 B = 0.004750 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.847088 B = 5893.568464 C = 6282.421282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.910 3.090 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.517 4.517 8 H 0.068 0.932 9 C 0.197 3.803 10 O -0.389 6.389 11 C 0.059 3.941 12 C 0.096 3.904 13 N -0.401 5.401 14 C -0.008 4.008 15 C -0.033 4.033 16 N -0.419 5.419 17 C 0.141 3.859 18 C 0.575 3.425 19 O -0.497 6.497 20 O -0.491 6.491 21 H 0.265 0.735 22 H 0.008 0.992 23 H 0.007 0.993 24 H 0.046 0.954 25 H 0.043 0.957 26 H 0.106 0.894 27 H 0.116 0.884 28 H 0.190 0.810 29 H 0.182 0.818 30 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.857 -16.691 -0.134 16.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.737 3.263 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.555 4.555 8 H 0.087 0.913 9 C 0.123 3.877 10 O -0.309 6.309 11 C -0.020 4.020 12 C -0.026 4.026 13 N -0.083 5.083 14 C -0.148 4.148 15 C -0.187 4.187 16 N -0.141 5.141 17 C -0.114 4.114 18 C 0.416 3.584 19 O -0.383 6.383 20 O -0.301 6.301 21 H 0.074 0.926 22 H 0.026 0.974 23 H 0.025 0.975 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.125 0.875 27 H 0.134 0.866 28 H 0.207 0.793 29 H 0.199 0.801 30 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 2.770 -16.752 -0.450 16.986 hybrid contribution 0.314 1.698 0.080 1.729 sum 3.084 -15.054 -0.370 15.371 Atomic orbital electron populations 1.69972 1.06157 1.27237 1.50285 1.24960 0.95001 0.99528 0.94967 0.86244 0.79989 0.82362 0.77693 1.19413 1.20746 1.20768 1.21059 0.94155 0.89093 1.51200 0.91333 1.20281 0.88657 0.83055 0.95669 1.87803 1.35592 1.12179 1.95289 1.22302 0.93708 0.85793 1.00200 1.22103 0.96275 0.77400 1.06775 1.45166 1.41622 1.15647 1.05895 1.23140 1.04774 0.93625 0.93241 1.22545 1.05942 0.99339 0.90894 1.70307 1.15580 1.15735 1.12469 1.20987 1.10396 0.92050 0.87955 1.18664 0.74675 0.81220 0.83803 1.91047 1.41917 1.21355 1.83985 1.84590 1.76130 1.49834 1.19535 0.92576 0.97412 0.97498 0.93620 0.93923 0.87547 0.86594 0.79307 0.80062 0.72152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 7 C -0.52 -15.16 9.43 -34.44 -0.32 -15.49 16 8 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 9 C 0.20 5.43 5.69 36.01 0.20 5.63 16 10 O -0.39 -9.30 10.33 -35.23 -0.36 -9.66 16 11 C 0.06 1.10 6.26 37.16 0.23 1.33 16 12 C 0.10 1.40 5.83 -4.04 -0.02 1.38 16 13 N -0.40 -5.44 2.76 -114.61 -0.32 -5.76 16 14 C -0.01 -0.09 11.53 -16.93 -0.20 -0.28 16 15 C -0.03 -0.36 11.85 -17.96 -0.21 -0.58 16 16 N -0.42 -6.01 11.25 -11.28 -0.13 -6.13 16 17 C 0.14 2.09 7.81 -154.50 -1.21 0.88 16 18 C 0.58 8.31 8.33 34.40 0.29 8.60 16 19 O -0.50 -8.35 15.30 -19.28 -0.30 -8.65 16 20 O -0.49 -5.50 13.43 -40.79 -0.55 -6.05 16 21 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 22 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 23 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 24 H 0.05 0.91 7.85 -51.93 -0.41 0.50 16 25 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.11 1.31 8.13 -51.93 -0.42 0.89 16 27 H 0.12 1.82 6.64 -51.93 -0.34 1.48 16 28 H 0.19 1.30 8.06 -52.48 -0.42 0.87 16 29 H 0.18 1.36 8.06 -52.49 -0.42 0.94 16 30 H 0.42 2.46 9.11 45.56 0.42 2.88 16 LS Contribution 277.79 15.07 4.19 4.19 Total: -1.00 -35.11 277.79 -5.50 -40.61 By element: Atomic # 1 Polarization: 0.25 SS G_CDS: -2.42 Total: -2.17 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -1.34 Total: 3.02 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.29 Total: -37.95 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -1.21 Total: -24.35 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -35.11 -5.50 -40.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315261501.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.409 kcal (2) G-P(sol) polarization free energy of solvation -35.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds