Wall clock time and date at job start Mon Mar 30 2020 03:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00281 * 2 1 4 4 H 1.48500 * 109.47339 * 270.00585 * 3 2 1 5 5 H 1.48500 * 109.46817 * 30.00715 * 3 2 1 6 6 H 1.48497 * 109.47061 * 150.00425 * 3 2 1 7 7 C 1.37874 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00394 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00198 * 359.97438 * 7 2 1 10 10 O 1.42902 * 109.47481 * 180.02562 * 9 7 2 11 11 C 1.42895 * 113.99787 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47020 * 180.02562 * 11 10 9 13 13 S 1.81402 * 109.47350 * 180.02562 * 12 11 10 14 14 C 1.76196 * 103.00121 * 179.97438 * 13 12 11 15 15 C 1.39548 * 120.16296 * 180.30237 * 14 13 12 16 16 C 1.38533 * 117.90046 * 180.24074 * 15 14 13 17 17 C 1.38850 * 118.04501 * 359.46325 * 16 15 14 18 18 N 1.31792 * 120.02857 * 0.27998 * 17 16 15 19 19 N 1.28357 * 122.28875 * 359.97438 * 18 17 16 20 20 H 0.97001 * 120.00000 * 359.97438 * 1 2 3 21 21 H 1.08996 * 109.47160 * 60.00036 * 9 7 2 22 22 H 1.09000 * 109.46672 * 300.00594 * 9 7 2 23 23 H 1.09003 * 109.47567 * 60.00026 * 11 10 9 24 24 H 1.08999 * 109.47433 * 300.00425 * 11 10 9 25 25 H 1.09001 * 109.47406 * 59.99953 * 12 11 10 26 26 H 1.09007 * 109.47121 * 300.00129 * 12 11 10 27 27 H 1.07996 * 121.05069 * 359.97438 * 15 14 13 28 28 H 1.08002 * 120.97945 * 179.74468 * 16 15 14 29 29 H 1.07998 * 119.98416 * 180.29794 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5854 -0.0005 11 6 1.5650 -4.8754 0.0000 12 6 2.6479 -5.9562 0.0006 13 16 1.8677 -7.5939 0.0006 14 6 3.2472 -8.6901 0.0006 15 6 3.0455 -10.0709 -0.0058 16 6 4.1632 -10.8893 -0.0005 17 6 5.4139 -10.2863 -0.0005 18 7 5.5124 -8.9720 0.0000 19 7 4.4816 -8.2072 0.0000 20 1 -0.4850 0.8401 0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6246 -2.5570 0.8896 23 1 0.9445 -4.9827 -0.8897 24 1 0.9450 -4.9821 0.8902 25 1 3.2680 -5.8488 0.8906 26 1 3.2681 -5.8496 -0.8894 27 1 2.0495 -10.4884 -0.0104 28 1 4.0647 -11.9648 -0.0009 29 1 6.3064 -10.8944 -0.0013 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338561648.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:42 Heat of formation + Delta-G solvation = 2.249261 kcal Electronic energy + Delta-G solvation = -13682.654001 eV Core-core repulsion = 11118.616961 eV Total energy + Delta-G solvation = -2564.037041 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.02558 -36.90168 -33.49386 -32.88202 -32.76685 -30.95276 -27.05167 -25.04360 -24.87834 -22.62480 -22.19015 -18.37263 -17.55385 -16.96568 -16.39806 -15.94091 -15.58751 -15.13092 -14.72646 -14.42186 -13.67773 -13.54859 -13.13163 -13.09368 -12.01559 -11.49495 -11.33330 -10.92830 -10.89896 -10.82102 -10.71600 -10.57292 -10.53444 -10.08459 -9.91896 -9.14657 -8.89619 -8.24031 -7.89626 -6.12679 -4.14720 0.50047 0.53213 1.12136 2.06304 3.22724 3.30802 3.35651 3.41526 4.03112 4.27710 4.34688 4.37406 4.45898 4.73911 4.84185 5.18294 5.23945 5.33860 5.54199 5.59725 5.75213 5.79614 6.06237 6.16428 7.03782 7.37555 7.77048 8.10460 8.38450 8.48890 8.97553 9.50081 10.98761 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.059789 B = 0.003704 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.202230 B = 7558.205651 C = 8000.658656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.910 3.090 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.516 4.516 8 H 0.068 0.932 9 C 0.195 3.805 10 O -0.389 6.389 11 C 0.078 3.922 12 C -0.097 4.097 13 S -0.037 6.037 14 C 0.060 3.940 15 C -0.102 4.102 16 C -0.103 4.103 17 C 0.026 3.974 18 N -0.229 5.229 19 N -0.248 5.248 20 H 0.264 0.736 21 H 0.008 0.992 22 H 0.008 0.992 23 H 0.048 0.952 24 H 0.047 0.953 25 H 0.102 0.898 26 H 0.101 0.899 27 H 0.154 0.846 28 H 0.154 0.846 29 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.405 -22.667 -0.003 23.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.737 3.263 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.555 4.555 8 H 0.086 0.914 9 C 0.121 3.879 10 O -0.310 6.310 11 C -0.001 4.001 12 C -0.246 4.246 13 S 0.201 5.799 14 C -0.195 4.195 15 C -0.137 4.137 16 C -0.133 4.133 17 C -0.143 4.143 18 N -0.071 5.071 19 N -0.095 5.095 20 H 0.074 0.926 21 H 0.026 0.974 22 H 0.026 0.974 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.120 0.880 26 H 0.120 0.880 27 H 0.172 0.828 28 H 0.172 0.828 29 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 4.241 -21.300 0.002 21.718 hybrid contribution 0.461 -0.272 -0.011 0.536 sum 4.703 -21.572 -0.009 22.079 Atomic orbital electron populations 1.69961 1.06106 1.27245 1.50398 1.24954 0.95012 0.99479 0.95052 0.86305 0.79665 0.82084 0.78272 1.20417 1.21041 1.19576 1.21049 0.94159 0.89191 1.51054 0.91413 1.20274 0.88736 0.83200 0.95685 1.87875 1.35550 1.12265 1.95276 1.21804 0.92867 0.85041 1.00367 1.23517 1.01920 0.91046 1.08104 1.85423 1.05052 0.99666 1.89766 1.24920 0.99108 0.96694 0.98800 1.21980 1.01325 0.91910 0.98440 1.22337 0.92758 1.02005 0.96208 1.24279 0.98692 0.93615 0.97704 1.72852 1.22658 1.04377 1.07178 1.73681 0.94817 1.29587 1.11404 0.92597 0.97410 0.97405 0.93430 0.93434 0.87986 0.87995 0.82788 0.82785 0.80972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.90 13.29 55.43 0.74 -26.17 15 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 3 Si 0.91 21.98 29.54 -169.99 -5.02 16.96 15 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 5 H -0.28 -6.72 7.11 56.52 0.40 -6.31 15 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 15 7 C -0.52 -15.34 9.43 -34.44 -0.32 -15.66 15 8 H 0.07 2.00 7.81 -52.48 -0.41 1.59 15 9 C 0.20 5.39 5.69 36.01 0.20 5.60 15 10 O -0.39 -9.53 10.33 -35.23 -0.36 -9.89 15 11 C 0.08 1.47 5.95 37.16 0.22 1.69 15 12 C -0.10 -1.56 5.60 37.16 0.21 -1.36 15 13 S -0.04 -0.48 21.93 -107.50 -2.36 -2.84 15 14 C 0.06 0.76 7.08 -16.75 -0.12 0.64 15 15 C -0.10 -0.91 9.97 -38.98 -0.39 -1.30 15 16 C -0.10 -0.71 10.20 -39.25 -0.40 -1.11 15 17 C 0.03 0.23 11.31 -17.34 -0.20 0.03 15 18 N -0.23 -3.10 11.49 30.58 0.35 -2.74 15 19 N -0.25 -3.71 10.61 31.49 0.33 -3.38 15 20 H 0.26 7.40 8.31 -40.82 -0.34 7.06 15 21 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 15 22 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 15 23 H 0.05 0.85 8.14 -51.93 -0.42 0.43 15 24 H 0.05 0.85 8.14 -51.93 -0.42 0.43 15 25 H 0.10 1.69 8.14 -51.92 -0.42 1.27 15 26 H 0.10 1.69 8.14 -51.92 -0.42 1.27 15 27 H 0.15 0.95 8.06 -52.49 -0.42 0.52 15 28 H 0.15 0.44 8.06 -52.49 -0.42 0.02 15 29 H 0.17 0.87 8.06 -52.49 -0.42 0.45 15 LS Contribution 278.34 15.07 4.19 4.19 Total: -1.00 -33.34 278.34 -6.37 -39.70 By element: Atomic # 1 Polarization: -2.56 SS G_CDS: -3.35 Total: -5.91 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: -0.89 Total: -9.93 kcal Atomic # 7 Polarization: -33.71 SS G_CDS: 1.42 Total: -32.29 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: -0.36 Total: -9.89 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 16 Polarization: -0.48 SS G_CDS: -2.36 Total: -2.84 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -33.34 -6.37 -39.70 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338561648.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.953 kcal (2) G-P(sol) polarization free energy of solvation -33.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds