Wall clock time and date at job start Mon Mar 30 2020 03:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00281 * 2 1 4 4 H 1.48500 * 109.47339 * 270.00585 * 3 2 1 5 5 H 1.48500 * 109.46817 * 30.00715 * 3 2 1 6 6 H 1.48497 * 109.47061 * 150.00425 * 3 2 1 7 7 C 1.37874 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00394 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00198 * 359.97438 * 7 2 1 10 10 O 1.42902 * 109.47481 * 180.02562 * 9 7 2 11 11 C 1.42895 * 113.99787 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47020 * 180.02562 * 11 10 9 13 13 S 1.81402 * 109.47350 * 180.02562 * 12 11 10 14 14 C 1.76196 * 103.00121 * 179.97438 * 13 12 11 15 15 C 1.39548 * 120.16296 * 180.30237 * 14 13 12 16 16 C 1.38533 * 117.90046 * 180.24074 * 15 14 13 17 17 C 1.38850 * 118.04501 * 359.46325 * 16 15 14 18 18 N 1.31792 * 120.02857 * 0.27998 * 17 16 15 19 19 N 1.28357 * 122.28875 * 359.97438 * 18 17 16 20 20 H 0.97001 * 120.00000 * 359.97438 * 1 2 3 21 21 H 1.08996 * 109.47160 * 60.00036 * 9 7 2 22 22 H 1.09000 * 109.46672 * 300.00594 * 9 7 2 23 23 H 1.09003 * 109.47567 * 60.00026 * 11 10 9 24 24 H 1.08999 * 109.47433 * 300.00425 * 11 10 9 25 25 H 1.09001 * 109.47406 * 59.99953 * 12 11 10 26 26 H 1.09007 * 109.47121 * 300.00129 * 12 11 10 27 27 H 1.07996 * 121.05069 * 359.97438 * 15 14 13 28 28 H 1.08002 * 120.97945 * 179.74468 * 16 15 14 29 29 H 1.07998 * 119.98416 * 180.29794 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5854 -0.0005 11 6 1.5650 -4.8754 0.0000 12 6 2.6479 -5.9562 0.0006 13 16 1.8677 -7.5939 0.0006 14 6 3.2472 -8.6901 0.0006 15 6 3.0455 -10.0709 -0.0058 16 6 4.1632 -10.8893 -0.0005 17 6 5.4139 -10.2863 -0.0005 18 7 5.5124 -8.9720 0.0000 19 7 4.4816 -8.2072 0.0000 20 1 -0.4850 0.8401 0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6246 -2.5570 0.8896 23 1 0.9445 -4.9827 -0.8897 24 1 0.9450 -4.9821 0.8902 25 1 3.2680 -5.8488 0.8906 26 1 3.2681 -5.8496 -0.8894 27 1 2.0495 -10.4884 -0.0104 28 1 4.0647 -11.9648 -0.0009 29 1 6.3064 -10.8944 -0.0013 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338561648.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:42 Heat of formation + Delta-G solvation = -20.968926 kcal Electronic energy + Delta-G solvation = -13683.660818 eV Core-core repulsion = 11118.616961 eV Total energy + Delta-G solvation = -2565.043857 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.82579 -38.78859 -35.05262 -34.21752 -33.60366 -32.55019 -29.20107 -25.87496 -25.66794 -24.62654 -23.81600 -19.25340 -18.67920 -18.31484 -17.81343 -17.48518 -17.13660 -16.51410 -16.12612 -15.53484 -15.27299 -14.84306 -14.52053 -14.14713 -13.79398 -13.07456 -13.01533 -12.63320 -12.60969 -12.29740 -12.06018 -11.81167 -11.60703 -11.33160 -11.26538 -10.92971 -10.73929 -10.33901 -8.90325 -8.34683 -6.47475 -0.23586 -0.17958 0.10633 0.92552 1.39689 1.42496 1.54758 2.33935 2.45723 2.99097 3.16053 3.29955 3.56885 3.77188 3.79997 3.89108 3.95833 4.16067 4.28056 4.57949 4.67913 4.75527 4.85445 4.89249 5.12434 5.22135 5.51598 5.90797 6.43864 6.74360 7.23931 7.57161 8.77505 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.059789 B = 0.003704 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.202230 B = 7558.205651 C = 8000.658656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.008 3.992 3 Si 0.985 3.015 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.266 1.266 7 C -0.553 4.553 8 H 0.061 0.939 9 C 0.208 3.792 10 O -0.408 6.408 11 C 0.074 3.926 12 C -0.093 4.093 13 S -0.012 6.012 14 C 0.036 3.964 15 C -0.103 4.103 16 C -0.081 4.081 17 C 0.031 3.969 18 N -0.278 5.278 19 N -0.296 5.296 20 H 0.272 0.728 21 H -0.007 1.007 22 H -0.007 1.007 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.185 0.815 28 H 0.207 0.793 29 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.839 -24.587 -0.021 25.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.191 4.191 3 Si 0.808 3.192 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.191 1.191 7 C -0.591 4.591 8 H 0.079 0.921 9 C 0.133 3.867 10 O -0.328 6.328 11 C -0.005 4.005 12 C -0.242 4.242 13 S 0.225 5.775 14 C -0.220 4.220 15 C -0.136 4.136 16 C -0.111 4.111 17 C -0.138 4.138 18 N -0.118 5.118 19 N -0.141 5.141 20 H 0.081 0.919 21 H 0.011 0.989 22 H 0.010 0.990 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.109 0.891 26 H 0.109 0.891 27 H 0.202 0.798 28 H 0.224 0.776 29 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 4.691 -23.238 -0.018 23.706 hybrid contribution 0.352 0.055 -0.006 0.356 sum 5.043 -23.183 -0.024 23.725 Atomic orbital electron populations 1.70057 1.07666 1.28783 1.50152 1.25964 0.96034 1.03363 0.93773 0.85157 0.78301 0.76902 0.78886 1.19217 1.19657 1.19062 1.21379 0.94141 0.90809 1.52744 0.92100 1.19923 0.88569 0.84109 0.94104 1.87819 1.35737 1.13898 1.95343 1.22042 0.93988 0.83246 1.01186 1.23234 1.00976 0.92990 1.07018 1.85119 1.04860 0.96931 1.90595 1.25073 0.98330 0.98193 1.00406 1.22427 1.03649 0.90266 0.97283 1.22932 0.90955 1.04230 0.92980 1.25015 1.01274 0.92414 0.95115 1.72744 1.22702 1.06771 1.09609 1.73554 0.95861 1.31333 1.13390 0.91899 0.98946 0.98950 0.92502 0.92514 0.89121 0.89122 0.79813 0.77555 0.77237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.05 13.29 21.45 0.28 -55.77 15 2 C 0.01 0.44 5.46 84.65 0.46 0.90 15 3 Si 0.99 45.02 29.54 68.60 2.03 47.05 15 4 H -0.27 -11.69 7.11 99.48 0.71 -10.98 15 5 H -0.27 -11.78 7.11 99.48 0.71 -11.07 15 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 15 7 C -0.55 -33.71 9.43 25.60 0.24 -33.47 15 8 H 0.06 3.69 7.81 -2.91 -0.02 3.67 15 9 C 0.21 11.95 5.69 71.24 0.41 12.35 15 10 O -0.41 -20.79 10.33 -148.98 -1.54 -22.33 15 11 C 0.07 2.87 5.95 71.98 0.43 3.29 15 12 C -0.09 -3.13 5.60 71.98 0.40 -2.73 15 13 S -0.01 -0.32 21.93 -56.49 -1.24 -1.56 15 14 C 0.04 0.90 7.08 84.90 0.60 1.50 15 15 C -0.10 -1.52 9.97 22.66 0.23 -1.30 15 16 C -0.08 -0.78 10.20 22.49 0.23 -0.55 15 17 C 0.03 0.46 11.31 84.85 0.96 1.42 15 18 N -0.28 -7.40 11.49 -57.18 -0.66 -8.05 15 19 N -0.30 -9.00 10.61 -54.28 -0.58 -9.57 15 20 H 0.27 15.18 8.31 -92.71 -0.77 14.41 15 21 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 15 22 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 15 23 H 0.06 2.10 8.14 -2.39 -0.02 2.08 15 24 H 0.06 2.09 8.14 -2.39 -0.02 2.07 15 25 H 0.09 3.19 8.14 -2.39 -0.02 3.17 15 26 H 0.09 3.19 8.14 -2.39 -0.02 3.17 15 27 H 0.18 1.52 8.06 -2.91 -0.02 1.49 15 28 H 0.21 -0.19 8.06 -2.91 -0.02 -0.21 15 29 H 0.21 1.28 8.06 -2.91 -0.02 1.26 15 Total: -1.00 -75.22 278.34 3.40 -71.82 By element: Atomic # 1 Polarization: -4.15 SS G_CDS: 1.14 Total: -3.01 kcal Atomic # 6 Polarization: -22.54 SS G_CDS: 3.96 Total: -18.58 kcal Atomic # 7 Polarization: -72.44 SS G_CDS: -0.95 Total: -73.39 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -1.54 Total: -22.33 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Atomic # 16 Polarization: -0.32 SS G_CDS: -1.24 Total: -1.56 kcal Total: -75.22 3.40 -71.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338561648.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.855 kcal (2) G-P(sol) polarization free energy of solvation -75.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds