Wall clock time and date at job start Mon Mar 30 2020 03:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99746 * 2 1 4 4 H 1.48498 * 109.46995 * 239.99623 * 3 2 1 5 5 H 1.48496 * 109.46897 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46993 * 119.99716 * 3 2 1 7 7 C 1.37880 * 120.00317 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00061 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99604 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46791 * 179.97438 * 9 7 2 11 11 C 1.50709 * 109.47026 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99743 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99934 * 179.97438 * 11 10 9 14 14 C 1.46493 * 119.99897 * 180.02562 * 13 11 10 15 15 C 1.50706 * 109.47093 * 180.02562 * 14 13 11 16 16 C 1.33635 * 122.75319 * 94.73023 * 15 14 13 17 17 S 1.76192 * 107.92524 * 179.97438 * 16 15 14 18 18 C 1.70976 * 90.28427 * 0.27803 * 17 16 15 19 19 N 1.29027 * 110.16712 * 359.83656 * 18 17 16 20 20 H 0.96998 * 120.00465 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47358 * 59.99807 * 9 7 2 22 22 H 1.09002 * 109.47134 * 299.99471 * 9 7 2 23 23 H 1.09000 * 109.47279 * 59.99818 * 10 9 7 24 24 H 1.09002 * 109.46898 * 299.99675 * 10 9 7 25 25 H 0.97005 * 119.99842 * 359.97438 * 13 11 10 26 26 H 1.09000 * 109.47314 * 59.99911 * 14 13 11 27 27 H 1.09002 * 109.46979 * 299.99697 * 14 13 11 28 28 H 1.08001 * 126.03202 * 0.03585 * 16 15 14 29 29 H 1.08001 * 124.91761 * 179.84059 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4919 -4.9672 -0.0001 12 8 0.2791 -4.9672 0.0000 13 7 2.1658 -6.1344 -0.0007 14 6 1.4334 -7.4031 -0.0019 15 6 2.4128 -8.5485 -0.0018 16 6 2.8114 -9.1588 1.1182 17 16 3.9462 -10.4295 0.6690 18 6 3.7783 -10.0084 -0.9796 19 7 2.9512 -9.0261 -1.1058 20 1 -0.4851 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8896 22 1 0.6242 -2.5567 0.8904 23 1 2.8721 -3.6043 0.8905 24 1 2.8720 -3.6043 -0.8895 25 1 3.1359 -6.1343 -0.0012 26 1 0.8070 -7.4602 -0.8921 27 1 0.8065 -7.4615 0.8879 28 1 2.4931 -8.9166 2.1215 29 1 4.2902 -10.4943 -1.7970 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360153519.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:53 Heat of formation + Delta-G solvation = -2.284540 kcal Electronic energy + Delta-G solvation = -14005.173451 eV Core-core repulsion = 11440.939810 eV Total energy + Delta-G solvation = -2564.233641 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -40.26816 -38.87702 -34.52371 -33.41460 -31.34873 -30.60172 -27.32412 -25.59375 -24.52384 -21.54378 -20.07700 -19.55869 -18.42825 -16.85282 -16.20581 -15.71674 -15.51104 -14.96577 -14.50677 -14.29235 -13.67659 -13.47213 -13.17590 -12.88809 -12.15690 -12.00387 -11.59296 -11.13621 -10.88807 -10.60054 -9.98285 -9.92144 -9.81459 -9.65017 -9.46427 -9.11948 -8.90431 -8.79085 -8.29106 -5.93340 -3.97730 0.36840 1.04693 1.37915 2.36238 3.27793 3.36394 3.40829 3.42612 3.72305 3.93056 4.50019 4.69330 4.90886 5.00343 5.39714 5.41311 5.64394 5.74181 5.89000 6.26075 6.28123 6.67651 6.92309 7.40383 7.76890 7.89148 7.89661 8.10197 8.41491 8.79052 9.10650 9.65482 11.17535 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.061091 B = 0.003719 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.221362 B = 7528.035416 C = 7745.364831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.129 4.129 11 C 0.512 3.488 12 O -0.534 6.534 13 N -0.739 5.739 14 C 0.195 3.805 15 C 0.050 3.950 16 C -0.234 4.234 17 S 0.118 5.882 18 C 0.022 3.978 19 N -0.458 5.458 20 H 0.261 0.739 21 H 0.024 0.976 22 H 0.024 0.976 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.398 0.602 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.182 0.818 29 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.784 -22.072 1.718 24.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.566 4.566 8 H 0.073 0.927 9 C -0.001 4.001 10 C -0.169 4.169 11 C 0.300 3.700 12 O -0.409 6.409 13 N -0.393 5.393 14 C 0.069 3.931 15 C -0.082 4.082 16 C -0.374 4.374 17 S 0.370 5.630 18 C -0.277 4.277 19 N -0.171 5.171 20 H 0.071 0.929 21 H 0.042 0.958 22 H 0.042 0.958 23 H 0.098 0.902 24 H 0.098 0.902 25 H 0.231 0.769 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.199 0.801 29 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 9.184 -22.500 1.693 24.361 hybrid contribution 0.445 1.421 -0.053 1.490 sum 9.629 -21.079 1.640 23.232 Atomic orbital electron populations 1.69987 1.06039 1.26673 1.50131 1.25030 0.94837 0.99215 0.95336 0.86644 0.79531 0.83178 0.78518 1.20271 1.21288 1.20276 1.21190 0.92895 0.91037 1.51461 0.92663 1.18902 0.93175 0.89320 0.98658 1.21870 1.00728 0.91758 1.02526 1.21585 0.88648 0.85433 0.74316 1.90673 1.14415 1.87540 1.48276 1.46186 1.10109 1.04879 1.78155 1.19637 0.90945 0.79006 1.03527 1.20430 1.00866 1.00144 0.86783 1.27028 1.04512 1.01576 1.04326 1.84084 1.41066 1.33065 1.04745 1.28472 1.00840 0.98252 1.00135 1.66170 1.09163 1.10422 1.31362 0.92908 0.95775 0.95789 0.90235 0.90196 0.76865 0.89987 0.90013 0.80090 0.78236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.69 13.29 55.43 0.74 -26.96 15 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 15 3 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 15 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 15 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 7 C -0.53 -15.16 9.11 -34.44 -0.31 -15.48 15 8 H 0.06 1.49 7.74 -52.49 -0.41 1.09 15 9 C 0.04 1.01 4.26 -27.88 -0.12 0.89 15 10 C -0.13 -2.67 5.64 -27.88 -0.16 -2.83 15 11 C 0.51 10.10 7.83 -10.98 -0.09 10.01 15 12 O -0.53 -12.79 15.98 5.56 0.09 -12.70 15 13 N -0.74 -11.02 5.55 -61.47 -0.34 -11.36 15 14 C 0.20 2.62 6.11 -5.19 -0.03 2.59 15 15 C 0.05 0.56 6.11 -84.22 -0.51 0.05 15 16 C -0.23 -2.08 11.11 29.12 0.32 -1.75 15 17 S 0.12 0.81 23.22 -107.50 -2.50 -1.68 15 18 C 0.02 0.18 12.23 51.58 0.63 0.81 15 19 N -0.46 -5.30 10.53 -11.89 -0.13 -5.43 15 20 H 0.26 7.65 8.31 -40.82 -0.34 7.31 15 21 H 0.02 0.72 8.10 -51.93 -0.42 0.30 15 22 H 0.02 0.71 8.10 -51.93 -0.42 0.29 15 23 H 0.08 1.49 8.14 -51.93 -0.42 1.07 15 24 H 0.08 1.53 8.14 -51.93 -0.42 1.11 15 25 H 0.40 5.02 8.46 -40.82 -0.35 4.68 15 26 H 0.08 1.22 8.14 -51.93 -0.42 0.80 15 27 H 0.08 1.05 8.10 -51.93 -0.42 0.63 15 28 H 0.18 1.28 8.06 -52.49 -0.42 0.86 15 29 H 0.20 0.95 8.06 -52.49 -0.42 0.53 15 LS Contribution 276.65 15.07 4.17 4.17 Total: -1.00 -34.95 276.65 -6.62 -41.57 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -3.26 Total: -0.35 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -0.36 Total: -4.11 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: 0.27 Total: -43.75 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.09 Total: -12.70 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: 0.81 SS G_CDS: -2.50 Total: -1.68 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -34.95 -6.62 -41.57 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360153519.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.287 kcal (2) G-P(sol) polarization free energy of solvation -34.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds