Wall clock time and date at job start Mon Mar 30 2020 03:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99746 * 2 1 4 4 H 1.48498 * 109.46995 * 239.99623 * 3 2 1 5 5 H 1.48496 * 109.46897 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46993 * 119.99716 * 3 2 1 7 7 C 1.37880 * 120.00317 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00061 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99604 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46791 * 179.97438 * 9 7 2 11 11 C 1.50709 * 109.47026 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99743 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99934 * 179.97438 * 11 10 9 14 14 C 1.46493 * 119.99897 * 180.02562 * 13 11 10 15 15 C 1.50706 * 109.47093 * 180.02562 * 14 13 11 16 16 C 1.33635 * 122.75319 * 94.73023 * 15 14 13 17 17 S 1.76192 * 107.92524 * 179.97438 * 16 15 14 18 18 C 1.70976 * 90.28427 * 0.27803 * 17 16 15 19 19 N 1.29027 * 110.16712 * 359.83656 * 18 17 16 20 20 H 0.96998 * 120.00465 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47358 * 59.99807 * 9 7 2 22 22 H 1.09002 * 109.47134 * 299.99471 * 9 7 2 23 23 H 1.09000 * 109.47279 * 59.99818 * 10 9 7 24 24 H 1.09002 * 109.46898 * 299.99675 * 10 9 7 25 25 H 0.97005 * 119.99842 * 359.97438 * 13 11 10 26 26 H 1.09000 * 109.47314 * 59.99911 * 14 13 11 27 27 H 1.09002 * 109.46979 * 299.99697 * 14 13 11 28 28 H 1.08001 * 126.03202 * 0.03585 * 16 15 14 29 29 H 1.08001 * 124.91761 * 179.84059 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4919 -4.9672 -0.0001 12 8 0.2791 -4.9672 0.0000 13 7 2.1658 -6.1344 -0.0007 14 6 1.4334 -7.4031 -0.0019 15 6 2.4128 -8.5485 -0.0018 16 6 2.8114 -9.1588 1.1182 17 16 3.9462 -10.4295 0.6690 18 6 3.7783 -10.0084 -0.9796 19 7 2.9512 -9.0261 -1.1058 20 1 -0.4851 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8896 22 1 0.6242 -2.5567 0.8904 23 1 2.8721 -3.6043 0.8905 24 1 2.8720 -3.6043 -0.8895 25 1 3.1359 -6.1343 -0.0012 26 1 0.8070 -7.4602 -0.8921 27 1 0.8065 -7.4615 0.8879 28 1 2.4931 -8.9166 2.1215 29 1 4.2902 -10.4943 -1.7970 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360153519.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:53 Heat of formation + Delta-G solvation = -28.766165 kcal Electronic energy + Delta-G solvation = -14006.321780 eV Core-core repulsion = 11440.939810 eV Total energy + Delta-G solvation = -2565.381971 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.17695 -40.30342 -35.90632 -35.50067 -33.10625 -31.78442 -28.62997 -27.12835 -25.56417 -23.46754 -21.36061 -20.60921 -19.25713 -18.72679 -17.47477 -17.18221 -16.69600 -16.43045 -16.37068 -15.27060 -14.87768 -14.70334 -14.19406 -14.14458 -14.07408 -13.60358 -13.23563 -12.76913 -12.51943 -12.37663 -11.90880 -11.63846 -11.32173 -10.89487 -10.64136 -10.55548 -10.45719 -10.14693 -9.87620 -8.16991 -6.31248 -0.27735 0.44455 0.73911 1.42465 1.47352 1.53801 1.55559 1.69076 2.39822 2.53319 3.15585 3.18744 3.90967 4.08196 4.13890 4.41803 4.48423 4.54698 4.59541 4.71547 5.03456 5.07550 5.36383 5.50918 5.63943 5.86046 6.18323 6.53941 6.73737 6.86726 7.29388 7.38779 8.95399 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.061091 B = 0.003719 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.221362 B = 7528.035416 C = 7745.364831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.008 4.008 3 Si 0.975 3.025 4 H -0.263 1.263 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.545 4.545 8 H 0.076 0.924 9 C 0.042 3.958 10 C -0.118 4.118 11 C 0.514 3.486 12 O -0.586 6.586 13 N -0.714 5.714 14 C 0.197 3.803 15 C 0.028 3.972 16 C -0.237 4.237 17 S 0.186 5.814 18 C 0.016 3.984 19 N -0.500 5.500 20 H 0.263 0.737 21 H -0.018 1.018 22 H -0.015 1.015 23 H 0.107 0.893 24 H 0.102 0.898 25 H 0.413 0.587 26 H 0.061 0.939 27 H 0.085 0.915 28 H 0.197 0.803 29 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.849 -23.103 2.235 26.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.206 4.206 3 Si 0.799 3.201 4 H -0.188 1.188 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.582 4.582 8 H 0.094 0.906 9 C 0.004 3.996 10 C -0.158 4.158 11 C 0.303 3.697 12 O -0.466 6.466 13 N -0.367 5.367 14 C 0.071 3.929 15 C -0.104 4.104 16 C -0.378 4.378 17 S 0.440 5.560 18 C -0.282 4.282 19 N -0.214 5.214 20 H 0.071 0.929 21 H 0.000 1.000 22 H 0.003 0.997 23 H 0.125 0.875 24 H 0.120 0.880 25 H 0.249 0.751 26 H 0.079 0.921 27 H 0.103 0.897 28 H 0.214 0.786 29 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 12.321 -23.591 2.212 26.706 hybrid contribution -0.467 1.572 -0.192 1.651 sum 11.855 -22.019 2.020 25.089 Atomic orbital electron populations 1.70172 1.08294 1.27874 1.51360 1.26160 0.95763 1.03996 0.94636 0.85352 0.78027 0.77274 0.79443 1.18802 1.21282 1.18628 1.21686 0.93993 0.91622 1.50946 0.90621 1.18694 0.93707 0.92383 0.94800 1.21638 0.99347 0.89950 1.04843 1.21340 0.87815 0.86491 0.74088 1.90658 1.16535 1.88290 1.51121 1.45891 1.10794 1.04269 1.75755 1.19596 0.91547 0.79074 1.02710 1.20039 1.01955 1.00505 0.87886 1.27291 1.04321 1.01735 1.04408 1.83899 1.38718 1.30675 1.02745 1.28978 0.99778 0.97259 1.02148 1.66127 1.10884 1.12324 1.32107 0.92852 0.99998 0.99682 0.87525 0.88023 0.75099 0.92065 0.89665 0.78599 0.75441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.14 13.29 21.45 0.28 -59.85 15 2 C -0.01 -0.48 5.46 84.66 0.46 -0.02 15 3 Si 0.98 44.74 29.54 68.60 2.03 46.76 15 4 H -0.26 -11.43 7.11 99.48 0.71 -10.72 15 5 H -0.29 -13.05 7.11 99.48 0.71 -12.35 15 6 H -0.26 -11.29 7.11 99.48 0.71 -10.58 15 7 C -0.54 -31.46 9.11 25.60 0.23 -31.22 15 8 H 0.08 3.96 7.74 -2.91 -0.02 3.94 15 9 C 0.04 2.38 4.26 29.85 0.13 2.50 15 10 C -0.12 -4.87 5.64 29.85 0.17 -4.70 15 11 C 0.51 20.62 7.83 87.66 0.69 21.31 15 12 O -0.59 -29.50 15.98 -3.02 -0.05 -29.55 15 13 N -0.71 -20.95 5.55 -466.79 -2.59 -23.54 15 14 C 0.20 5.32 6.11 85.64 0.52 5.85 15 15 C 0.03 0.60 6.11 41.52 0.25 0.86 15 16 C -0.24 -3.66 11.11 66.77 0.74 -2.92 15 17 S 0.19 1.95 23.22 -56.49 -1.31 0.64 15 18 C 0.02 0.22 12.23 130.65 1.60 1.82 15 19 N -0.50 -10.92 10.53 -191.54 -2.02 -12.94 15 20 H 0.26 15.81 8.31 -92.71 -0.77 15.04 15 21 H -0.02 -1.19 8.10 -2.39 -0.02 -1.20 15 22 H -0.02 -0.97 8.10 -2.39 -0.02 -0.99 15 23 H 0.11 3.82 8.14 -2.39 -0.02 3.80 15 24 H 0.10 3.75 8.14 -2.39 -0.02 3.73 15 25 H 0.41 9.72 8.46 -92.70 -0.78 8.94 15 26 H 0.06 1.91 8.14 -2.39 -0.02 1.89 15 27 H 0.09 2.23 8.10 -2.39 -0.02 2.21 15 28 H 0.20 2.28 8.06 -2.91 -0.02 2.26 15 29 H 0.23 1.46 8.06 -2.91 -0.02 1.44 15 Total: -1.00 -79.12 276.65 1.52 -77.61 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: 0.38 Total: 7.40 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: 4.79 Total: -6.53 kcal Atomic # 7 Polarization: -92.01 SS G_CDS: -4.32 Total: -96.33 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: -0.05 Total: -29.55 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -1.31 Total: 0.64 kcal Total: -79.12 1.52 -77.61 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360153519.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.840 kcal (2) G-P(sol) polarization free energy of solvation -79.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds