Wall clock time and date at job start Mon Mar 30 2020 04:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.39771 * 111.00083 * 2 1 4 4 C 1.40035 * 119.99895 * 59.99759 * 3 2 1 5 5 F 1.35101 * 119.78020 * 0.02562 * 4 3 2 6 6 C 1.39056 * 120.44225 * 180.02562 * 4 3 2 7 7 C 1.36305 * 120.46035 * 0.02562 * 6 4 3 8 8 C 1.41482 * 119.98794 * 359.97438 * 7 6 4 9 9 C 1.40027 * 120.22002 * 179.97438 * 8 7 6 10 10 H 1.08000 * 119.99448 * 154.11185 * 9 8 7 11 11 C 1.46547 * 120.00258 * 334.39039 * 9 8 7 12 12 N 1.29496 * 120.00257 * 161.20064 * 11 9 8 13 13 Si 1.86804 * 119.99996 * 341.20055 * 11 9 8 14 14 H 1.48498 * 109.47130 * 94.25570 * 13 11 9 15 15 H 1.48500 * 109.47361 * 214.25947 * 13 11 9 16 16 H 1.48502 * 109.46801 * 334.25990 * 13 11 9 17 17 C 1.37790 * 120.00072 * 240.23955 * 3 2 1 18 18 N 1.48020 * 120.22398 * 0.02562 * 17 3 2 19 19 O 1.31693 * 119.99961 * 270.18085 * 18 17 3 20 20 O 1.31707 * 119.99940 * 90.19412 * 18 17 3 21 21 H 1.09006 * 109.47063 * 300.00157 * 1 2 3 22 22 H 1.08999 * 109.47604 * 59.99750 * 1 2 3 23 23 H 1.09003 * 109.47388 * 180.02562 * 1 2 3 24 24 H 1.00902 * 111.00517 * 123.94711 * 2 1 3 25 25 H 1.08003 * 119.76742 * 179.97438 * 6 4 3 26 26 H 1.08004 * 120.00779 * 179.97438 * 7 6 4 27 27 H 0.96995 * 120.00371 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9698 1.3049 0.0000 4 6 1.6546 2.1758 1.0502 5 9 0.8664 1.7500 2.0615 6 6 2.1475 3.4761 1.0593 7 6 2.9435 3.9204 0.0459 8 6 3.2739 3.0563 -1.0246 9 6 4.0908 3.5079 -2.0684 10 1 4.6777 2.8028 -2.6383 11 6 4.1540 4.9377 -2.3834 12 7 5.1453 5.4056 -3.0729 13 14 2.8047 6.0853 -1.7904 14 1 3.2080 6.6979 -0.4991 15 1 2.5852 7.1538 -2.7980 16 1 1.5482 5.3165 -1.6024 17 6 2.7697 1.7358 -1.0359 18 7 3.1012 0.8212 -2.1515 19 8 4.1710 0.0564 -2.0803 20 8 2.3264 0.7724 -3.2155 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 1.8306 -0.5260 0.7814 25 1 1.8971 4.1388 1.8745 26 1 3.3219 4.9318 0.0601 27 1 5.1869 6.3519 -3.2818 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382704148.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:13 Heat of formation + Delta-G solvation = -3.369486 kcal Electronic energy + Delta-G solvation = -17207.220306 eV Core-core repulsion = 14076.726442 eV Total energy + Delta-G solvation = -3130.493864 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.070 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.12394 -39.05293 -37.06617 -35.70907 -33.98910 -33.22695 -30.97237 -29.81036 -26.31890 -24.97102 -24.47694 -21.55113 -21.03769 -18.28886 -17.84870 -17.12203 -16.70153 -15.89435 -15.68530 -15.26391 -14.81595 -14.63414 -14.15870 -13.53128 -13.44431 -12.75546 -12.54199 -12.22537 -12.05378 -11.54437 -11.43789 -11.02306 -10.84306 -10.42376 -10.33558 -10.01168 -9.78741 -9.62453 -8.62575 -8.50058 -8.19108 -7.76562 -5.22988 0.97277 1.68626 1.85778 2.40779 2.62786 2.78178 2.83577 3.40576 3.64657 4.28830 4.51860 5.07570 5.38430 5.54113 5.68721 5.74297 5.84989 6.06258 6.15222 6.18486 6.60240 6.78500 6.82089 6.95664 7.04904 7.25325 7.37139 7.64102 7.81605 7.82651 7.90660 9.16450 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.022985 B = 0.011512 C = 0.008575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.908780 B = 2431.610710 C = 3264.507340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.658 5.658 3 C 0.170 3.830 4 C -0.102 4.102 5 F -0.156 7.156 6 C -0.060 4.060 7 C -0.211 4.211 8 C 0.105 3.895 9 C -0.393 4.393 10 H 0.103 0.897 11 C 0.078 3.922 12 N -0.727 5.727 13 Si 0.924 3.076 14 H -0.256 1.256 15 H -0.275 1.275 16 H -0.233 1.233 17 C -0.096 4.096 18 N 0.026 4.974 19 O -0.182 6.182 20 O -0.170 6.170 21 H 0.041 0.959 22 H 0.069 0.931 23 H 0.070 0.930 24 H 0.355 0.645 25 H 0.120 0.880 26 H 0.124 0.876 27 H 0.307 0.693 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.139 1.305 5.236 7.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.289 5.289 3 C 0.072 3.928 4 C -0.124 4.124 5 F -0.136 7.136 6 C -0.079 4.079 7 C -0.230 4.230 8 C 0.100 3.900 9 C -0.416 4.416 10 H 0.121 0.879 11 C -0.155 4.155 12 N -0.344 5.344 13 Si 0.747 3.253 14 H -0.182 1.182 15 H -0.201 1.201 16 H -0.155 1.155 17 C -0.180 4.180 18 N 0.522 4.478 19 O -0.385 6.385 20 O -0.377 6.377 21 H 0.060 0.940 22 H 0.087 0.913 23 H 0.089 0.911 24 H 0.178 0.822 25 H 0.138 0.862 26 H 0.141 0.859 27 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.078 1.808 4.987 7.344 hybrid contribution -0.456 0.434 0.887 1.088 sum -5.534 2.242 5.875 8.376 Atomic orbital electron populations 1.22298 0.85677 1.02109 1.01961 1.57971 1.09394 1.11058 1.50476 1.17677 0.94535 0.89244 0.91313 1.17370 1.08643 0.95332 0.91055 1.91286 1.73154 1.90528 1.58600 1.20402 0.95604 0.93478 0.98441 1.20528 1.06850 1.00191 0.95464 1.16925 0.91661 0.87788 0.93636 1.21011 1.17013 0.92762 1.10844 0.87941 1.27919 0.96457 0.98982 0.92163 1.68955 1.26088 1.18031 1.21280 0.86099 0.82054 0.78381 0.78753 1.18165 1.20142 1.15532 1.19313 1.15567 0.92048 0.91080 1.49851 0.98631 0.97747 1.01607 1.96164 1.14056 1.39800 1.88488 1.96156 1.46580 1.74421 1.20517 0.94020 0.91261 0.91106 0.82207 0.86218 0.85884 0.88057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.37 60.06 0.62 1.07 15 2 N -0.66 -12.71 6.46 -65.07 -0.42 -13.13 15 3 C 0.17 3.70 5.59 -83.73 -0.47 3.23 15 4 C -0.10 -2.08 7.04 -38.60 -0.27 -2.35 15 5 F -0.16 -2.97 15.08 2.25 0.03 -2.94 15 6 C -0.06 -1.17 9.94 -39.97 -0.40 -1.56 15 7 C -0.21 -4.46 7.24 -39.04 -0.28 -4.75 15 8 C 0.11 2.52 5.27 -106.81 -0.56 1.96 15 9 C -0.39 -9.85 9.48 -35.56 -0.34 -10.19 15 10 H 0.10 2.83 7.74 -52.49 -0.41 2.42 15 11 C 0.08 1.75 5.58 -15.19 -0.08 1.67 15 12 N -0.73 -16.35 13.89 55.99 0.78 -15.58 15 13 Si 0.92 17.30 24.57 -169.99 -4.18 13.13 15 14 H -0.26 -4.42 6.69 56.52 0.38 -4.05 15 15 H -0.28 -4.87 7.11 56.52 0.40 -4.47 15 16 H -0.23 -4.57 6.85 56.52 0.39 -4.18 15 17 C -0.10 -2.34 6.32 -78.92 -0.50 -2.83 15 18 N 0.03 0.67 3.78 34.46 0.13 0.81 15 19 O -0.18 -4.69 19.97 -31.56 -0.63 -5.32 15 20 O -0.17 -4.38 19.97 -31.57 -0.63 -5.01 15 21 H 0.04 0.67 6.05 -51.93 -0.31 0.35 15 22 H 0.07 1.20 8.14 -51.93 -0.42 0.78 15 23 H 0.07 0.96 8.14 -51.93 -0.42 0.54 15 24 H 0.36 6.12 8.85 -39.29 -0.35 5.78 15 25 H 0.12 1.95 8.06 -52.48 -0.42 1.52 15 26 H 0.12 2.41 4.27 -52.48 -0.22 2.19 15 27 H 0.31 5.92 8.27 -40.82 -0.34 5.59 15 LS Contribution 250.71 15.07 3.78 3.78 Total: -1.00 -26.39 250.71 -5.15 -31.54 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -1.73 Total: 6.47 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: -2.28 Total: -13.75 kcal Atomic # 7 Polarization: -28.39 SS G_CDS: 0.49 Total: -27.90 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: -1.26 Total: -10.33 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 0.03 Total: -2.94 kcal Atomic # 14 Polarization: 17.30 SS G_CDS: -4.18 Total: 13.13 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -26.39 -5.15 -31.54 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382704148.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.174 kcal (2) G-P(sol) polarization free energy of solvation -26.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds