Wall clock time and date at job start Mon Mar 30 2020 04:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.39771 * 111.00083 * 2 1 4 4 C 1.40035 * 119.99895 * 59.99759 * 3 2 1 5 5 F 1.35101 * 119.78020 * 0.02562 * 4 3 2 6 6 C 1.39056 * 120.44225 * 180.02562 * 4 3 2 7 7 C 1.36305 * 120.46035 * 0.02562 * 6 4 3 8 8 C 1.41482 * 119.98794 * 359.97438 * 7 6 4 9 9 C 1.40027 * 120.22002 * 179.97438 * 8 7 6 10 10 H 1.08000 * 119.99448 * 154.11185 * 9 8 7 11 11 C 1.46547 * 120.00258 * 334.39039 * 9 8 7 12 12 N 1.29496 * 120.00257 * 161.20064 * 11 9 8 13 13 Si 1.86804 * 119.99996 * 341.20055 * 11 9 8 14 14 H 1.48498 * 109.47130 * 94.25570 * 13 11 9 15 15 H 1.48500 * 109.47361 * 214.25947 * 13 11 9 16 16 H 1.48502 * 109.46801 * 334.25990 * 13 11 9 17 17 C 1.37790 * 120.00072 * 240.23955 * 3 2 1 18 18 N 1.48020 * 120.22398 * 0.02562 * 17 3 2 19 19 O 1.31693 * 119.99961 * 270.18085 * 18 17 3 20 20 O 1.31707 * 119.99940 * 90.19412 * 18 17 3 21 21 H 1.09006 * 109.47063 * 300.00157 * 1 2 3 22 22 H 1.08999 * 109.47604 * 59.99750 * 1 2 3 23 23 H 1.09003 * 109.47388 * 180.02562 * 1 2 3 24 24 H 1.00902 * 111.00517 * 123.94711 * 2 1 3 25 25 H 1.08003 * 119.76742 * 179.97438 * 6 4 3 26 26 H 1.08004 * 120.00779 * 179.97438 * 7 6 4 27 27 H 0.96995 * 120.00371 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9698 1.3049 0.0000 4 6 1.6546 2.1758 1.0502 5 9 0.8664 1.7500 2.0615 6 6 2.1475 3.4761 1.0593 7 6 2.9435 3.9204 0.0459 8 6 3.2739 3.0563 -1.0246 9 6 4.0908 3.5079 -2.0684 10 1 4.6777 2.8028 -2.6383 11 6 4.1540 4.9377 -2.3834 12 7 5.1453 5.4056 -3.0729 13 14 2.8047 6.0853 -1.7904 14 1 3.2080 6.6979 -0.4991 15 1 2.5852 7.1538 -2.7980 16 1 1.5482 5.3165 -1.6024 17 6 2.7697 1.7358 -1.0359 18 7 3.1012 0.8212 -2.1515 19 8 4.1710 0.0564 -2.0803 20 8 2.3264 0.7724 -3.2155 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 1.8306 -0.5260 0.7814 25 1 1.8971 4.1388 1.8745 26 1 3.3219 4.9318 0.0601 27 1 5.1869 6.3519 -3.2818 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382704148.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:12 Heat of formation + Delta-G solvation = -20.411477 kcal Electronic energy + Delta-G solvation = -17207.959302 eV Core-core repulsion = 14076.726442 eV Total energy + Delta-G solvation = -3131.232860 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.070 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.71948 -40.81549 -38.97191 -37.29145 -35.65220 -35.26407 -32.70311 -31.47630 -28.08195 -26.54674 -26.20079 -23.20909 -22.79866 -19.99618 -19.64008 -19.13030 -18.37950 -17.53419 -17.28051 -16.92711 -16.43232 -16.20405 -15.90776 -15.16600 -15.01087 -14.20061 -14.14011 -13.85796 -13.48839 -13.17931 -12.91764 -12.67513 -12.54954 -12.39488 -12.03730 -11.85113 -11.69388 -11.31565 -10.27483 -10.01350 -9.88002 -9.42476 -7.04255 -1.05378 -0.01162 0.18704 0.51182 1.13718 1.29748 1.40344 1.87619 2.06709 2.72736 2.85020 3.40301 3.86363 4.06498 4.11200 4.27967 4.37664 4.47673 4.54394 4.79614 4.95449 5.03051 5.11819 5.25102 5.38634 5.56049 5.76934 5.84302 6.00235 6.03514 6.20763 7.58723 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.022985 B = 0.011512 C = 0.008575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.908780 B = 2431.610710 C = 3264.507340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.672 5.672 3 C 0.164 3.836 4 C -0.085 4.085 5 F -0.143 7.143 6 C -0.050 4.050 7 C -0.211 4.211 8 C 0.100 3.900 9 C -0.437 4.437 10 H 0.054 0.946 11 C 0.049 3.951 12 N -0.760 5.760 13 Si 0.973 3.027 14 H -0.220 1.220 15 H -0.258 1.258 16 H -0.246 1.246 17 C -0.137 4.137 18 N 0.031 4.969 19 O -0.201 6.201 20 O -0.183 6.183 21 H 0.049 0.951 22 H 0.054 0.946 23 H 0.100 0.900 24 H 0.366 0.634 25 H 0.166 0.834 26 H 0.144 0.856 27 H 0.323 0.677 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.904 2.858 7.602 10.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.306 5.306 3 C 0.067 3.933 4 C -0.108 4.108 5 F -0.122 7.122 6 C -0.069 4.069 7 C -0.229 4.229 8 C 0.095 3.905 9 C -0.461 4.461 10 H 0.073 0.927 11 C -0.181 4.181 12 N -0.378 5.378 13 Si 0.790 3.210 14 H -0.144 1.144 15 H -0.183 1.183 16 H -0.170 1.170 17 C -0.221 4.221 18 N 0.525 4.475 19 O -0.402 6.402 20 O -0.389 6.389 21 H 0.067 0.933 22 H 0.073 0.927 23 H 0.119 0.881 24 H 0.190 0.810 25 H 0.184 0.816 26 H 0.161 0.839 27 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.813 3.341 7.363 10.574 hybrid contribution 0.053 -0.160 0.220 0.277 sum -6.761 3.182 7.583 10.646 Atomic orbital electron populations 1.22361 0.83749 1.04041 1.01531 1.57948 1.11134 1.10097 1.51379 1.17841 0.93939 0.90617 0.90945 1.17517 1.07467 0.95414 0.90392 1.91331 1.72629 1.90461 1.57793 1.20845 0.93756 0.93479 0.98820 1.20764 1.06861 1.00626 0.94698 1.17200 0.91150 0.88146 0.94025 1.20904 1.19013 0.93815 1.12375 0.92738 1.28689 0.98361 0.98949 0.92080 1.68924 1.27394 1.19504 1.21957 0.85436 0.78332 0.76750 0.80494 1.14376 1.18279 1.16953 1.19776 1.17952 0.92489 0.91862 1.50114 0.98072 0.97518 1.01837 1.96137 1.14626 1.40752 1.88704 1.96123 1.46749 1.74750 1.21327 0.93261 0.92671 0.88149 0.80955 0.81633 0.83895 0.86366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.92 10.37 127.69 1.32 2.24 15 2 N -0.67 -25.05 6.46 -359.77 -2.32 -27.38 15 3 C 0.16 6.95 5.59 38.21 0.21 7.17 15 4 C -0.09 -3.20 7.04 22.90 0.16 -3.04 15 5 F -0.14 -4.82 15.08 44.97 0.68 -4.14 15 6 C -0.05 -1.73 9.94 22.02 0.22 -1.51 15 7 C -0.21 -8.34 7.24 22.62 0.16 -8.17 15 8 C 0.10 4.80 5.27 -21.28 -0.11 4.69 15 9 C -0.44 -22.82 9.48 24.87 0.24 -22.59 15 10 H 0.05 3.26 7.74 -2.91 -0.02 3.24 15 11 C 0.05 2.21 5.58 87.21 0.49 2.70 15 12 N -0.76 -34.67 13.89 23.21 0.32 -34.35 15 13 Si 0.97 33.28 24.57 68.60 1.69 34.97 15 14 H -0.22 -6.31 6.69 99.48 0.67 -5.64 15 15 H -0.26 -8.07 7.11 99.48 0.71 -7.36 15 16 H -0.25 -8.94 6.85 99.48 0.68 -8.26 15 17 C -0.14 -6.74 6.32 37.04 0.23 -6.51 15 18 N 0.03 1.66 3.78 -44.89 -0.17 1.49 15 19 O -0.20 -10.82 19.97 3.53 0.07 -10.75 15 20 O -0.18 -9.77 19.97 3.50 0.07 -9.70 15 21 H 0.05 1.42 6.05 -2.38 -0.01 1.40 15 22 H 0.05 1.83 8.14 -2.39 -0.02 1.81 15 23 H 0.10 2.44 8.14 -2.39 -0.02 2.42 15 24 H 0.37 11.98 8.85 -89.69 -0.79 11.19 15 25 H 0.17 4.28 8.06 -2.91 -0.02 4.26 15 26 H 0.14 5.05 4.27 -2.91 -0.01 5.04 15 27 H 0.32 12.35 8.27 -92.71 -0.77 11.59 15 Total: -1.00 -58.86 250.71 3.64 -55.22 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 0.38 Total: 19.67 kcal Atomic # 6 Polarization: -27.95 SS G_CDS: 2.93 Total: -25.02 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: -2.17 Total: -60.24 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: 0.14 Total: -20.45 kcal Atomic # 9 Polarization: -4.82 SS G_CDS: 0.68 Total: -4.14 kcal Atomic # 14 Polarization: 33.28 SS G_CDS: 1.69 Total: 34.97 kcal Total: -58.86 3.64 -55.22 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382704148.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.806 kcal (2) G-P(sol) polarization free energy of solvation -58.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds