Wall clock time and date at job start Mon Mar 30 2020 04:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46503 * 119.99962 * 2 1 4 4 C 1.50693 * 109.47562 * 270.00502 * 3 2 1 5 5 H 1.08007 * 119.99854 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00221 * 180.02562 * 4 3 2 7 7 N 1.31508 * 119.99941 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 119.99976 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47346 * 89.99839 * 8 6 4 10 10 H 1.48502 * 109.47312 * 209.99672 * 8 6 4 11 11 H 1.48504 * 109.47341 * 329.99964 * 8 6 4 12 12 C 1.34781 * 120.00369 * 180.02562 * 2 1 3 13 13 O 1.21707 * 120.00368 * 180.02562 * 12 2 1 14 14 C 1.46539 * 119.99279 * 0.03080 * 12 2 1 15 15 C 1.36571 * 125.29484 * 171.33159 * 14 12 2 16 16 C 1.37654 * 114.42812 * 180.02562 * 15 14 12 17 17 N 1.40739 * 122.46400 * 180.02562 * 16 15 14 18 18 C 1.34423 * 115.07702 * 0.26915 * 16 15 14 19 19 S 1.75812 * 109.95557 * 359.59734 * 18 16 15 20 20 H 1.09002 * 109.46646 * 263.43997 * 1 2 3 21 21 H 1.08997 * 109.47157 * 23.43157 * 1 2 3 22 22 H 1.08991 * 109.47103 * 143.44289 * 1 2 3 23 23 H 1.08997 * 109.47051 * 30.01084 * 3 2 1 24 24 H 1.09004 * 109.46807 * 150.00040 * 3 2 1 25 25 H 0.97006 * 119.99987 * 180.02562 * 7 6 4 26 26 H 1.08006 * 122.78442 * 0.05933 * 15 14 12 27 27 H 0.96995 * 119.99911 * 359.97438 * 17 16 15 28 28 H 0.97002 * 119.99483 * 179.72602 * 17 16 15 29 29 H 1.08005 * 125.01978 * 179.69281 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4207 5 1 2.0980 1.0960 -2.2417 6 6 3.1268 2.8776 -1.6726 7 7 3.5541 3.6176 -0.6730 8 14 3.4387 3.4167 -3.4337 9 1 2.3090 4.2599 -3.9008 10 1 4.6992 4.1992 -3.4961 11 1 3.5556 2.2194 -4.3045 12 6 2.1390 -1.1672 -0.0005 13 8 3.3560 -1.1672 -0.0001 14 6 1.4062 -2.4362 -0.0018 15 6 1.9660 -3.6705 -0.1704 16 6 1.0677 -4.7129 -0.1330 17 7 1.4613 -6.0552 -0.2876 18 6 -0.2138 -4.3541 0.0569 19 16 -0.3309 -2.6069 0.2129 20 1 -0.3633 -0.1174 1.0210 21 1 -0.3633 0.9429 -0.4086 22 1 -0.3633 -0.8254 -0.6121 23 1 1.6085 2.0283 0.5140 24 1 3.1499 1.1384 0.5139 25 1 4.0310 4.4436 -0.8502 26 1 3.0256 -3.8166 -0.3201 27 1 2.3960 -6.2735 -0.4271 28 1 0.7983 -6.7623 -0.2512 29 1 -1.0479 -5.0383 0.1079 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385050555.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:50 Heat of formation + Delta-G solvation = -17.034178 kcal Electronic energy + Delta-G solvation = -14680.477000 eV Core-core repulsion = 12115.603766 eV Total energy + Delta-G solvation = -2564.873234 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.78068 -39.05592 -36.70641 -34.81586 -33.61064 -30.62906 -29.07724 -27.70883 -26.09531 -24.12356 -21.28510 -19.95565 -19.00738 -18.70612 -17.72627 -17.23283 -16.63765 -16.40767 -16.06789 -15.68234 -14.58655 -14.51728 -14.26044 -14.01680 -13.92508 -13.59397 -13.37389 -13.08578 -12.92663 -12.56880 -12.25221 -11.77845 -11.51776 -11.15513 -10.90660 -10.64717 -9.80837 -9.34608 -8.31749 -8.23736 -6.38827 -0.40426 0.61480 1.13869 1.37106 1.40264 1.50689 1.66012 2.13251 2.33487 2.40836 3.05950 3.22121 3.68630 4.15552 4.20071 4.47268 4.51400 4.74910 4.82058 4.96942 5.10905 5.20562 5.25472 5.48938 5.76256 6.02438 6.54102 6.58704 6.69238 7.12679 7.18566 7.34797 8.83594 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.040012 B = 0.006053 C = 0.005792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.623045 B = 4624.958877 C = 4833.068735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.600 5.600 3 C 0.260 3.740 4 C -0.547 4.547 5 H 0.052 0.948 6 C 0.010 3.990 7 N -0.926 5.926 8 Si 0.970 3.030 9 H -0.261 1.261 10 H -0.280 1.280 11 H -0.275 1.275 12 C 0.564 3.436 13 O -0.588 6.588 14 C -0.253 4.253 15 C -0.105 4.105 16 C 0.171 3.829 17 N -0.867 5.867 18 C -0.322 4.322 19 S 0.227 5.773 20 H 0.085 0.915 21 H 0.095 0.905 22 H 0.087 0.913 23 H 0.035 0.965 24 H 0.002 0.998 25 H 0.269 0.731 26 H 0.136 0.864 27 H 0.403 0.597 28 H 0.410 0.590 29 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.793 -16.161 1.061 20.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.329 5.329 3 C 0.139 3.861 4 C -0.586 4.586 5 H 0.071 0.929 6 C -0.189 4.189 7 N -0.566 5.566 8 Si 0.794 3.206 9 H -0.185 1.185 10 H -0.205 1.205 11 H -0.200 1.200 12 C 0.352 3.648 13 O -0.471 6.471 14 C -0.374 4.374 15 C -0.145 4.145 16 C 0.060 3.940 17 N -0.413 5.413 18 C -0.465 4.465 19 S 0.492 5.508 20 H 0.103 0.897 21 H 0.114 0.886 22 H 0.104 0.896 23 H 0.053 0.947 24 H 0.020 0.980 25 H 0.077 0.923 26 H 0.153 0.847 27 H 0.232 0.768 28 H 0.240 0.760 29 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -12.340 -14.914 1.368 19.405 hybrid contribution 1.968 -0.749 -0.955 2.313 sum -10.371 -15.663 0.413 18.790 Atomic orbital electron populations 1.22205 0.78275 1.04328 1.03461 1.48028 1.08185 1.06327 1.70393 1.18888 0.91287 0.79474 0.96459 1.21679 1.37328 1.06736 0.92838 0.92933 1.25849 0.94683 0.96284 1.02126 1.70043 1.38716 1.14770 1.33049 0.85389 0.78205 0.78163 0.78887 1.18545 1.20501 1.19973 1.17602 0.86625 0.83564 0.76972 1.90742 1.15297 1.87705 1.53380 1.24192 1.00467 0.96107 1.16636 1.20251 1.01172 0.90282 1.02750 1.16362 0.91547 0.86635 0.99456 1.42143 1.11974 1.02044 1.85132 1.25941 0.99575 1.01997 1.18956 1.84022 0.98839 0.98591 1.69306 0.89697 0.88625 0.89609 0.94734 0.97980 0.92254 0.84656 0.76829 0.75979 0.79365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.97 8.91 127.77 1.14 3.10 15 2 N -0.60 -27.20 2.86 -856.06 -2.45 -29.65 15 3 C 0.26 14.37 5.13 85.63 0.44 14.81 15 4 C -0.55 -32.19 9.39 25.60 0.24 -31.95 15 5 H 0.05 3.08 7.81 -2.91 -0.02 3.06 15 6 C 0.01 0.57 5.46 84.66 0.46 1.04 15 7 N -0.93 -56.27 13.29 21.45 0.28 -55.98 15 8 Si 0.97 45.30 29.54 68.60 2.03 47.33 15 9 H -0.26 -11.33 7.11 99.48 0.71 -10.62 15 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 15 11 H -0.27 -12.80 7.11 99.48 0.71 -12.09 15 12 C 0.56 26.32 7.63 86.41 0.66 26.98 15 13 O -0.59 -33.13 16.42 -4.37 -0.07 -33.20 15 14 C -0.25 -8.96 6.22 24.05 0.15 -8.81 15 15 C -0.11 -3.31 9.87 21.74 0.21 -3.10 15 16 C 0.17 4.07 6.73 36.70 0.25 4.32 15 17 N -0.87 -14.18 9.17 -54.09 -0.50 -14.68 15 18 C -0.32 -6.71 11.15 66.95 0.75 -5.96 15 19 S 0.23 5.48 18.09 -56.49 -1.02 4.45 15 20 H 0.08 2.23 7.75 -2.39 -0.02 2.21 15 21 H 0.10 3.01 8.02 -2.39 -0.02 2.99 15 22 H 0.09 2.41 4.61 -20.70 -0.10 2.31 15 23 H 0.03 1.89 8.07 -2.39 -0.02 1.87 15 24 H 0.00 0.13 7.42 -2.38 -0.02 0.11 15 25 H 0.27 15.23 8.31 -92.70 -0.77 14.46 15 26 H 0.14 4.45 8.05 -2.91 -0.02 4.43 15 27 H 0.40 5.79 8.91 -92.71 -0.83 4.97 15 28 H 0.41 4.49 8.90 -92.71 -0.83 3.67 15 29 H 0.19 2.67 8.06 -2.91 -0.02 2.65 15 Total: -1.00 -75.37 267.09 2.03 -73.34 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -0.54 Total: 7.96 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: 4.30 Total: 0.43 kcal Atomic # 7 Polarization: -97.65 SS G_CDS: -2.66 Total: -100.31 kcal Atomic # 8 Polarization: -33.13 SS G_CDS: -0.07 Total: -33.20 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Atomic # 16 Polarization: 5.48 SS G_CDS: -1.02 Total: 4.45 kcal Total: -75.37 2.03 -73.34 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385050555.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.307 kcal (2) G-P(sol) polarization free energy of solvation -75.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds