Wall clock time and date at job start Mon Mar 30 2020 04:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00069 * 2 1 4 4 H 1.48503 * 109.47522 * 270.00579 * 3 2 1 5 5 H 1.48504 * 109.47197 * 30.00724 * 3 2 1 6 6 H 1.48499 * 109.47321 * 150.00226 * 3 2 1 7 7 C 1.37878 * 120.00011 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99700 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00099 * 179.97438 * 7 2 1 10 10 O 1.42894 * 109.47157 * 180.02562 * 9 7 2 11 11 C 1.42898 * 113.99981 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47141 * 179.97438 * 11 10 9 13 13 N 1.46500 * 109.47291 * 179.97438 * 12 11 10 14 14 C 1.34228 * 125.74565 * 124.99582 * 13 12 11 15 15 C 1.38125 * 107.41038 * 180.02562 * 14 13 12 16 16 C 1.47283 * 126.42572 * 179.97438 * 15 14 13 17 17 O 1.21521 * 120.00065 * 0.02562 * 16 15 14 18 18 O 1.34756 * 120.00102 * 180.02562 * 16 15 14 19 19 C 1.41345 * 107.14816 * 0.24575 * 15 14 13 20 20 N 1.30435 * 108.00666 * 359.59210 * 19 15 14 21 21 H 0.97001 * 120.00084 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.46553 * 59.99801 * 9 7 2 23 23 H 1.09003 * 109.46865 * 300.00209 * 9 7 2 24 24 H 1.09005 * 109.47409 * 59.99822 * 11 10 9 25 25 H 1.08996 * 109.47400 * 299.99907 * 11 10 9 26 26 H 1.09001 * 109.47176 * 60.00471 * 12 11 10 27 27 H 1.08999 * 109.47389 * 299.99904 * 12 11 10 28 28 H 1.07997 * 126.29078 * 0.02562 * 14 13 12 29 29 H 0.96700 * 117.00284 * 180.02562 * 18 16 15 30 30 H 1.07996 * 125.99720 * 179.75393 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 8 3.9879 -2.5413 -0.0022 11 6 5.4124 -2.6541 -0.0022 12 6 5.8069 -4.1324 -0.0028 13 7 7.2673 -4.2481 -0.0035 14 6 8.0001 -4.9331 0.8885 15 6 9.3266 -4.7877 0.5323 16 6 10.4877 -5.3682 1.2283 17 8 10.3227 -6.0518 2.2193 18 8 11.7330 -5.1412 0.7661 19 6 9.3614 -3.9722 -0.6216 20 7 8.1333 -3.6625 -0.9336 21 1 -0.4850 0.8400 0.0004 22 1 3.8752 -0.6804 0.8889 23 1 3.8745 -0.6800 -0.8911 24 1 5.8152 -2.1713 0.8881 25 1 5.8152 -2.1699 -0.8918 26 1 5.4042 -4.6156 -0.8930 27 1 5.4042 -4.6163 0.8870 28 1 7.6218 -5.4947 1.7299 29 1 12.4632 -5.5434 1.2560 30 1 10.2488 -3.6621 -1.1533 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385176116.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:47 Heat of formation + Delta-G solvation = -61.146493 kcal Electronic energy + Delta-G solvation = -15971.150931 eV Core-core repulsion = 12961.611973 eV Total energy + Delta-G solvation = -3009.538958 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.094 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.66560 -39.82427 -37.29907 -36.18178 -34.04235 -32.66806 -30.78574 -29.50294 -27.62419 -24.31117 -23.29457 -21.98607 -20.95808 -20.65832 -18.24989 -17.61263 -17.03800 -16.19285 -16.10835 -15.68539 -15.22775 -14.96994 -14.37421 -14.33148 -13.72073 -13.19629 -13.14145 -12.98371 -12.53076 -11.75719 -11.67256 -11.39500 -11.20989 -10.98396 -10.78600 -10.55402 -9.97030 -9.84670 -9.32969 -9.08060 -9.02956 -8.62357 -6.20754 -4.21320 1.11307 1.86669 1.99822 2.98913 3.00428 3.19187 3.26582 3.27229 4.09386 4.27607 4.45684 4.66323 4.76945 4.95624 5.10266 5.11679 5.25770 5.32202 5.57359 5.77992 5.84844 6.17907 6.29424 6.44835 6.52921 6.85088 7.29126 7.45892 7.77564 7.78706 8.50172 8.88599 9.37207 10.91940 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.054288 B = 0.003739 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.646052 B = 7487.509020 C = 7667.287823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.074 3.926 3 Si 0.876 3.124 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.524 4.524 8 H 0.084 0.916 9 C 0.173 3.827 10 O -0.379 6.379 11 C 0.050 3.950 12 C 0.128 3.872 13 N -0.345 5.345 14 C 0.146 3.854 15 C -0.295 4.295 16 C 0.565 3.435 17 O -0.532 6.532 18 O -0.514 6.514 19 C 0.100 3.900 20 N -0.291 5.291 21 H 0.268 0.732 22 H 0.006 0.994 23 H 0.003 0.997 24 H 0.045 0.955 25 H 0.057 0.943 26 H 0.104 0.896 27 H 0.112 0.888 28 H 0.193 0.807 29 H 0.412 0.588 30 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.801 -8.834 0.857 22.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.128 4.128 3 Si 0.702 3.298 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.562 4.562 8 H 0.102 0.898 9 C 0.098 3.902 10 O -0.298 6.298 11 C -0.029 4.029 12 C 0.008 3.992 13 N -0.123 5.123 14 C -0.007 4.007 15 C -0.309 4.309 16 C 0.411 3.589 17 O -0.423 6.423 18 O -0.326 6.326 19 C -0.089 4.089 20 N -0.110 5.110 21 H 0.078 0.922 22 H 0.023 0.977 23 H 0.020 0.980 24 H 0.063 0.937 25 H 0.075 0.925 26 H 0.122 0.878 27 H 0.130 0.870 28 H 0.210 0.790 29 H 0.271 0.729 30 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 19.162 -8.197 0.059 20.842 hybrid contribution 1.544 0.469 0.915 1.855 sum 20.706 -7.728 0.973 22.123 Atomic orbital electron populations 1.69865 1.06061 1.27287 1.49805 1.24751 0.94823 0.98789 0.94440 0.86853 0.80311 0.83691 0.78926 1.19766 1.20612 1.19129 1.20844 0.87967 0.95477 1.51933 0.89816 1.20662 0.96276 0.78550 0.94757 1.87834 1.16035 1.30652 1.95251 1.22385 0.85819 0.93544 1.01108 1.21793 0.71886 0.99460 1.06025 1.48635 1.07703 1.36264 1.19669 1.23044 0.90320 0.93462 0.93918 1.19181 0.90970 1.15889 1.04829 1.19648 0.82067 0.76399 0.80820 1.90893 1.86519 1.38485 1.26364 1.84547 1.16772 1.72438 1.58798 1.24222 0.95902 0.94428 0.94327 1.77335 1.00140 1.20203 1.13339 0.92189 0.97658 0.97979 0.93683 0.92459 0.87795 0.86959 0.78978 0.72947 0.78637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.03 13.96 55.43 0.77 -26.26 16 2 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 3 Si 0.88 21.01 27.47 -169.99 -4.67 16.34 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 7 C -0.52 -15.20 9.99 -34.44 -0.34 -15.55 16 8 H 0.08 2.64 8.06 -52.49 -0.42 2.21 16 9 C 0.17 4.25 4.76 36.01 0.17 4.42 16 10 O -0.38 -8.25 10.33 -35.23 -0.36 -8.61 16 11 C 0.05 0.82 6.11 37.16 0.23 1.05 16 12 C 0.13 1.59 6.86 -4.04 -0.03 1.57 16 13 N -0.34 -4.21 3.65 -60.80 -0.22 -4.44 16 14 C 0.15 1.55 11.25 -16.55 -0.19 1.36 16 15 C -0.30 -3.24 6.13 -105.08 -0.64 -3.89 16 16 C 0.57 6.03 8.33 34.41 0.29 6.31 16 17 O -0.53 -7.07 17.69 -19.28 -0.34 -7.41 16 18 O -0.51 -3.86 13.28 -40.64 -0.54 -4.40 16 19 C 0.10 1.07 11.87 -16.96 -0.20 0.87 16 20 N -0.29 -3.85 12.33 30.87 0.38 -3.47 16 21 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 22 H 0.01 0.14 7.20 -51.93 -0.37 -0.24 16 23 H 0.00 0.06 7.57 -51.93 -0.39 -0.33 16 24 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 27 H 0.11 1.14 8.06 -51.93 -0.42 0.72 16 28 H 0.19 1.52 8.06 -52.49 -0.42 1.10 16 29 H 0.41 1.24 9.11 45.56 0.42 1.65 16 30 H 0.20 1.51 8.06 -52.49 -0.42 1.08 16 LS Contribution 279.05 15.07 4.21 4.21 Total: -1.00 -34.68 279.05 -4.06 -38.75 By element: Atomic # 1 Polarization: -0.43 SS G_CDS: -2.47 Total: -2.91 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -0.82 Total: -1.80 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: 0.93 Total: -34.17 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -1.24 Total: -20.42 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.67 Total: 16.34 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -34.68 -4.06 -38.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385176116.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.397 kcal (2) G-P(sol) polarization free energy of solvation -34.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds