Wall clock time and date at job start Mon Mar 30 2020 04:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00069 * 2 1 4 4 H 1.48503 * 109.47522 * 270.00579 * 3 2 1 5 5 H 1.48504 * 109.47197 * 30.00724 * 3 2 1 6 6 H 1.48499 * 109.47321 * 150.00226 * 3 2 1 7 7 C 1.37878 * 120.00011 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99700 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00099 * 179.97438 * 7 2 1 10 10 O 1.42894 * 109.47157 * 180.02562 * 9 7 2 11 11 C 1.42898 * 113.99981 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47141 * 179.97438 * 11 10 9 13 13 N 1.46500 * 109.47291 * 179.97438 * 12 11 10 14 14 C 1.34228 * 125.74565 * 124.99582 * 13 12 11 15 15 C 1.38125 * 107.41038 * 180.02562 * 14 13 12 16 16 C 1.47283 * 126.42572 * 179.97438 * 15 14 13 17 17 O 1.21521 * 120.00065 * 0.02562 * 16 15 14 18 18 O 1.34756 * 120.00102 * 180.02562 * 16 15 14 19 19 C 1.41345 * 107.14816 * 0.24575 * 15 14 13 20 20 N 1.30435 * 108.00666 * 359.59210 * 19 15 14 21 21 H 0.97001 * 120.00084 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.46553 * 59.99801 * 9 7 2 23 23 H 1.09003 * 109.46865 * 300.00209 * 9 7 2 24 24 H 1.09005 * 109.47409 * 59.99822 * 11 10 9 25 25 H 1.08996 * 109.47400 * 299.99907 * 11 10 9 26 26 H 1.09001 * 109.47176 * 60.00471 * 12 11 10 27 27 H 1.08999 * 109.47389 * 299.99904 * 12 11 10 28 28 H 1.07997 * 126.29078 * 0.02562 * 14 13 12 29 29 H 0.96700 * 117.00284 * 180.02562 * 18 16 15 30 30 H 1.07996 * 125.99720 * 179.75393 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 8 3.9879 -2.5413 -0.0022 11 6 5.4124 -2.6541 -0.0022 12 6 5.8069 -4.1324 -0.0028 13 7 7.2673 -4.2481 -0.0035 14 6 8.0001 -4.9331 0.8885 15 6 9.3266 -4.7877 0.5323 16 6 10.4877 -5.3682 1.2283 17 8 10.3227 -6.0518 2.2193 18 8 11.7330 -5.1412 0.7661 19 6 9.3614 -3.9722 -0.6216 20 7 8.1333 -3.6625 -0.9336 21 1 -0.4850 0.8400 0.0004 22 1 3.8752 -0.6804 0.8889 23 1 3.8745 -0.6800 -0.8911 24 1 5.8152 -2.1713 0.8881 25 1 5.8152 -2.1699 -0.8918 26 1 5.4042 -4.6156 -0.8930 27 1 5.4042 -4.6163 0.8870 28 1 7.6218 -5.4947 1.7299 29 1 12.4632 -5.5434 1.2560 30 1 10.2488 -3.6621 -1.1533 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385176116.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:45 Heat of formation + Delta-G solvation = -87.673254 kcal Electronic energy + Delta-G solvation = -15972.301217 eV Core-core repulsion = 12961.611973 eV Total energy + Delta-G solvation = -3010.689245 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.094 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -42.51484 -40.61181 -38.90694 -36.92148 -35.29829 -34.61734 -31.67071 -30.93473 -29.28286 -25.28845 -24.31589 -23.99215 -21.87053 -21.45858 -19.18484 -19.02069 -18.42779 -17.46645 -17.29039 -16.79176 -16.54989 -16.26541 -15.85040 -15.33844 -14.83375 -14.61095 -14.35290 -14.25940 -13.85516 -13.07794 -13.04910 -12.68332 -12.53824 -12.46412 -12.15418 -11.86854 -11.48089 -11.41012 -10.97796 -10.75562 -10.52858 -9.92938 -8.40788 -6.49538 0.29515 1.02258 1.11652 1.32475 1.34385 1.44893 2.20040 2.26215 2.30538 2.86149 2.91943 3.60404 3.71676 3.91414 3.93345 4.15305 4.21420 4.32002 4.47258 4.64181 4.68761 4.86015 4.91765 5.36600 5.38383 5.63796 5.68888 5.85054 6.44748 6.51891 6.60518 7.12182 7.14543 8.75927 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.054288 B = 0.003739 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.646052 B = 7487.509020 C = 7667.287823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.016 3.984 3 Si 0.952 3.048 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.247 1.247 7 C -0.549 4.549 8 H 0.036 0.964 9 C 0.182 3.818 10 O -0.398 6.398 11 C 0.048 3.952 12 C 0.138 3.862 13 N -0.354 5.354 14 C 0.151 3.849 15 C -0.308 4.308 16 C 0.573 3.427 17 O -0.563 6.563 18 O -0.505 6.505 19 C 0.109 3.891 20 N -0.330 5.330 21 H 0.274 0.726 22 H 0.015 0.985 23 H 0.012 0.988 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.105 0.895 27 H 0.137 0.863 28 H 0.217 0.783 29 H 0.433 0.567 30 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.231 -8.155 1.075 24.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.182 4.182 3 Si 0.773 3.227 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.171 1.171 7 C -0.586 4.586 8 H 0.055 0.945 9 C 0.106 3.894 10 O -0.317 6.317 11 C -0.030 4.030 12 C 0.017 3.983 13 N -0.132 5.132 14 C -0.002 4.002 15 C -0.322 4.322 16 C 0.419 3.581 17 O -0.456 6.456 18 O -0.319 6.319 19 C -0.079 4.079 20 N -0.149 5.149 21 H 0.083 0.917 22 H 0.033 0.967 23 H 0.030 0.970 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.123 0.877 27 H 0.155 0.845 28 H 0.234 0.766 29 H 0.294 0.706 30 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 21.639 -7.543 0.270 22.918 hybrid contribution 0.851 0.142 0.835 1.201 sum 22.490 -7.401 1.105 23.702 Atomic orbital electron populations 1.70014 1.08179 1.28893 1.50712 1.25788 0.95772 1.03279 0.93406 0.85656 0.79415 0.77779 0.79809 1.18438 1.19699 1.17074 1.21131 0.90647 0.94129 1.52723 0.94519 1.20363 0.93450 0.80217 0.95362 1.87772 1.19521 1.29009 1.95362 1.22566 0.82665 0.96615 1.01110 1.21675 0.72473 0.96699 1.07433 1.48547 1.07402 1.37065 1.20163 1.23507 0.90265 0.92610 0.93774 1.19381 0.91420 1.16218 1.05138 1.19553 0.82771 0.75623 0.80122 1.90886 1.87093 1.39947 1.27700 1.84499 1.16427 1.72177 1.58753 1.24679 0.95995 0.93235 0.93954 1.77304 1.01148 1.21821 1.14617 0.91663 0.96711 0.97040 0.93049 0.92971 0.87653 0.84518 0.76609 0.70553 0.76082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.05 13.96 21.45 0.30 -57.75 16 2 C 0.02 0.94 5.47 84.65 0.46 1.40 16 3 Si 0.95 42.57 27.47 68.60 1.88 44.46 16 4 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 5 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 6 H -0.25 -10.21 6.54 99.48 0.65 -9.56 16 7 C -0.55 -32.55 9.99 25.60 0.26 -32.29 16 8 H 0.04 2.43 8.06 -2.91 -0.02 2.41 16 9 C 0.18 8.83 4.76 71.24 0.34 9.17 16 10 O -0.40 -17.19 10.33 -148.98 -1.54 -18.73 16 11 C 0.05 1.53 6.11 71.98 0.44 1.97 16 12 C 0.14 3.21 6.86 86.38 0.59 3.80 16 13 N -0.35 -8.04 3.65 -346.26 -1.26 -9.30 16 14 C 0.15 2.89 11.25 84.30 0.95 3.84 16 15 C -0.31 -6.13 6.13 -20.16 -0.12 -6.26 16 16 C 0.57 11.02 8.33 70.20 0.58 11.60 16 17 O -0.56 -14.03 17.69 19.77 0.35 -13.68 16 18 O -0.51 -6.25 13.28 -56.67 -0.75 -7.00 16 19 C 0.11 2.13 11.87 85.66 1.02 3.15 16 20 N -0.33 -8.22 12.33 -56.25 -0.69 -8.91 16 21 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 22 H 0.02 0.70 7.20 -2.39 -0.02 0.69 16 23 H 0.01 0.55 7.57 -2.39 -0.02 0.53 16 24 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 25 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 27 H 0.14 2.48 8.06 -2.39 -0.02 2.46 16 28 H 0.22 2.88 8.06 -2.91 -0.02 2.85 16 29 H 0.43 1.42 9.11 -74.06 -0.67 0.75 16 30 H 0.22 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -75.82 279.05 3.24 -72.58 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: 0.44 Total: 1.96 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: 4.52 Total: -3.62 kcal Atomic # 7 Polarization: -74.31 SS G_CDS: -1.66 Total: -75.97 kcal Atomic # 8 Polarization: -37.48 SS G_CDS: -1.94 Total: -39.42 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 1.88 Total: 44.46 kcal Total: -75.82 3.24 -72.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385176116.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.088 kcal (2) G-P(sol) polarization free energy of solvation -75.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds