Wall clock time and date at job start Mon Mar 30 2020 04:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86798 * 119.99894 * 2 1 4 4 H 1.48499 * 109.46681 * 269.99932 * 3 2 1 5 5 H 1.48496 * 109.47459 * 29.99839 * 3 2 1 6 6 H 1.48496 * 109.46901 * 150.00465 * 3 2 1 7 7 C 1.37875 * 119.99866 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99939 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00179 * 359.97438 * 7 2 1 10 10 O 1.42901 * 109.47230 * 180.02562 * 9 7 2 11 11 C 1.42897 * 113.99944 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47216 * 179.97438 * 11 10 9 13 13 N 1.46503 * 109.47344 * 179.97438 * 12 11 10 14 14 N 1.28443 * 125.19545 * 270.00255 * 13 12 11 15 15 C 1.30877 * 110.94099 * 179.97438 * 14 13 12 16 16 C 1.39642 * 107.88134 * 359.75825 * 15 14 13 17 17 C 1.36647 * 125.19252 * 89.99718 * 13 12 11 18 18 C 1.47002 * 126.89750 * 359.97438 * 17 13 12 19 19 O 1.21557 * 120.00076 * 179.97438 * 18 17 13 20 20 O 1.34814 * 120.00272 * 359.97438 * 18 17 13 21 21 H 0.96996 * 119.99637 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.47064 * 59.99911 * 9 7 2 23 23 H 1.08999 * 109.47380 * 300.00082 * 9 7 2 24 24 H 1.09003 * 109.47213 * 59.99967 * 11 10 9 25 25 H 1.09005 * 109.47311 * 299.99718 * 11 10 9 26 26 H 1.09003 * 109.46951 * 59.99936 * 12 11 10 27 27 H 1.09004 * 109.47049 * 299.99611 * 12 11 10 28 28 H 1.07995 * 126.05781 * 179.97438 * 15 14 13 29 29 H 1.08000 * 127.32044 * 180.27029 * 16 15 14 30 30 H 0.96700 * 117.00422 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0017 10 8 2.1797 -3.5853 0.0027 11 6 1.5651 -4.8754 0.0032 12 6 2.6480 -5.9562 0.0036 13 7 2.0180 -7.2789 0.0048 14 7 1.7000 -7.9464 1.0551 15 6 1.1538 -9.0916 0.7338 16 6 1.1100 -9.1698 -0.6597 17 6 1.6788 -7.9907 -1.1112 18 6 1.8722 -7.5833 -2.5104 19 8 1.5219 -8.3197 -3.4118 20 8 2.4380 -6.3929 -2.7939 21 1 -0.4849 0.8400 0.0004 22 1 0.6240 -2.5575 -0.8880 23 1 0.6247 -2.5564 0.8919 24 1 0.9452 -4.9830 -0.8869 25 1 0.9446 -4.9820 0.8931 26 1 3.2682 -5.8488 0.8935 27 1 3.2681 -5.8496 -0.8865 28 1 0.7969 -9.8415 1.4242 29 1 0.7179 -9.9789 -1.2581 30 1 2.5440 -6.1686 -3.7286 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385321306.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:07 Heat of formation + Delta-G solvation = -60.656223 kcal Electronic energy + Delta-G solvation = -16601.776111 eV Core-core repulsion = 13592.258412 eV Total energy + Delta-G solvation = -3009.517698 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.094 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.70878 -39.97612 -37.11584 -36.29871 -33.88399 -32.68798 -31.19227 -29.13175 -26.95691 -24.70186 -23.24009 -22.36410 -21.65219 -20.37778 -18.42495 -17.62612 -16.71128 -16.26912 -15.84199 -15.44305 -15.22412 -15.12985 -14.35829 -14.08039 -13.70138 -13.37862 -13.31291 -12.62164 -12.13156 -11.79106 -11.35693 -11.14130 -10.94788 -10.92752 -10.80412 -10.69805 -10.18908 -9.43334 -9.25235 -9.18216 -8.98532 -8.32263 -6.18724 -4.21581 0.86475 2.22866 2.43039 2.75285 2.78795 3.25819 3.31203 3.36189 4.26945 4.37467 4.60279 4.77398 5.05195 5.17932 5.18988 5.36572 5.45549 5.50582 5.67056 5.93392 6.00558 6.22140 6.29861 6.56907 6.95711 7.29741 7.60846 7.69251 7.90875 8.02409 8.37995 8.89807 9.43483 10.92720 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.037841 B = 0.004776 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.770146 B = 5861.651594 C = 6250.214223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.910 3.090 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.518 4.518 8 H 0.068 0.932 9 C 0.198 3.802 10 O -0.389 6.389 11 C 0.057 3.943 12 C 0.116 3.884 13 N -0.250 5.250 14 N -0.258 5.258 15 C -0.010 4.010 16 C -0.149 4.149 17 C -0.035 4.035 18 C 0.561 3.439 19 O -0.504 6.504 20 O -0.505 6.505 21 H 0.265 0.735 22 H 0.008 0.992 23 H 0.008 0.992 24 H 0.045 0.955 25 H 0.046 0.954 26 H 0.111 0.889 27 H 0.121 0.879 28 H 0.191 0.809 29 H 0.167 0.833 30 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.270 -15.808 -2.293 16.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.737 3.263 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.556 4.556 8 H 0.086 0.914 9 C 0.124 3.876 10 O -0.308 6.308 11 C -0.022 4.022 12 C -0.004 4.004 13 N -0.042 5.042 14 N -0.093 5.093 15 C -0.185 4.185 16 C -0.178 4.178 17 C -0.160 4.160 18 C 0.403 3.597 19 O -0.391 6.391 20 O -0.317 6.317 21 H 0.075 0.925 22 H 0.026 0.974 23 H 0.026 0.974 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.129 0.871 27 H 0.139 0.861 28 H 0.208 0.792 29 H 0.184 0.816 30 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 3.556 -15.127 -1.257 15.590 hybrid contribution -0.256 0.523 -1.282 1.408 sum 3.300 -14.604 -2.539 15.186 Atomic orbital electron populations 1.69964 1.06155 1.27353 1.50147 1.24957 0.94995 0.99512 0.94961 0.86298 0.79646 0.82053 0.78282 1.20400 1.21018 1.19553 1.21018 0.94117 0.89092 1.51381 0.91367 1.20276 0.88643 0.82994 0.95713 1.87796 1.35598 1.12135 1.95321 1.22333 0.93741 0.85671 1.00412 1.22104 0.95831 0.75471 1.06964 1.46006 1.41236 1.15109 1.01848 1.73277 1.15455 1.06687 1.13855 1.23655 1.04178 0.96025 0.94625 1.22198 1.03174 0.97188 0.95253 1.20630 1.12523 0.96638 0.86193 1.19353 0.73928 0.79014 0.87360 1.90940 1.47954 1.53489 1.46727 1.84670 1.74296 1.36364 1.36402 0.92516 0.97445 0.97436 0.93727 0.93536 0.87092 0.86078 0.79173 0.81570 0.71903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.45 13.29 55.43 0.74 -25.71 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.52 -14.86 9.43 -34.44 -0.32 -15.18 16 8 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 9 C 0.20 5.30 5.69 36.01 0.20 5.50 16 10 O -0.39 -8.94 10.33 -35.23 -0.36 -9.31 16 11 C 0.06 1.04 6.26 37.16 0.23 1.28 16 12 C 0.12 1.69 6.15 -4.04 -0.02 1.67 16 13 N -0.25 -3.56 3.35 -57.15 -0.19 -3.75 16 14 N -0.26 -3.64 11.90 30.58 0.36 -3.27 16 15 C -0.01 -0.12 12.03 -17.43 -0.21 -0.32 16 16 C -0.15 -1.72 10.85 -38.96 -0.42 -2.14 16 17 C -0.03 -0.47 6.96 -82.08 -0.57 -1.04 16 18 C 0.56 7.33 8.31 34.28 0.28 7.61 16 19 O -0.50 -7.44 17.71 -19.31 -0.34 -7.78 16 20 O -0.50 -5.59 10.90 -40.80 -0.44 -6.04 16 21 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 22 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 23 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 24 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.11 1.53 8.14 -51.93 -0.42 1.11 16 27 H 0.12 1.64 6.15 -51.93 -0.32 1.32 16 28 H 0.19 1.39 8.06 -52.49 -0.42 0.96 16 29 H 0.17 1.53 8.06 -52.49 -0.42 1.11 16 30 H 0.42 2.71 9.11 45.56 0.42 3.13 16 LS Contribution 277.67 15.07 4.18 4.18 Total: -1.00 -33.48 277.67 -4.41 -37.89 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: -2.41 Total: -1.44 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -0.93 Total: -1.11 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: 0.91 Total: -32.74 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -1.15 Total: -23.13 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -33.48 -4.41 -37.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385321306.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.765 kcal (2) G-P(sol) polarization free energy of solvation -33.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds