Wall clock time and date at job start Mon Mar 30 2020 04:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86798 * 119.99894 * 2 1 4 4 H 1.48499 * 109.46681 * 269.99932 * 3 2 1 5 5 H 1.48496 * 109.47459 * 29.99839 * 3 2 1 6 6 H 1.48496 * 109.46901 * 150.00465 * 3 2 1 7 7 C 1.37875 * 119.99866 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99939 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00179 * 359.97438 * 7 2 1 10 10 O 1.42901 * 109.47230 * 180.02562 * 9 7 2 11 11 C 1.42897 * 113.99944 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47216 * 179.97438 * 11 10 9 13 13 N 1.46503 * 109.47344 * 179.97438 * 12 11 10 14 14 N 1.28443 * 125.19545 * 270.00255 * 13 12 11 15 15 C 1.30877 * 110.94099 * 179.97438 * 14 13 12 16 16 C 1.39642 * 107.88134 * 359.75825 * 15 14 13 17 17 C 1.36647 * 125.19252 * 89.99718 * 13 12 11 18 18 C 1.47002 * 126.89750 * 359.97438 * 17 13 12 19 19 O 1.21557 * 120.00076 * 179.97438 * 18 17 13 20 20 O 1.34814 * 120.00272 * 359.97438 * 18 17 13 21 21 H 0.96996 * 119.99637 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.47064 * 59.99911 * 9 7 2 23 23 H 1.08999 * 109.47380 * 300.00082 * 9 7 2 24 24 H 1.09003 * 109.47213 * 59.99967 * 11 10 9 25 25 H 1.09005 * 109.47311 * 299.99718 * 11 10 9 26 26 H 1.09003 * 109.46951 * 59.99936 * 12 11 10 27 27 H 1.09004 * 109.47049 * 299.99611 * 12 11 10 28 28 H 1.07995 * 126.05781 * 179.97438 * 15 14 13 29 29 H 1.08000 * 127.32044 * 180.27029 * 16 15 14 30 30 H 0.96700 * 117.00422 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0017 10 8 2.1797 -3.5853 0.0027 11 6 1.5651 -4.8754 0.0032 12 6 2.6480 -5.9562 0.0036 13 7 2.0180 -7.2789 0.0048 14 7 1.7000 -7.9464 1.0551 15 6 1.1538 -9.0916 0.7338 16 6 1.1100 -9.1698 -0.6597 17 6 1.6788 -7.9907 -1.1112 18 6 1.8722 -7.5833 -2.5104 19 8 1.5219 -8.3197 -3.4118 20 8 2.4380 -6.3929 -2.7939 21 1 -0.4849 0.8400 0.0004 22 1 0.6240 -2.5575 -0.8880 23 1 0.6247 -2.5564 0.8919 24 1 0.9452 -4.9830 -0.8869 25 1 0.9446 -4.9820 0.8931 26 1 3.2682 -5.8488 0.8935 27 1 3.2681 -5.8496 -0.8865 28 1 0.7969 -9.8415 1.4242 29 1 0.7179 -9.9789 -1.2581 30 1 2.5440 -6.1686 -3.7286 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385321306.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:07 Heat of formation + Delta-G solvation = -85.145277 kcal Electronic energy + Delta-G solvation = -16602.838036 eV Core-core repulsion = 13592.258412 eV Total energy + Delta-G solvation = -3010.579623 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.094 amu Computer time = -1.35 seconds Orbital eigenvalues (eV) -43.69018 -40.96941 -38.87049 -37.30426 -35.32620 -34.58054 -32.17291 -30.60411 -28.84206 -25.74192 -24.75058 -24.26451 -22.63502 -21.39339 -19.44519 -18.75846 -18.59641 -17.61284 -17.21986 -17.01741 -16.57198 -16.37477 -16.03346 -15.22628 -15.07674 -14.73668 -14.22602 -14.10393 -13.92530 -12.96019 -12.90812 -12.77203 -12.65368 -12.51057 -12.22014 -12.08183 -11.71189 -11.35906 -10.94793 -10.46177 -10.37140 -10.19042 -8.34566 -6.47748 -0.14057 1.16315 1.41693 1.43973 1.48888 1.56349 1.81941 1.85041 2.34354 3.00142 3.09258 3.40473 3.73583 3.94604 3.94808 4.16873 4.27250 4.44246 4.57972 4.64702 4.79180 4.84721 5.09384 5.36324 5.40501 5.51535 5.58654 5.89122 6.38915 6.72349 6.74049 6.94840 7.23989 8.77845 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.037841 B = 0.004776 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.770146 B = 5861.651594 C = 6250.214223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.007 3.993 3 Si 0.986 3.014 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.549 4.549 8 H 0.068 0.932 9 C 0.211 3.789 10 O -0.395 6.395 11 C 0.058 3.942 12 C 0.130 3.870 13 N -0.265 5.265 14 N -0.289 5.289 15 C 0.003 3.997 16 C -0.142 4.142 17 C -0.056 4.056 18 C 0.566 3.434 19 O -0.526 6.526 20 O -0.506 6.506 21 H 0.271 0.729 22 H -0.010 1.010 23 H -0.014 1.014 24 H 0.043 0.957 25 H 0.039 0.961 26 H 0.118 0.882 27 H 0.132 0.868 28 H 0.229 0.771 29 H 0.190 0.810 30 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.973 -16.155 -2.291 16.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.192 4.192 3 Si 0.808 3.192 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.586 4.586 8 H 0.086 0.914 9 C 0.136 3.864 10 O -0.314 6.314 11 C -0.021 4.021 12 C 0.010 3.990 13 N -0.056 5.056 14 N -0.123 5.123 15 C -0.172 4.172 16 C -0.170 4.170 17 C -0.180 4.180 18 C 0.410 3.590 19 O -0.415 6.415 20 O -0.321 6.321 21 H 0.080 0.920 22 H 0.007 0.993 23 H 0.004 0.996 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.136 0.864 27 H 0.150 0.850 28 H 0.246 0.754 29 H 0.207 0.793 30 H 0.303 0.697 Dipole moment (debyes) X Y Z Total from point charges 4.271 -15.485 -1.268 16.113 hybrid contribution -0.539 0.497 -1.284 1.479 sum 3.733 -14.988 -2.552 15.655 Atomic orbital electron populations 1.70076 1.07888 1.28784 1.50329 1.25982 0.95927 1.03486 0.93776 0.85141 0.78375 0.76781 0.78883 1.19198 1.20164 1.18629 1.21371 0.94360 0.90379 1.52509 0.91384 1.19901 0.88551 0.84206 0.93771 1.87740 1.35154 1.13259 1.95261 1.22476 0.95140 0.84542 0.99927 1.21860 0.94374 0.74924 1.07884 1.45848 1.42608 1.14963 1.02184 1.73264 1.16686 1.07972 1.14328 1.24355 1.02170 0.95510 0.95214 1.22625 1.01773 0.96922 0.95701 1.20973 1.13277 0.97495 0.86245 1.19326 0.73479 0.79091 0.87131 1.90927 1.49096 1.54188 1.47240 1.84631 1.73701 1.35499 1.38293 0.91987 0.99263 0.99577 0.93873 0.94283 0.86427 0.85032 0.75426 0.79284 0.69739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.32 13.29 21.45 0.28 -55.03 16 2 C 0.01 0.39 5.46 84.65 0.46 0.85 16 3 Si 0.99 43.27 29.54 68.60 2.03 45.30 16 4 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 5 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 6 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 7 C -0.55 -31.82 9.43 25.60 0.24 -31.58 16 8 H 0.07 3.85 7.81 -2.91 -0.02 3.83 16 9 C 0.21 11.61 5.69 71.24 0.41 12.02 16 10 O -0.40 -18.46 10.33 -148.98 -1.54 -20.00 16 11 C 0.06 2.12 6.26 71.98 0.45 2.57 16 12 C 0.13 3.73 6.15 86.38 0.53 4.26 16 13 N -0.26 -7.30 3.35 -334.72 -1.12 -8.42 16 14 N -0.29 -7.75 11.90 -57.16 -0.68 -8.43 16 15 C 0.00 0.05 12.03 85.17 1.02 1.08 16 16 C -0.14 -2.94 10.85 22.67 0.25 -2.70 16 17 C -0.06 -1.43 6.96 40.75 0.28 -1.15 16 18 C 0.57 14.31 8.31 70.12 0.58 14.90 16 19 O -0.53 -15.05 17.71 19.65 0.35 -14.70 16 20 O -0.51 -10.81 10.90 -57.26 -0.62 -11.44 16 21 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 22 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 23 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 24 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 26 H 0.12 3.19 8.14 -2.39 -0.02 3.17 16 27 H 0.13 3.46 6.15 -2.38 -0.01 3.45 16 28 H 0.23 2.48 8.06 -2.91 -0.02 2.46 16 29 H 0.19 2.95 8.06 -2.91 -0.02 2.93 16 30 H 0.44 5.25 9.11 -74.06 -0.67 4.58 16 Total: -1.00 -71.53 277.67 3.42 -68.12 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: 0.49 Total: 4.35 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: 4.23 Total: 0.25 kcal Atomic # 7 Polarization: -70.36 SS G_CDS: -1.52 Total: -71.88 kcal Atomic # 8 Polarization: -44.33 SS G_CDS: -1.81 Total: -46.14 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -71.53 3.42 -68.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385321306.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.027 kcal (2) G-P(sol) polarization free energy of solvation -71.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -1.35 seconds