Wall clock time and date at job start Mon Mar 30 2020 04:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 119.99977 * 2 1 4 4 H 1.48502 * 109.46783 * 269.99600 * 3 2 1 5 5 H 1.48496 * 109.47064 * 29.99188 * 3 2 1 6 6 H 1.48498 * 109.47283 * 149.99399 * 3 2 1 7 7 C 1.37878 * 120.00125 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99961 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99969 * 0.02562 * 7 2 1 10 10 O 1.42895 * 109.47162 * 180.02562 * 9 7 2 11 11 C 1.42906 * 114.00208 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47355 * 179.97438 * 11 10 9 13 13 N 1.46502 * 109.47108 * 179.97438 * 12 11 10 14 14 C 1.35860 * 126.13027 * 270.02563 * 13 12 11 15 15 N 1.30156 * 109.02265 * 179.70617 * 14 13 12 16 16 C 1.35806 * 108.85422 * 0.44199 * 15 14 13 17 17 C 1.47169 * 126.24265 * 179.82297 * 16 15 14 18 18 O 1.21553 * 119.99848 * 179.69293 * 17 16 15 19 19 O 1.34785 * 120.00388 * 359.41458 * 17 16 15 20 20 C 1.35336 * 126.12149 * 90.00581 * 13 12 11 21 21 H 0.96997 * 120.00476 * 0.02562 * 1 2 3 22 22 H 1.09009 * 109.47085 * 60.00110 * 9 7 2 23 23 H 1.08997 * 109.47296 * 300.00601 * 9 7 2 24 24 H 1.09002 * 109.46901 * 59.99705 * 11 10 9 25 25 H 1.08998 * 109.46926 * 300.00069 * 11 10 9 26 26 H 1.09002 * 109.47129 * 60.00124 * 12 11 10 27 27 H 1.08998 * 109.47388 * 300.00065 * 12 11 10 28 28 H 1.08005 * 125.49130 * 359.94741 * 14 13 12 29 29 H 0.96694 * 117.00487 * 180.27009 * 19 17 16 30 30 H 1.07995 * 126.56840 * 0.03928 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.6998 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 2.1796 -3.5852 0.0017 11 6 1.5651 -4.8754 0.0013 12 6 2.6480 -5.9562 0.0020 13 7 2.0180 -7.2788 0.0021 14 6 1.6726 -8.0015 1.0995 15 7 1.1323 -9.1220 0.7167 16 6 1.1206 -9.1625 -0.6407 17 6 0.5992 -10.2577 -1.4740 18 8 0.6410 -10.1722 -2.6858 19 8 0.0805 -11.3580 -0.8937 20 6 1.6754 -7.9994 -1.0910 21 1 -0.4851 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8898 23 1 0.6240 -2.5567 0.8902 24 1 0.9459 -4.9826 -0.8894 25 1 0.9440 -4.9823 0.8906 26 1 3.2675 -5.8492 0.8924 27 1 3.2688 -5.8491 -0.8875 28 1 1.8190 -7.6939 2.1244 29 1 -0.2458 -12.0524 -1.4821 30 1 1.8147 -7.7099 -2.1221 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385827561.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:45 Heat of formation + Delta-G solvation = -105.166339 kcal Electronic energy + Delta-G solvation = -15982.834474 eV Core-core repulsion = 12971.386672 eV Total energy + Delta-G solvation = -3011.447802 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.094 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -43.34249 -40.81365 -38.82707 -37.06206 -35.69452 -34.80247 -31.17628 -30.75240 -28.91858 -25.72977 -24.61269 -24.11310 -22.17542 -21.59722 -19.10377 -18.73771 -18.58926 -17.52758 -17.02779 -16.96037 -16.60558 -16.42408 -15.89404 -15.31552 -15.02002 -14.79237 -14.34131 -14.19080 -13.92840 -12.96285 -12.90363 -12.71072 -12.56497 -12.48877 -12.10098 -11.95898 -11.38458 -11.32222 -10.94878 -10.92332 -10.35726 -9.84835 -8.34619 -6.47563 0.24201 1.18388 1.39318 1.43058 1.43777 1.56162 2.19391 2.25149 2.34744 3.00379 3.10804 3.44325 3.69272 3.85394 4.03217 4.15380 4.28137 4.34933 4.57171 4.64644 4.83374 4.98952 5.11611 5.25714 5.51286 5.52059 5.90036 5.93201 6.41630 6.64105 6.73798 7.06099 7.24473 8.77450 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.058458 B = 0.003551 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.859925 B = 7882.732656 C = 8018.359025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.983 3.017 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.550 4.550 8 H 0.068 0.932 9 C 0.210 3.790 10 O -0.400 6.400 11 C 0.043 3.957 12 C 0.118 3.882 13 N -0.444 5.444 14 C 0.201 3.799 15 N -0.480 5.480 16 C -0.090 4.090 17 C 0.578 3.422 18 O -0.547 6.547 19 O -0.500 6.500 20 C 0.059 3.941 21 H 0.271 0.729 22 H -0.013 1.013 23 H -0.009 1.009 24 H 0.040 0.960 25 H 0.050 0.950 26 H 0.134 0.866 27 H 0.120 0.880 28 H 0.251 0.749 29 H 0.431 0.569 30 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.205 -16.082 0.489 16.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.192 4.192 3 Si 0.806 3.194 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.185 1.185 7 C -0.588 4.588 8 H 0.086 0.914 9 C 0.136 3.864 10 O -0.319 6.319 11 C -0.035 4.035 12 C -0.004 4.004 13 N -0.125 5.125 14 C -0.083 4.083 15 N -0.198 5.198 16 C -0.216 4.216 17 C 0.424 3.576 18 O -0.438 6.438 19 O -0.313 6.313 20 C -0.082 4.082 21 H 0.080 0.920 22 H 0.005 0.995 23 H 0.008 0.992 24 H 0.059 0.941 25 H 0.068 0.932 26 H 0.152 0.848 27 H 0.138 0.862 28 H 0.266 0.734 29 H 0.293 0.707 30 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 4.144 -16.143 0.958 16.694 hybrid contribution -0.406 0.898 -0.964 1.379 sum 3.738 -15.245 -0.006 15.697 Atomic orbital electron populations 1.70061 1.07845 1.28766 1.50345 1.25963 0.95913 1.03480 0.93879 0.85172 0.78464 0.76960 0.78785 1.19440 1.20255 1.18497 1.21401 0.94392 0.90550 1.52413 0.91371 1.19876 0.88499 0.84217 0.93857 1.87734 1.35233 1.13582 1.95312 1.22704 0.95693 0.84530 1.00618 1.21824 0.94109 0.75820 1.08628 1.45554 1.44360 1.15962 1.06611 1.26113 0.99220 0.87688 0.95272 1.70709 1.18549 1.20568 1.09991 1.19491 1.14417 0.96552 0.91138 1.19346 0.73012 0.80777 0.84516 1.90905 1.56341 1.80926 1.15659 1.84639 1.72459 1.28787 1.45384 1.22948 0.99134 0.91410 0.94741 0.92019 0.99507 0.99162 0.94133 0.93190 0.84817 0.86176 0.73356 0.70744 0.77533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.19 13.29 21.45 0.28 -53.91 16 2 C 0.01 0.35 5.46 84.66 0.46 0.82 16 3 Si 0.98 42.37 29.54 68.60 2.03 44.40 16 4 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.28 -11.56 7.11 99.48 0.71 -10.86 16 6 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 7 C -0.55 -30.87 9.43 25.60 0.24 -30.63 16 8 H 0.07 3.73 7.81 -2.91 -0.02 3.70 16 9 C 0.21 11.00 5.69 71.24 0.41 11.41 16 10 O -0.40 -16.92 10.33 -148.98 -1.54 -18.45 16 11 C 0.04 1.29 6.26 71.98 0.45 1.74 16 12 C 0.12 2.32 6.49 86.38 0.56 2.88 16 13 N -0.44 -9.04 2.72 -528.35 -1.44 -10.48 16 14 C 0.20 4.07 12.55 180.10 2.26 6.33 16 15 N -0.48 -12.66 11.33 -188.86 -2.14 -14.80 16 16 C -0.09 -2.39 7.01 40.47 0.28 -2.10 16 17 C 0.58 15.01 8.33 70.17 0.58 15.60 16 18 O -0.55 -16.05 17.67 19.66 0.35 -15.71 16 19 O -0.50 -10.35 13.44 -56.97 -0.77 -11.12 16 20 C 0.06 1.33 11.26 83.75 0.94 2.27 16 21 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 22 H -0.01 -0.71 8.14 -2.38 -0.02 -0.73 16 23 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 24 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.05 1.49 8.14 -2.39 -0.02 1.48 16 26 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.25 2.95 8.06 -2.91 -0.02 2.93 16 29 H 0.43 4.14 9.11 -74.06 -0.67 3.46 16 30 H 0.21 3.85 8.06 -2.91 -0.02 3.83 16 Total: -1.00 -73.13 282.32 3.46 -69.67 By element: Atomic # 1 Polarization: 1.59 SS G_CDS: 0.49 Total: 2.08 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: 6.19 Total: 8.32 kcal Atomic # 7 Polarization: -75.89 SS G_CDS: -3.29 Total: -79.19 kcal Atomic # 8 Polarization: -43.32 SS G_CDS: -1.96 Total: -45.28 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -73.13 3.46 -69.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385827561.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.493 kcal (2) G-P(sol) polarization free energy of solvation -73.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds