Wall clock time and date at job start Mon Mar 30 2020 04:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00042 * 2 1 4 4 H 1.48501 * 109.47103 * 269.99910 * 3 2 1 5 5 H 1.48494 * 109.47115 * 29.99945 * 3 2 1 6 6 H 1.48501 * 109.47078 * 150.00486 * 3 2 1 7 7 C 1.37876 * 120.00109 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00207 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99901 * 359.97438 * 7 2 1 10 10 O 1.42902 * 109.47487 * 179.97438 * 9 7 2 11 11 C 1.42893 * 114.00096 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46931 * 180.02562 * 11 10 9 13 13 N 1.46500 * 109.47205 * 65.00242 * 12 11 10 14 14 N 1.39966 * 119.89206 * 269.99771 * 13 12 11 15 15 C 1.30941 * 120.75003 * 180.02562 * 14 13 12 16 16 O 1.35819 * 119.75394 * 180.02562 * 15 14 13 17 17 C 1.40725 * 120.49855 * 0.02562 * 15 14 13 18 18 C 1.36006 * 119.74016 * 359.97438 * 17 15 14 19 19 C 1.34822 * 119.89894 * 90.02152 * 13 12 11 20 20 O 1.22097 * 120.24031 * 359.95520 * 19 13 12 21 21 H 0.97002 * 119.99903 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.47002 * 60.00096 * 9 7 2 23 23 H 1.08997 * 109.47190 * 300.00256 * 9 7 2 24 24 H 1.09000 * 109.47355 * 60.00124 * 11 10 9 25 25 H 1.08998 * 109.47493 * 299.99926 * 11 10 9 26 26 H 1.08999 * 109.47496 * 304.99812 * 12 11 10 27 27 H 1.09004 * 109.47120 * 184.99698 * 12 11 10 28 28 H 0.96698 * 113.99906 * 0.02562 * 16 15 14 29 29 H 1.07998 * 120.13289 * 179.69891 * 17 15 14 30 30 H 1.08002 * 120.35890 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0017 10 8 2.1796 -3.5854 0.0015 11 6 1.5650 -4.8754 0.0019 12 6 2.6480 -5.9562 0.0023 13 7 3.4060 -5.8876 1.2541 14 7 4.5438 -5.0767 1.3370 15 6 5.2341 -5.0032 2.4473 16 8 6.3346 -4.2095 2.5054 17 6 4.8442 -5.7405 3.5807 18 6 3.7418 -6.5349 3.5225 19 6 3.0057 -6.6061 2.3223 20 8 2.0130 -7.3133 2.2508 21 1 -0.4850 0.8401 0.0004 22 1 0.6240 -2.5575 -0.8881 23 1 0.6247 -2.5563 0.8919 24 1 0.9445 -4.9826 -0.8878 25 1 0.9452 -4.9823 0.8922 26 1 3.3215 -5.7960 -0.8396 27 1 2.1819 -6.9375 -0.0869 28 1 6.5259 -3.7413 1.6812 29 1 5.4206 -5.6792 4.4920 30 1 3.4338 -7.1053 4.3863 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395328438.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:58 Heat of formation + Delta-G solvation = -56.462474 kcal Electronic energy + Delta-G solvation = -16913.001374 eV Core-core repulsion = 13903.665530 eV Total energy + Delta-G solvation = -3009.335844 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.094 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.95595 -38.60073 -36.89424 -36.10696 -34.15657 -32.70023 -31.15065 -29.15554 -26.99328 -25.14184 -23.40736 -22.39416 -21.79177 -19.45659 -18.01738 -16.61171 -16.50170 -16.25705 -15.74050 -15.42486 -14.74612 -14.37592 -14.27763 -14.17215 -13.80296 -13.38552 -13.19746 -12.30016 -12.20136 -11.42305 -11.39485 -11.22942 -10.86957 -10.83615 -10.71695 -10.24018 -9.98220 -9.68276 -9.13453 -8.86406 -8.29289 -8.20259 -6.12862 -4.14790 0.40564 1.89882 2.12216 3.27976 3.32945 3.37536 3.38746 3.41919 4.18115 4.32700 4.67906 4.80834 4.82986 5.23484 5.36605 5.44029 5.48431 5.60658 5.74680 5.85770 5.96849 6.14835 6.32864 7.06995 7.15583 7.40033 7.71517 7.76932 8.00439 8.12492 8.53418 8.97937 9.49910 10.98770 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.025181 B = 0.006541 C = 0.005620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.684341 B = 4279.474765 C = 4980.796666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.908 3.092 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.513 4.513 8 H 0.066 0.934 9 C 0.195 3.805 10 O -0.386 6.386 11 C 0.045 3.955 12 C 0.132 3.868 13 N -0.373 5.373 14 N -0.264 5.264 15 C 0.287 3.713 16 O -0.455 6.455 17 C -0.076 4.076 18 C -0.148 4.148 19 C 0.490 3.510 20 O -0.546 6.546 21 H 0.264 0.736 22 H 0.005 0.995 23 H 0.002 0.998 24 H 0.057 0.943 25 H 0.043 0.957 26 H 0.101 0.899 27 H 0.109 0.891 28 H 0.413 0.587 29 H 0.154 0.846 30 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.285 -11.669 4.646 16.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.551 4.551 8 H 0.084 0.916 9 C 0.121 3.879 10 O -0.306 6.306 11 C -0.033 4.033 12 C 0.011 3.989 13 N -0.196 5.196 14 N -0.098 5.098 15 C 0.071 3.929 16 O -0.250 6.250 17 C -0.100 4.100 18 C -0.177 4.177 19 C 0.285 3.715 20 O -0.426 6.426 21 H 0.074 0.926 22 H 0.023 0.977 23 H 0.020 0.980 24 H 0.075 0.925 25 H 0.061 0.939 26 H 0.119 0.881 27 H 0.127 0.873 28 H 0.269 0.731 29 H 0.172 0.828 30 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 9.866 -11.730 4.325 15.926 hybrid contribution 0.024 1.015 0.262 1.048 sum 9.890 -10.715 4.587 15.286 Atomic orbital electron populations 1.69965 1.06126 1.27178 1.50487 1.24959 0.94975 0.99448 0.95171 0.86336 0.79626 0.82274 0.78241 1.20416 1.21073 1.19665 1.21020 0.93984 0.89268 1.50838 0.91584 1.20200 0.88780 0.83631 0.95302 1.87917 1.35010 1.12451 1.95203 1.22618 0.94161 0.86143 1.00426 1.21888 0.93662 0.99817 0.83492 1.49061 1.20805 1.36135 1.13574 1.75235 0.98847 1.12863 1.22899 1.20144 0.88747 0.93048 0.90982 1.85139 1.39503 1.58269 1.42070 1.21392 0.96604 0.93696 0.98346 1.22602 0.95201 1.00743 0.99185 1.17630 0.86831 0.82141 0.84910 1.90984 1.26685 1.41550 1.83339 0.92628 0.97674 0.97983 0.92455 0.93913 0.88094 0.87294 0.73138 0.82817 0.81513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.14 13.29 55.43 0.74 -26.41 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.51 -15.16 9.43 -34.44 -0.32 -15.49 16 8 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 9 C 0.20 5.43 5.69 36.01 0.20 5.64 16 10 O -0.39 -9.35 10.27 -35.23 -0.36 -9.71 16 11 C 0.05 0.87 6.28 37.16 0.23 1.10 16 12 C 0.13 2.08 6.09 -4.04 -0.02 2.05 16 13 N -0.37 -6.18 3.46 -63.34 -0.22 -6.40 16 14 N -0.26 -4.18 11.46 30.59 0.35 -3.83 16 15 C 0.29 3.75 7.95 -16.99 -0.14 3.62 16 16 O -0.45 -4.95 13.58 -19.17 -0.26 -5.21 16 17 C -0.08 -0.83 10.00 -39.44 -0.39 -1.22 16 18 C -0.15 -1.79 10.01 -39.35 -0.39 -2.19 16 19 C 0.49 7.93 7.50 -15.20 -0.11 7.82 16 20 O -0.55 -10.18 16.71 4.83 0.08 -10.10 16 21 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 22 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 23 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 24 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.10 1.45 8.14 -51.93 -0.42 1.02 16 27 H 0.11 1.49 7.42 -51.93 -0.39 1.11 16 28 H 0.41 3.34 8.97 45.56 0.41 3.75 16 29 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 30 H 0.17 1.51 8.06 -52.49 -0.42 1.08 16 LS Contribution 277.37 15.07 4.18 4.18 Total: -1.00 -35.52 277.37 -4.04 -39.56 By element: Atomic # 1 Polarization: 0.73 SS G_CDS: -2.48 Total: -1.75 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: -1.05 Total: 2.85 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.87 Total: -36.63 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -0.54 Total: -25.03 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -35.52 -4.04 -39.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395328438.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.899 kcal (2) G-P(sol) polarization free energy of solvation -35.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds