Wall clock time and date at job start Mon Mar 30 2020 04:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00042 * 2 1 4 4 H 1.48501 * 109.47103 * 269.99910 * 3 2 1 5 5 H 1.48494 * 109.47115 * 29.99945 * 3 2 1 6 6 H 1.48501 * 109.47078 * 150.00486 * 3 2 1 7 7 C 1.37876 * 120.00109 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00207 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99901 * 359.97438 * 7 2 1 10 10 O 1.42902 * 109.47487 * 179.97438 * 9 7 2 11 11 C 1.42893 * 114.00096 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46931 * 180.02562 * 11 10 9 13 13 N 1.46500 * 109.47205 * 65.00242 * 12 11 10 14 14 N 1.39966 * 119.89206 * 269.99771 * 13 12 11 15 15 C 1.30941 * 120.75003 * 180.02562 * 14 13 12 16 16 O 1.35819 * 119.75394 * 180.02562 * 15 14 13 17 17 C 1.40725 * 120.49855 * 0.02562 * 15 14 13 18 18 C 1.36006 * 119.74016 * 359.97438 * 17 15 14 19 19 C 1.34822 * 119.89894 * 90.02152 * 13 12 11 20 20 O 1.22097 * 120.24031 * 359.95520 * 19 13 12 21 21 H 0.97002 * 119.99903 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.47002 * 60.00096 * 9 7 2 23 23 H 1.08997 * 109.47190 * 300.00256 * 9 7 2 24 24 H 1.09000 * 109.47355 * 60.00124 * 11 10 9 25 25 H 1.08998 * 109.47493 * 299.99926 * 11 10 9 26 26 H 1.08999 * 109.47496 * 304.99812 * 12 11 10 27 27 H 1.09004 * 109.47120 * 184.99698 * 12 11 10 28 28 H 0.96698 * 113.99906 * 0.02562 * 16 15 14 29 29 H 1.07998 * 120.13289 * 179.69891 * 17 15 14 30 30 H 1.08002 * 120.35890 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0017 10 8 2.1796 -3.5854 0.0015 11 6 1.5650 -4.8754 0.0019 12 6 2.6480 -5.9562 0.0023 13 7 3.4060 -5.8876 1.2541 14 7 4.5438 -5.0767 1.3370 15 6 5.2341 -5.0032 2.4473 16 8 6.3346 -4.2095 2.5054 17 6 4.8442 -5.7405 3.5807 18 6 3.7418 -6.5349 3.5225 19 6 3.0057 -6.6061 2.3223 20 8 2.0130 -7.3133 2.2508 21 1 -0.4850 0.8401 0.0004 22 1 0.6240 -2.5575 -0.8881 23 1 0.6247 -2.5563 0.8919 24 1 0.9445 -4.9826 -0.8878 25 1 0.9452 -4.9823 0.8922 26 1 3.3215 -5.7960 -0.8396 27 1 2.1819 -6.9375 -0.0869 28 1 6.5259 -3.7413 1.6812 29 1 5.4206 -5.6792 4.4920 30 1 3.4338 -7.1053 4.3863 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395328438.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:56 Heat of formation + Delta-G solvation = -86.867261 kcal Electronic energy + Delta-G solvation = -16914.319825 eV Core-core repulsion = 13903.665530 eV Total energy + Delta-G solvation = -3010.654294 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.094 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -42.07871 -39.65900 -38.69220 -37.28059 -35.45387 -34.75694 -32.34658 -30.61856 -29.00510 -26.31803 -24.63180 -24.50324 -23.13526 -20.47417 -19.12858 -18.65746 -17.82966 -17.52134 -17.30187 -16.91741 -16.44880 -16.04289 -15.44047 -15.38422 -15.06270 -14.72771 -14.35293 -14.06463 -13.72874 -13.23976 -12.95061 -12.81662 -12.61958 -12.36978 -12.28403 -11.98935 -11.32810 -11.13693 -10.95798 -10.81665 -10.30935 -9.48782 -8.34794 -6.47913 -0.57466 0.81329 0.99866 1.38418 1.41767 1.53543 2.30440 2.34015 2.44366 2.99151 3.03253 3.28060 3.82023 3.89070 4.03713 4.04622 4.35962 4.46959 4.58284 4.63191 4.80186 4.83324 4.88142 5.07575 5.12407 5.51402 5.91353 6.23644 6.46085 6.61122 6.75634 6.86484 7.23986 8.77870 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.025181 B = 0.006541 C = 0.005620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.684341 B = 4279.474765 C = 4980.796666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.004 3.996 3 Si 0.986 3.014 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.065 0.935 9 C 0.210 3.790 10 O -0.392 6.392 11 C 0.040 3.960 12 C 0.138 3.862 13 N -0.386 5.386 14 N -0.305 5.305 15 C 0.295 3.705 16 O -0.447 6.447 17 C -0.062 4.062 18 C -0.152 4.152 19 C 0.476 3.524 20 O -0.583 6.583 21 H 0.271 0.729 22 H -0.012 1.012 23 H -0.026 1.026 24 H 0.073 0.927 25 H 0.025 0.975 26 H 0.114 0.886 27 H 0.129 0.871 28 H 0.425 0.575 29 H 0.199 0.801 30 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.243 -11.059 5.540 17.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.194 4.194 3 Si 0.808 3.192 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.582 4.582 8 H 0.083 0.917 9 C 0.134 3.866 10 O -0.312 6.312 11 C -0.038 4.038 12 C 0.017 3.983 13 N -0.208 5.208 14 N -0.140 5.140 15 C 0.079 3.921 16 O -0.243 6.243 17 C -0.086 4.086 18 C -0.180 4.180 19 C 0.272 3.728 20 O -0.466 6.466 21 H 0.080 0.920 22 H 0.006 0.994 23 H -0.008 1.008 24 H 0.091 0.909 25 H 0.043 0.957 26 H 0.133 0.867 27 H 0.146 0.854 28 H 0.283 0.717 29 H 0.216 0.784 30 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 11.858 -11.127 5.216 17.077 hybrid contribution -0.539 0.788 0.009 0.955 sum 11.318 -10.339 5.225 16.196 Atomic orbital electron populations 1.70085 1.07939 1.28714 1.50499 1.26022 0.95954 1.03580 0.93855 0.85147 0.78372 0.76725 0.78958 1.19078 1.20108 1.18566 1.21338 0.94123 0.90485 1.52231 0.91715 1.19819 0.88676 0.84965 0.93094 1.87881 1.34615 1.13532 1.95146 1.22878 0.95699 0.84904 1.00318 1.21853 0.93036 0.99054 0.84339 1.49093 1.21308 1.36602 1.13777 1.75204 0.99566 1.14445 1.24830 1.20607 0.88265 0.92246 0.91017 1.85147 1.38430 1.57788 1.42965 1.21788 0.96031 0.91756 0.98978 1.22826 0.95179 1.01604 0.98382 1.18316 0.86844 0.81633 0.85978 1.90951 1.28353 1.43190 1.84065 0.92034 0.99382 1.00810 0.90859 0.95709 0.86744 0.85359 0.71734 0.78436 0.78465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.88 13.29 21.45 0.28 -56.59 16 2 C 0.00 0.24 5.46 84.65 0.46 0.70 16 3 Si 0.99 44.20 29.54 68.60 2.03 46.22 16 4 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 7 C -0.54 -32.61 9.43 25.60 0.24 -32.37 16 8 H 0.06 3.80 7.81 -2.91 -0.02 3.78 16 9 C 0.21 12.09 5.69 71.24 0.41 12.49 16 10 O -0.39 -19.47 10.27 -148.98 -1.53 -21.00 16 11 C 0.04 1.58 6.28 71.98 0.45 2.03 16 12 C 0.14 4.35 6.09 86.38 0.53 4.88 16 13 N -0.39 -12.73 3.46 -472.32 -1.63 -14.36 16 14 N -0.30 -9.44 11.46 -170.57 -1.96 -11.39 16 15 C 0.29 7.11 7.95 85.43 0.68 7.79 16 16 O -0.45 -8.60 13.58 -91.52 -1.24 -9.84 16 17 C -0.06 -1.15 10.00 22.36 0.22 -0.93 16 18 C -0.15 -3.36 10.01 22.42 0.22 -3.13 16 19 C 0.48 15.23 7.50 84.90 0.64 15.86 16 20 O -0.58 -21.96 16.71 -5.63 -0.09 -22.05 16 21 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 22 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 23 H -0.03 -1.60 8.14 -2.39 -0.02 -1.62 16 24 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 25 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 27 H 0.13 3.51 7.42 -2.38 -0.02 3.49 16 28 H 0.42 6.05 8.97 -74.06 -0.66 5.38 16 29 H 0.20 1.90 8.06 -2.91 -0.02 1.87 16 30 H 0.20 3.00 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -77.70 277.37 0.21 -77.49 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: 0.50 Total: 4.19 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: 3.85 Total: 7.33 kcal Atomic # 7 Polarization: -79.04 SS G_CDS: -3.30 Total: -82.34 kcal Atomic # 8 Polarization: -50.03 SS G_CDS: -2.87 Total: -52.89 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -77.70 0.21 -77.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395328438.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.376 kcal (2) G-P(sol) polarization free energy of solvation -77.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds