Wall clock time and date at job start Mon Mar 30 2020 03:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00352 * 2 1 4 4 H 1.48493 * 109.47209 * 269.99889 * 3 2 1 5 5 H 1.48507 * 109.46943 * 29.99994 * 3 2 1 6 6 H 1.48496 * 109.47348 * 149.99558 * 3 2 1 7 7 C 1.37884 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00176 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99762 * 0.02562 * 7 2 1 10 10 O 1.42907 * 109.46942 * 180.02562 * 9 7 2 11 11 C 1.42903 * 113.99838 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46726 * 179.97438 * 11 10 9 13 13 S 1.81002 * 109.47004 * 180.02562 * 12 11 10 14 14 C 1.76193 * 100.00049 * 180.02562 * 13 12 11 15 15 C 1.39741 * 120.53849 * 180.02562 * 14 13 12 16 16 C 1.38039 * 118.32747 * 180.02562 * 15 14 13 17 17 N 1.32602 * 119.21104 * 0.02562 * 16 15 14 18 18 C 1.31777 * 121.02653 * 359.97438 * 17 16 15 19 19 N 1.31762 * 121.83301 * 359.72729 * 18 17 16 20 20 H 0.97000 * 119.99632 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.47569 * 60.00186 * 9 7 2 22 22 H 1.08996 * 109.47305 * 299.99830 * 9 7 2 23 23 H 1.09001 * 109.46938 * 60.00058 * 11 10 9 24 24 H 1.08992 * 109.47388 * 300.00049 * 11 10 9 25 25 H 1.09002 * 109.47398 * 300.00244 * 12 11 10 26 26 H 1.09001 * 109.47194 * 60.00425 * 12 11 10 27 27 H 1.08000 * 120.83656 * 0.02562 * 15 14 13 28 28 H 1.08004 * 120.39373 * 180.02562 * 16 15 14 29 29 H 1.07989 * 119.08229 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 2.1796 -3.5854 0.0017 11 6 1.5649 -4.8755 0.0013 12 6 2.6479 -5.9563 0.0020 13 16 1.8694 -7.5903 0.0006 14 6 3.3043 -8.6128 0.0025 15 6 3.1841 -10.0050 0.0016 16 6 4.3384 -10.7621 0.0037 17 7 5.5143 -10.1493 0.0070 18 6 5.5947 -8.8340 0.0078 19 7 4.5198 -8.0720 0.0001 20 1 -0.4849 0.8401 0.0004 21 1 0.6246 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8903 23 1 0.9458 -4.9826 -0.8894 24 1 0.9438 -4.9824 0.8905 25 1 3.2687 -5.8492 -0.8875 26 1 3.2674 -5.8493 0.8925 27 1 2.2126 -10.4768 -0.0007 28 1 4.2843 -11.8408 0.0026 29 1 6.5687 -8.3677 0.0101 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395356584.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:46 Heat of formation + Delta-G solvation = -27.494780 kcal Electronic energy + Delta-G solvation = -13718.573077 eV Core-core repulsion = 11153.246238 eV Total energy + Delta-G solvation = -2565.326839 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.78486 -38.78663 -35.06249 -34.78276 -33.11639 -32.55214 -29.20644 -25.97785 -25.46434 -24.61831 -23.79053 -19.49556 -18.67202 -18.48446 -17.76578 -17.13532 -16.65231 -16.42796 -16.21155 -15.96018 -15.28127 -14.83193 -14.63143 -14.37369 -13.79034 -13.09301 -12.96491 -12.64288 -12.61043 -12.17830 -12.12004 -12.03900 -11.72690 -11.32610 -11.04189 -10.93095 -10.34238 -10.34055 -8.94443 -8.34816 -6.47657 -0.25857 -0.00752 0.17888 0.85907 1.39928 1.42627 1.54830 2.33782 2.67917 2.99090 3.16008 3.23020 3.30790 3.70883 3.78949 3.95796 4.12537 4.28368 4.46733 4.58505 4.61530 4.69182 4.86436 5.11951 5.29666 5.51514 5.81474 5.90577 6.43534 6.74109 6.97207 7.23788 8.77368 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.057531 B = 0.003756 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.576962 B = 7452.434649 C = 7913.262539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.985 3.015 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.265 1.265 7 C -0.552 4.552 8 H 0.062 0.938 9 C 0.208 3.792 10 O -0.406 6.406 11 C 0.071 3.929 12 C -0.091 4.091 13 S -0.013 6.013 14 C 0.136 3.864 15 C -0.202 4.202 16 C 0.163 3.837 17 N -0.544 5.544 18 C 0.302 3.698 19 N -0.552 5.552 20 H 0.272 0.728 21 H -0.008 1.008 22 H -0.008 1.008 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.179 0.821 28 H 0.213 0.787 29 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.680 -21.094 0.003 21.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.192 4.192 3 Si 0.808 3.192 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.189 1.189 7 C -0.590 4.590 8 H 0.080 0.920 9 C 0.133 3.867 10 O -0.326 6.326 11 C -0.008 4.008 12 C -0.240 4.240 13 S 0.226 5.774 14 C -0.120 4.120 15 C -0.231 4.231 16 C -0.002 4.002 17 N -0.260 5.260 18 C 0.011 3.989 19 N -0.271 5.271 20 H 0.081 0.919 21 H 0.009 0.991 22 H 0.009 0.991 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.112 0.888 26 H 0.112 0.888 27 H 0.196 0.804 28 H 0.229 0.771 29 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 5.369 -20.711 0.000 21.395 hybrid contribution 0.362 0.895 -0.007 0.966 sum 5.731 -19.816 -0.007 20.628 Atomic orbital electron populations 1.70063 1.07708 1.28778 1.50179 1.25980 0.96027 1.03415 0.93796 0.85150 0.78319 0.76866 0.78875 1.19236 1.19777 1.18945 1.21376 0.94172 0.90738 1.52684 0.91965 1.19916 0.88586 0.84188 0.94021 1.87817 1.35638 1.13857 1.95325 1.22100 0.94222 0.83480 1.00973 1.23199 1.00654 0.92724 1.07379 1.85517 1.04296 0.97819 1.89724 1.23866 0.96606 0.96161 0.95386 1.22815 1.03753 0.92111 1.04457 1.23826 0.86080 1.02770 0.87521 1.68561 1.29764 1.12053 1.15657 1.25427 0.97781 0.86560 0.89098 1.68847 0.99003 1.41735 1.17555 0.91923 0.99058 0.99059 0.92764 0.92753 0.88757 0.88758 0.80352 0.77051 0.76650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.66 13.29 21.45 0.28 -55.38 15 2 C 0.01 0.38 5.46 84.66 0.46 0.85 15 3 Si 0.99 44.40 29.54 68.60 2.03 46.43 15 4 H -0.27 -11.53 7.11 99.48 0.71 -10.83 15 5 H -0.27 -11.70 7.11 99.48 0.71 -11.00 15 6 H -0.27 -11.61 7.11 99.48 0.71 -10.90 15 7 C -0.55 -33.14 9.43 25.60 0.24 -32.89 15 8 H 0.06 3.70 7.81 -2.91 -0.02 3.68 15 9 C 0.21 11.78 5.69 71.23 0.41 12.18 15 10 O -0.41 -20.20 10.33 -148.98 -1.54 -21.73 15 11 C 0.07 2.67 5.94 71.98 0.43 3.09 15 12 C -0.09 -2.87 5.24 71.98 0.38 -2.49 15 13 S -0.01 -0.32 22.09 -56.49 -1.25 -1.57 15 14 C 0.14 3.18 7.01 84.87 0.59 3.78 15 15 C -0.20 -3.27 9.95 22.59 0.22 -3.05 15 16 C 0.16 2.34 11.29 84.53 0.95 3.29 15 17 N -0.54 -10.62 10.43 -200.34 -2.09 -12.72 15 18 C 0.30 6.42 12.28 180.90 2.22 8.65 15 19 N -0.55 -14.22 9.31 -196.18 -1.83 -16.04 15 20 H 0.27 15.06 8.31 -92.71 -0.77 14.29 15 21 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 15 22 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 15 23 H 0.05 1.96 8.14 -2.39 -0.02 1.94 15 24 H 0.05 1.97 8.14 -2.39 -0.02 1.95 15 25 H 0.09 3.09 8.14 -2.39 -0.02 3.07 15 26 H 0.09 3.09 8.14 -2.39 -0.02 3.07 15 27 H 0.18 1.79 8.06 -2.91 -0.02 1.76 15 28 H 0.21 1.13 8.06 -2.91 -0.02 1.10 15 29 H 0.22 3.37 8.06 -2.92 -0.02 3.35 15 Total: -1.00 -69.80 277.73 2.66 -67.14 By element: Atomic # 1 Polarization: -0.67 SS G_CDS: 1.14 Total: 0.47 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: 5.91 Total: -6.59 kcal Atomic # 7 Polarization: -80.51 SS G_CDS: -3.63 Total: -84.14 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -1.54 Total: -21.73 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Atomic # 16 Polarization: -0.32 SS G_CDS: -1.25 Total: -1.57 kcal Total: -69.80 2.66 -67.14 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395356584.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.643 kcal (2) G-P(sol) polarization free energy of solvation -69.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds