Wall clock time and date at job start Mon Mar 30 2020 04:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 N 1.65595 * 108.33368 * 2 1 4 4 O 1.42101 * 114.64621 * 121.10767 * 2 1 3 5 5 N 1.49354 * 108.32911 * 242.21054 * 2 1 3 6 6 C 1.31473 * 119.99394 * 180.02562 * 5 2 1 7 7 C 1.46753 * 120.02449 * 180.02562 * 6 5 2 8 8 C 1.34669 * 119.97196 * 179.97438 * 7 6 5 9 9 C 1.46521 * 120.02840 * 0.25550 * 8 7 6 10 10 C 1.38513 * 119.96999 * 179.72141 * 9 8 7 11 11 H 1.07998 * 120.00360 * 24.59585 * 10 9 8 12 12 C 1.41650 * 119.99801 * 204.58522 * 10 9 8 13 13 N 1.29893 * 119.99833 * 17.56891 * 12 10 9 14 14 Si 1.86799 * 120.00275 * 197.57086 * 12 10 9 15 15 H 1.48502 * 109.46598 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47145 * 119.99875 * 14 12 10 17 17 H 1.48496 * 109.47199 * 240.00521 * 14 12 10 18 18 C 1.46515 * 120.05288 * 359.48810 * 9 8 7 19 19 C 1.34676 * 120.03069 * 0.51149 * 18 9 8 20 20 H 1.08996 * 109.47627 * 177.79246 * 1 2 3 21 21 H 1.09009 * 109.46867 * 297.79249 * 1 2 3 22 22 H 1.08999 * 109.46757 * 57.78505 * 1 2 3 23 23 H 0.97005 * 120.00266 * 304.93507 * 3 2 1 24 24 H 0.96999 * 120.00512 * 124.93482 * 3 2 1 25 25 H 1.08003 * 120.01287 * 359.95259 * 7 6 5 26 26 H 1.07999 * 119.99115 * 179.97438 * 8 7 6 27 27 H 0.97007 * 120.00016 * 180.02562 * 13 12 10 28 28 H 1.08003 * 119.98250 * 180.23444 * 18 9 8 29 29 H 1.07999 * 120.01635 * 179.72184 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 7 2.3349 1.5719 0.0000 4 8 2.4066 -0.6673 1.1058 5 7 2.2837 -0.6610 -1.2542 6 6 3.5713 -0.7854 -1.4892 7 6 4.0335 -1.4342 -2.7216 8 6 5.3527 -1.5606 -2.9614 9 6 6.3262 -1.0556 -1.9898 10 6 7.6827 -1.1914 -2.2350 11 1 8.0414 -1.2861 -3.2493 12 6 8.5996 -1.2059 -1.1554 13 7 8.1780 -1.4350 0.0517 14 14 10.4150 -0.8954 -1.4674 15 1 10.6350 -0.6617 -2.9173 16 1 10.8514 0.3000 -0.7020 17 1 11.2014 -2.0770 -1.0311 18 6 5.8661 -0.4026 -0.7616 19 6 4.5474 -0.2750 -0.5195 20 1 -0.3634 -1.0268 -0.0396 21 1 -0.3633 0.4792 0.9092 22 1 -0.3633 0.5479 -0.8695 23 1 2.0309 2.1837 -0.6887 24 1 2.9441 1.8810 0.6886 25 1 3.3161 -1.8106 -3.4359 26 1 5.6932 -2.0385 -3.8681 27 1 8.8058 -1.4445 0.7911 28 1 6.5847 -0.0274 -0.0480 29 1 4.2085 0.2024 0.3880 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404508332.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:09 Heat of formation + Delta-G solvation = 38.667101 kcal Electronic energy + Delta-G solvation = -14903.858855 eV Core-core repulsion = 12341.401010 eV Total energy + Delta-G solvation = -2562.457845 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 5.30 seconds Orbital eigenvalues (eV) -37.06994 -35.44011 -34.62927 -32.61945 -31.90138 -29.50420 -28.90557 -28.41249 -24.08809 -20.94060 -20.54936 -17.83418 -17.49133 -16.80663 -16.21637 -15.65065 -15.14793 -14.36480 -13.98840 -13.16936 -12.99783 -12.79187 -12.58008 -12.15404 -12.02388 -11.57005 -11.37928 -11.18008 -11.10983 -10.85987 -10.48602 -10.14034 -9.75367 -9.57550 -9.28680 -8.97023 -8.17916 -7.64973 -7.16885 -6.38092 -3.87413 0.49117 2.63161 2.90524 2.96413 3.09895 3.33939 3.66640 3.74707 4.30385 4.65413 4.88048 5.27406 5.38677 5.64050 5.96019 6.19105 6.38891 6.64059 6.75484 6.84461 6.88199 7.17658 7.46467 7.60889 7.92860 7.95001 7.98497 8.14378 8.32985 8.54606 8.62773 9.07424 9.74365 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.048788 B = 0.006401 C = 0.005971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.773554 B = 4373.056901 C = 4688.325821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.595 4.595 2 S 2.317 3.683 3 N -1.281 6.281 4 O -0.965 6.965 5 N -1.009 6.009 6 C 0.057 3.943 7 C -0.054 4.054 8 C -0.221 4.221 9 C 0.100 3.900 10 C -0.394 4.394 11 H 0.091 0.909 12 C 0.066 3.934 13 N -0.739 5.739 14 Si 0.916 3.084 15 H -0.254 1.254 16 H -0.267 1.267 17 H -0.269 1.269 18 C -0.153 4.153 19 C -0.150 4.150 20 H 0.109 0.891 21 H 0.102 0.898 22 H 0.115 0.885 23 H 0.393 0.607 24 H 0.383 0.617 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.292 0.708 28 H 0.115 0.885 29 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.800 4.944 -0.728 6.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.745 4.745 2 S 2.439 3.561 3 N -0.929 5.929 4 O -0.946 6.946 5 N -0.894 5.894 6 C -0.068 4.068 7 C -0.082 4.082 8 C -0.245 4.245 9 C 0.093 3.907 10 C -0.426 4.426 11 H 0.109 0.891 12 C -0.160 4.160 13 N -0.361 5.361 14 Si 0.739 3.261 15 H -0.177 1.177 16 H -0.192 1.192 17 H -0.194 1.194 18 C -0.176 4.176 19 C -0.177 4.177 20 H 0.128 0.872 21 H 0.121 0.879 22 H 0.134 0.866 23 H 0.216 0.784 24 H 0.206 0.794 25 H 0.117 0.883 26 H 0.117 0.883 27 H 0.104 0.896 28 H 0.133 0.867 29 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.555 4.318 0.127 7.037 hybrid contribution 0.943 0.751 0.468 1.293 sum -4.613 5.069 0.595 6.879 Atomic orbital electron populations 1.29379 1.27614 1.09103 1.08428 1.24232 0.78505 0.76014 0.77318 1.55526 1.62624 1.35111 1.39684 1.93416 1.71176 1.71894 1.58082 1.69708 1.26052 1.34849 1.58822 1.18710 0.83672 1.08573 0.95864 1.21214 0.94358 1.00277 0.92341 1.21396 0.92647 1.09297 1.01141 1.19660 0.92269 0.87724 0.91043 1.19859 0.91720 1.36459 0.94516 0.89101 1.26470 1.02848 0.92345 0.94355 1.69448 1.38785 1.26814 1.01071 0.86113 0.80154 0.79204 0.80659 1.17703 1.19212 1.19427 1.21536 0.93746 1.03358 0.98958 1.22513 0.95253 1.03689 0.96262 0.87203 0.87913 0.86640 0.78376 0.79356 0.88301 0.88259 0.89575 0.86726 0.88348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.60 -7.83 11.06 101.05 1.12 -6.71 15 2 S 2.32 42.64 4.87 -107.50 -0.52 42.12 15 3 N -1.28 -19.82 8.47 60.35 0.51 -19.31 15 4 O -0.96 -22.78 15.97 -35.23 -0.56 -23.34 15 5 N -1.01 -22.23 10.24 33.69 0.34 -21.89 15 6 C 0.06 1.43 6.74 -81.14 -0.55 0.88 15 7 C -0.05 -1.31 10.16 -37.41 -0.38 -1.69 15 8 C -0.22 -5.37 9.92 -37.51 -0.37 -5.74 15 9 C 0.10 2.59 5.83 -103.12 -0.60 1.99 15 10 C -0.39 -9.60 9.02 -38.18 -0.34 -9.95 15 11 H 0.09 2.05 7.93 -52.49 -0.42 1.64 15 12 C 0.07 1.50 5.17 -17.07 -0.09 1.42 15 13 N -0.74 -17.80 10.88 55.64 0.61 -17.19 15 14 Si 0.92 16.61 29.61 -169.99 -5.03 11.58 15 15 H -0.25 -4.52 7.11 56.52 0.40 -4.12 15 16 H -0.27 -4.79 7.11 56.52 0.40 -4.39 15 17 H -0.27 -4.82 7.11 56.52 0.40 -4.42 15 18 C -0.15 -4.04 8.74 -37.51 -0.33 -4.36 15 19 C -0.15 -3.87 8.34 -37.41 -0.31 -4.18 15 20 H 0.11 1.43 8.14 -51.93 -0.42 1.00 15 21 H 0.10 1.14 8.14 -51.92 -0.42 0.71 15 22 H 0.11 1.27 8.14 -51.92 -0.42 0.84 15 23 H 0.39 5.06 8.96 -34.47 -0.31 4.75 15 24 H 0.38 5.93 8.43 -34.47 -0.29 5.64 15 25 H 0.10 2.16 8.06 -52.48 -0.42 1.74 15 26 H 0.10 2.17 8.06 -52.49 -0.42 1.74 15 27 H 0.29 6.23 8.28 -40.82 -0.34 5.89 15 28 H 0.11 3.03 6.23 -52.48 -0.33 2.71 15 29 H 0.10 2.44 4.80 -52.49 -0.25 2.19 15 LS Contribution 261.47 15.07 3.94 3.94 Total: -1.00 -31.09 261.47 -5.41 -36.51 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -2.84 Total: 15.93 kcal Atomic # 6 Polarization: -26.49 SS G_CDS: -1.86 Total: -28.35 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: 1.46 Total: -58.39 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.56 Total: -23.34 kcal Atomic # 14 Polarization: 16.61 SS G_CDS: -5.03 Total: 11.58 kcal Atomic # 16 Polarization: 42.64 SS G_CDS: -0.52 Total: 42.12 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -31.09 -5.41 -36.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404508332.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.174 kcal (2) G-P(sol) polarization free energy of solvation -31.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.30 seconds