Wall clock time and date at job start Mon Mar 30 2020 04:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 N 1.65595 * 108.33368 * 2 1 4 4 O 1.42101 * 114.64621 * 121.10767 * 2 1 3 5 5 N 1.49354 * 108.32911 * 242.21054 * 2 1 3 6 6 C 1.31473 * 119.99394 * 180.02562 * 5 2 1 7 7 C 1.46753 * 120.02449 * 180.02562 * 6 5 2 8 8 C 1.34669 * 119.97196 * 179.97438 * 7 6 5 9 9 C 1.46521 * 120.02840 * 0.25550 * 8 7 6 10 10 C 1.38513 * 119.96999 * 179.72141 * 9 8 7 11 11 H 1.07998 * 120.00360 * 24.59585 * 10 9 8 12 12 C 1.41650 * 119.99801 * 204.58522 * 10 9 8 13 13 N 1.29893 * 119.99833 * 17.56891 * 12 10 9 14 14 Si 1.86799 * 120.00275 * 197.57086 * 12 10 9 15 15 H 1.48502 * 109.46598 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47145 * 119.99875 * 14 12 10 17 17 H 1.48496 * 109.47199 * 240.00521 * 14 12 10 18 18 C 1.46515 * 120.05288 * 359.48810 * 9 8 7 19 19 C 1.34676 * 120.03069 * 0.51149 * 18 9 8 20 20 H 1.08996 * 109.47627 * 177.79246 * 1 2 3 21 21 H 1.09009 * 109.46867 * 297.79249 * 1 2 3 22 22 H 1.08999 * 109.46757 * 57.78505 * 1 2 3 23 23 H 0.97005 * 120.00266 * 304.93507 * 3 2 1 24 24 H 0.96999 * 120.00512 * 124.93482 * 3 2 1 25 25 H 1.08003 * 120.01287 * 359.95259 * 7 6 5 26 26 H 1.07999 * 119.99115 * 179.97438 * 8 7 6 27 27 H 0.97007 * 120.00016 * 180.02562 * 13 12 10 28 28 H 1.08003 * 119.98250 * 180.23444 * 18 9 8 29 29 H 1.07999 * 120.01635 * 179.72184 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 7 2.3349 1.5719 0.0000 4 8 2.4066 -0.6673 1.1058 5 7 2.2837 -0.6610 -1.2542 6 6 3.5713 -0.7854 -1.4892 7 6 4.0335 -1.4342 -2.7216 8 6 5.3527 -1.5606 -2.9614 9 6 6.3262 -1.0556 -1.9898 10 6 7.6827 -1.1914 -2.2350 11 1 8.0414 -1.2861 -3.2493 12 6 8.5996 -1.2059 -1.1554 13 7 8.1780 -1.4350 0.0517 14 14 10.4150 -0.8954 -1.4674 15 1 10.6350 -0.6617 -2.9173 16 1 10.8514 0.3000 -0.7020 17 1 11.2014 -2.0770 -1.0311 18 6 5.8661 -0.4026 -0.7616 19 6 4.5474 -0.2750 -0.5195 20 1 -0.3634 -1.0268 -0.0396 21 1 -0.3633 0.4792 0.9092 22 1 -0.3633 0.5479 -0.8695 23 1 2.0309 2.1837 -0.6887 24 1 2.9441 1.8810 0.6886 25 1 3.3161 -1.8106 -3.4359 26 1 5.6932 -2.0385 -3.8681 27 1 8.8058 -1.4445 0.7911 28 1 6.5847 -0.0274 -0.0480 29 1 4.2085 0.2024 0.3880 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404508332.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:04 Heat of formation + Delta-G solvation = 11.450531 kcal Electronic energy + Delta-G solvation = -14905.039054 eV Core-core repulsion = 12341.401010 eV Total energy + Delta-G solvation = -2563.638044 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -38.80811 -37.30405 -36.25825 -34.30350 -33.79097 -31.28050 -30.51863 -29.99994 -25.84405 -22.69418 -22.37172 -19.77744 -19.16836 -18.54637 -17.94937 -17.28634 -16.84647 -16.07219 -15.64948 -14.89297 -14.42326 -14.12102 -14.07033 -13.91232 -13.65632 -13.36318 -13.00295 -12.83343 -12.79170 -12.43524 -12.19398 -11.78911 -11.44396 -11.25631 -11.07541 -10.71923 -9.91710 -9.44657 -8.69385 -8.16852 -5.76749 -1.00204 0.95500 1.36794 1.38925 1.51386 1.55417 2.08559 2.21964 2.63055 2.91930 3.35928 3.80743 4.06887 4.14132 4.30122 4.58224 4.82438 4.98667 5.01229 5.14532 5.31451 5.40208 5.74752 5.89249 6.11927 6.25067 6.39075 6.43416 6.61954 6.93224 6.96285 7.33716 8.32398 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.048788 B = 0.006401 C = 0.005971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.773554 B = 4373.056901 C = 4688.325821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.520 4.520 2 S 2.452 3.548 3 N -1.253 6.253 4 O -1.027 7.027 5 N -1.089 6.089 6 C 0.067 3.933 7 C -0.109 4.109 8 C -0.235 4.235 9 C 0.050 3.950 10 C -0.484 4.484 11 H 0.079 0.921 12 C 0.030 3.970 13 N -0.813 5.813 14 Si 0.988 3.012 15 H -0.254 1.254 16 H -0.262 1.262 17 H -0.264 1.264 18 C -0.174 4.174 19 C -0.203 4.203 20 H 0.152 0.848 21 H 0.168 0.832 22 H 0.172 0.828 23 H 0.422 0.578 24 H 0.409 0.591 25 H 0.111 0.889 26 H 0.100 0.900 27 H 0.291 0.709 28 H 0.095 0.905 29 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.488 7.894 1.546 15.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.682 4.682 2 S 2.564 3.436 3 N -0.914 5.914 4 O -1.007 7.007 5 N -0.984 5.984 6 C -0.040 4.040 7 C -0.135 4.135 8 C -0.255 4.255 9 C 0.046 3.954 10 C -0.513 4.513 11 H 0.097 0.903 12 C -0.187 4.187 13 N -0.438 5.438 14 Si 0.808 3.192 15 H -0.177 1.177 16 H -0.187 1.187 17 H -0.189 1.189 18 C -0.194 4.194 19 C -0.228 4.228 20 H 0.171 0.829 21 H 0.186 0.814 22 H 0.190 0.810 23 H 0.252 0.748 24 H 0.237 0.763 25 H 0.129 0.871 26 H 0.118 0.882 27 H 0.102 0.898 28 H 0.113 0.887 29 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.642 7.146 2.162 15.552 hybrid contribution 1.289 0.579 0.377 1.463 sum -12.353 7.725 2.539 14.790 Atomic orbital electron populations 1.29055 1.09398 1.14676 1.15072 1.11711 0.82901 0.74801 0.74185 1.53687 1.63474 1.32362 1.41927 1.93481 1.75736 1.71425 1.60066 1.69172 1.24835 1.53068 1.51286 1.18659 0.84444 1.05949 0.94982 1.21161 0.94228 1.03092 0.94982 1.21538 0.93166 1.09238 1.01596 1.19758 0.93302 0.90580 0.91804 1.19639 0.92215 1.44996 0.94484 0.90339 1.27168 1.06592 0.91222 0.93719 1.69525 1.39855 1.32460 1.01942 0.85087 0.74989 0.79012 0.80114 1.17719 1.18699 1.18861 1.21427 0.94043 1.04337 0.99614 1.22395 0.95194 1.07539 0.97676 0.82950 0.81434 0.80968 0.74837 0.76319 0.87068 0.88163 0.89799 0.88729 0.88074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.52 -5.15 11.06 113.37 1.25 -3.90 15 2 S 2.45 68.53 4.87 -56.49 -0.27 68.25 15 3 N -1.25 -27.83 8.47 37.02 0.31 -27.52 15 4 O -1.03 -42.31 15.97 -148.98 -2.38 -44.69 15 5 N -1.09 -43.20 10.24 -47.32 -0.48 -43.68 15 6 C 0.07 3.43 6.74 43.65 0.29 3.72 15 7 C -0.11 -5.73 10.16 23.68 0.24 -5.49 15 8 C -0.23 -13.14 9.92 23.61 0.23 -12.91 15 9 C 0.05 3.01 5.83 -18.89 -0.11 2.90 15 10 C -0.48 -28.22 9.02 23.18 0.21 -28.01 15 11 H 0.08 4.36 7.93 -2.91 -0.02 4.34 15 12 C 0.03 1.63 5.17 85.82 0.44 2.07 15 13 N -0.81 -45.90 10.88 22.12 0.24 -45.66 15 14 Si 0.99 39.91 29.61 68.60 2.03 41.95 15 15 H -0.25 -9.94 7.11 99.48 0.71 -9.23 15 16 H -0.26 -10.08 7.11 99.48 0.71 -9.37 15 17 H -0.26 -10.13 7.11 99.48 0.71 -9.42 15 18 C -0.17 -10.43 8.74 23.61 0.21 -10.23 15 19 C -0.20 -11.05 8.34 23.68 0.20 -10.85 15 20 H 0.15 1.40 8.14 -2.39 -0.02 1.38 15 21 H 0.17 0.52 8.14 -2.39 -0.02 0.50 15 22 H 0.17 0.64 8.14 -2.39 -0.02 0.62 15 23 H 0.42 6.64 8.96 -96.74 -0.87 5.78 15 24 H 0.41 9.54 8.43 -96.75 -0.82 8.73 15 25 H 0.11 5.22 8.06 -2.91 -0.02 5.20 15 26 H 0.10 5.20 8.06 -2.91 -0.02 5.18 15 27 H 0.29 14.63 8.28 -92.70 -0.77 13.86 15 28 H 0.09 5.83 6.23 -2.91 -0.02 5.81 15 29 H 0.10 5.06 4.80 -2.91 -0.01 5.05 15 Total: -1.00 -87.57 261.47 1.93 -85.64 By element: Atomic # 1 Polarization: 28.89 SS G_CDS: -0.49 Total: 28.40 kcal Atomic # 6 Polarization: -65.66 SS G_CDS: 2.97 Total: -62.70 kcal Atomic # 7 Polarization: -116.93 SS G_CDS: 0.07 Total: -116.86 kcal Atomic # 8 Polarization: -42.31 SS G_CDS: -2.38 Total: -44.69 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 2.03 Total: 41.95 kcal Atomic # 16 Polarization: 68.53 SS G_CDS: -0.27 Total: 68.25 kcal Total: -87.57 1.93 -85.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404508332.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.094 kcal (2) G-P(sol) polarization free energy of solvation -87.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds