Wall clock time and date at job start Mon Mar 30 2020 04:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 N 1.65605 * 108.33253 * 2 1 4 4 O 1.42095 * 114.64988 * 121.10608 * 2 1 3 5 5 N 1.49352 * 108.33141 * 242.21191 * 2 1 3 6 6 C 1.34255 * 120.00146 * 180.02562 * 5 2 1 7 7 C 1.41246 * 120.08103 * 359.97438 * 6 5 2 8 8 C 1.38235 * 120.32365 * 180.02562 * 7 6 5 9 9 C 1.37773 * 120.49803 * 0.02562 * 8 7 6 10 10 C 1.41660 * 120.15507 * 0.02562 * 9 8 7 11 11 C 1.40451 * 120.16118 * 179.97438 * 10 9 8 12 12 H 1.07993 * 119.99972 * 25.24742 * 11 10 9 13 13 C 1.46271 * 119.99712 * 205.25433 * 11 10 9 14 14 N 1.29664 * 120.00431 * 12.41140 * 13 11 10 15 15 Si 1.86798 * 119.99807 * 192.41971 * 13 11 10 16 16 H 1.48502 * 109.47574 * 59.99778 * 15 13 11 17 17 H 1.48499 * 109.47270 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47177 * 299.99666 * 15 13 11 19 19 C 1.39595 * 120.08612 * 179.72845 * 6 5 2 20 20 H 1.09004 * 109.46971 * 57.78635 * 1 2 3 21 21 H 1.08994 * 109.47252 * 177.78559 * 1 2 3 22 22 H 1.09001 * 109.46870 * 297.79194 * 1 2 3 23 23 H 0.96998 * 119.99290 * 124.94028 * 3 2 1 24 24 H 0.96997 * 120.00076 * 304.65550 * 3 2 1 25 25 H 1.07997 * 119.84447 * 0.02613 * 7 6 5 26 26 H 1.08000 * 119.75284 * 180.02562 * 8 7 6 27 27 H 1.07998 * 119.92024 * 180.02562 * 9 8 7 28 28 H 0.97000 * 120.00151 * 179.97438 * 14 13 11 29 29 H 1.07997 * 120.24492 * 359.97438 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 7 2.3349 1.5720 0.0000 4 8 2.4067 -0.6672 1.1058 5 7 2.2837 -0.6609 -1.2542 6 6 3.5985 -0.7880 -1.4942 7 6 4.5391 -0.2968 -0.5620 8 6 5.8940 -0.4244 -0.8043 9 6 6.3442 -1.0310 -1.9565 10 6 5.4190 -1.5302 -2.9061 11 6 5.8778 -2.1481 -4.0810 12 1 6.8536 -2.6102 -4.1024 13 6 5.0339 -2.1655 -5.2756 14 7 3.9783 -1.4148 -5.3347 15 14 5.4768 -3.2694 -6.7159 16 1 5.4935 -4.6851 -6.2679 17 1 4.4695 -3.1040 -7.7944 18 1 6.8191 -2.8971 -7.2304 19 6 4.0395 -1.4105 -2.6633 20 1 -0.3633 0.5478 -0.8695 21 1 -0.3633 -1.0268 -0.0397 22 1 -0.3633 0.4792 0.9091 23 1 2.9441 1.8809 0.6887 24 1 2.0340 2.1826 -0.6910 25 1 4.1981 0.1810 0.3446 26 1 6.6051 -0.0459 -0.0850 27 1 7.4049 -1.1262 -2.1361 28 1 3.4189 -1.4261 -6.1271 29 1 3.3262 -1.7925 -3.3785 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404609570.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:24 Heat of formation + Delta-G solvation = 30.775589 kcal Electronic energy + Delta-G solvation = -14982.226133 eV Core-core repulsion = 12419.426086 eV Total energy + Delta-G solvation = -2562.800046 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -37.46944 -35.91059 -34.13965 -32.78239 -32.70827 -29.75389 -29.26379 -27.15974 -24.65354 -20.74040 -20.50136 -18.57427 -17.62302 -17.01201 -16.50092 -15.20208 -15.05156 -14.65754 -14.17599 -13.49368 -13.40007 -13.14193 -12.52570 -12.31764 -11.78480 -11.61163 -11.31945 -11.14658 -10.96027 -10.60937 -10.38398 -10.08367 -9.74038 -9.50233 -9.32889 -8.95266 -8.44091 -7.17005 -6.66337 -6.07293 -4.09755 0.07404 2.88462 3.05156 3.12017 3.15904 3.47152 3.51798 4.00196 4.02915 4.39994 4.71367 4.73655 4.91085 5.43603 6.00706 6.23425 6.42048 6.64543 7.01091 7.09444 7.23211 7.36927 7.63416 7.77166 8.04259 8.20477 8.35935 8.42317 8.51786 9.04894 9.16577 9.33770 10.25730 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.036730 B = 0.007185 C = 0.006344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.135012 B = 3896.086272 C = 4412.298625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.568 4.568 2 S 2.464 3.536 3 N -1.262 6.262 4 O -0.966 6.966 5 N -1.059 6.059 6 C 0.214 3.786 7 C -0.340 4.340 8 C -0.062 4.062 9 C -0.263 4.263 10 C 0.127 3.873 11 C -0.474 4.474 12 H 0.077 0.923 13 C 0.074 3.926 14 N -0.766 5.766 15 Si 0.914 3.086 16 H -0.262 1.262 17 H -0.279 1.279 18 H -0.265 1.265 19 C -0.177 4.177 20 H 0.135 0.865 21 H 0.138 0.862 22 H 0.124 0.876 23 H 0.407 0.593 24 H 0.408 0.592 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.283 0.717 29 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.051 5.751 5.510 12.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.726 4.726 2 S 2.571 3.429 3 N -0.920 5.920 4 O -0.945 6.945 5 N -0.958 5.958 6 C 0.110 3.890 7 C -0.365 4.365 8 C -0.081 4.081 9 C -0.284 4.284 10 C 0.123 3.877 11 C -0.503 4.503 12 H 0.095 0.905 13 C -0.149 4.149 14 N -0.388 5.388 15 Si 0.738 3.262 16 H -0.187 1.187 17 H -0.204 1.204 18 H -0.189 1.189 19 C -0.204 4.204 20 H 0.154 0.846 21 H 0.157 0.843 22 H 0.143 0.857 23 H 0.235 0.765 24 H 0.235 0.765 25 H 0.103 0.897 26 H 0.099 0.901 27 H 0.104 0.896 28 H 0.095 0.905 29 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.482 5.120 5.751 12.214 hybrid contribution 0.286 0.451 -0.358 0.642 sum -9.196 5.570 5.394 12.029 Atomic orbital electron populations 1.29215 1.19903 1.12469 1.11041 1.12100 0.78789 0.74929 0.77085 1.54164 1.62744 1.33984 1.41115 1.93502 1.71293 1.69789 1.59911 1.70798 1.27279 1.49360 1.48404 1.16967 0.82030 0.95689 0.94325 1.21132 0.94817 1.19864 1.00694 1.20094 0.93858 0.98225 0.95971 1.21002 0.97238 1.11361 0.98773 1.17419 0.91081 0.87937 0.91222 1.20537 1.01888 1.33541 0.94285 0.90474 1.27359 0.93542 0.93856 1.00165 1.69250 1.11640 1.29354 1.28581 0.86316 0.79196 0.81332 0.79379 1.18702 1.20428 1.18935 1.21107 0.95321 1.08688 0.95314 0.84601 0.84308 0.85705 0.76499 0.76544 0.89664 0.90095 0.89637 0.90535 0.85650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.57 -4.86 11.06 101.05 1.12 -3.74 15 2 S 2.46 37.65 4.87 -107.50 -0.52 37.12 15 3 N -1.26 -15.39 8.49 60.35 0.51 -14.88 15 4 O -0.97 -19.44 16.04 -35.23 -0.57 -20.01 15 5 N -1.06 -22.80 10.33 31.96 0.33 -22.46 15 6 C 0.21 5.64 6.42 -85.16 -0.55 5.09 15 7 C -0.34 -8.65 8.38 -38.44 -0.32 -8.97 15 8 C -0.06 -1.61 10.00 -39.75 -0.40 -2.00 15 9 C -0.26 -7.20 9.82 -38.45 -0.38 -7.57 15 10 C 0.13 3.71 5.61 -106.88 -0.60 3.11 15 11 C -0.47 -13.42 9.31 -35.52 -0.33 -13.75 15 12 H 0.08 2.09 7.96 -52.49 -0.42 1.67 15 13 C 0.07 1.93 5.40 -15.24 -0.08 1.85 15 14 N -0.77 -20.46 10.86 55.97 0.61 -19.85 15 15 Si 0.91 19.23 29.66 -169.99 -5.04 14.19 15 16 H -0.26 -5.50 7.11 56.52 0.40 -5.10 15 17 H -0.28 -5.63 7.11 56.52 0.40 -5.23 15 18 H -0.26 -5.48 7.11 56.52 0.40 -5.08 15 19 C -0.18 -5.14 8.70 -38.19 -0.33 -5.47 15 20 H 0.14 0.88 8.14 -51.92 -0.42 0.46 15 21 H 0.14 1.15 8.14 -51.93 -0.42 0.73 15 22 H 0.12 0.69 8.14 -51.92 -0.42 0.27 15 23 H 0.41 4.79 8.49 -34.47 -0.29 4.50 15 24 H 0.41 4.00 8.96 -34.47 -0.31 3.69 15 25 H 0.09 1.96 4.75 -52.49 -0.25 1.71 15 26 H 0.08 1.82 8.06 -52.49 -0.42 1.40 15 27 H 0.09 2.19 8.06 -52.49 -0.42 1.77 15 28 H 0.28 6.78 8.27 -40.82 -0.34 6.44 15 29 H 0.13 3.76 6.05 -52.49 -0.32 3.44 15 LS Contribution 261.28 15.07 3.94 3.94 Total: -1.00 -37.29 261.28 -5.45 -42.74 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -2.83 Total: 10.67 kcal Atomic # 6 Polarization: -29.59 SS G_CDS: -1.87 Total: -31.46 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: 1.45 Total: -57.20 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.57 Total: -20.01 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.04 Total: 14.19 kcal Atomic # 16 Polarization: 37.65 SS G_CDS: -0.52 Total: 37.12 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -37.29 -5.45 -42.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404609570.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.517 kcal (2) G-P(sol) polarization free energy of solvation -37.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds