Wall clock time and date at job start Mon Mar 30 2020 04:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 N 1.65605 * 108.33253 * 2 1 4 4 O 1.42095 * 114.64988 * 121.10608 * 2 1 3 5 5 N 1.49352 * 108.33141 * 242.21191 * 2 1 3 6 6 C 1.34255 * 120.00146 * 180.02562 * 5 2 1 7 7 C 1.41246 * 120.08103 * 359.97438 * 6 5 2 8 8 C 1.38235 * 120.32365 * 180.02562 * 7 6 5 9 9 C 1.37773 * 120.49803 * 0.02562 * 8 7 6 10 10 C 1.41660 * 120.15507 * 0.02562 * 9 8 7 11 11 C 1.40451 * 120.16118 * 179.97438 * 10 9 8 12 12 H 1.07993 * 119.99972 * 25.24742 * 11 10 9 13 13 C 1.46271 * 119.99712 * 205.25433 * 11 10 9 14 14 N 1.29664 * 120.00431 * 12.41140 * 13 11 10 15 15 Si 1.86798 * 119.99807 * 192.41971 * 13 11 10 16 16 H 1.48502 * 109.47574 * 59.99778 * 15 13 11 17 17 H 1.48499 * 109.47270 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47177 * 299.99666 * 15 13 11 19 19 C 1.39595 * 120.08612 * 179.72845 * 6 5 2 20 20 H 1.09004 * 109.46971 * 57.78635 * 1 2 3 21 21 H 1.08994 * 109.47252 * 177.78559 * 1 2 3 22 22 H 1.09001 * 109.46870 * 297.79194 * 1 2 3 23 23 H 0.96998 * 119.99290 * 124.94028 * 3 2 1 24 24 H 0.96997 * 120.00076 * 304.65550 * 3 2 1 25 25 H 1.07997 * 119.84447 * 0.02613 * 7 6 5 26 26 H 1.08000 * 119.75284 * 180.02562 * 8 7 6 27 27 H 1.07998 * 119.92024 * 180.02562 * 9 8 7 28 28 H 0.97000 * 120.00151 * 179.97438 * 14 13 11 29 29 H 1.07997 * 120.24492 * 359.97438 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 7 2.3349 1.5720 0.0000 4 8 2.4067 -0.6672 1.1058 5 7 2.2837 -0.6609 -1.2542 6 6 3.5985 -0.7880 -1.4942 7 6 4.5391 -0.2968 -0.5620 8 6 5.8940 -0.4244 -0.8043 9 6 6.3442 -1.0310 -1.9565 10 6 5.4190 -1.5302 -2.9061 11 6 5.8778 -2.1481 -4.0810 12 1 6.8536 -2.6102 -4.1024 13 6 5.0339 -2.1655 -5.2756 14 7 3.9783 -1.4148 -5.3347 15 14 5.4768 -3.2694 -6.7159 16 1 5.4935 -4.6851 -6.2679 17 1 4.4695 -3.1040 -7.7944 18 1 6.8191 -2.8971 -7.2304 19 6 4.0395 -1.4105 -2.6633 20 1 -0.3633 0.5478 -0.8695 21 1 -0.3633 -1.0268 -0.0397 22 1 -0.3633 0.4792 0.9091 23 1 2.9441 1.8809 0.6887 24 1 2.0340 2.1826 -0.6910 25 1 4.1981 0.1810 0.3446 26 1 6.6051 -0.0459 -0.0850 27 1 7.4049 -1.1262 -2.1361 28 1 3.4189 -1.4261 -6.1271 29 1 3.3262 -1.7925 -3.3785 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404609570.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:24 Heat of formation + Delta-G solvation = -0.271446 kcal Electronic energy + Delta-G solvation = -14983.572433 eV Core-core repulsion = 12419.426086 eV Total energy + Delta-G solvation = -2564.146347 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 2.78 seconds Orbital eigenvalues (eV) -39.35386 -37.35650 -35.97944 -34.67405 -33.91290 -31.39517 -30.52104 -29.01421 -26.68114 -22.68585 -22.38226 -20.06222 -19.33417 -18.32821 -17.92755 -16.93264 -16.71841 -16.23174 -15.93001 -14.96284 -14.57887 -14.22653 -14.14799 -13.96447 -13.59516 -13.17955 -13.06648 -12.73262 -12.65479 -12.44814 -12.07499 -11.63787 -11.51295 -11.38877 -11.11671 -10.85383 -10.06301 -9.25509 -8.62015 -7.96538 -6.22210 -1.05521 1.10646 1.35582 1.39640 1.51758 1.60294 2.03643 2.24021 2.61281 2.88125 3.30982 3.92687 4.03258 4.09543 4.48529 4.63591 4.78906 4.98733 5.10026 5.23103 5.33569 5.54817 5.74483 6.06224 6.17267 6.29588 6.35284 6.38778 6.51409 6.99826 7.16599 7.29953 8.32551 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.036730 B = 0.007185 C = 0.006344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.135012 B = 3896.086272 C = 4412.298625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.518 4.518 2 S 2.478 3.522 3 N -1.244 6.244 4 O -1.024 7.024 5 N -1.126 6.126 6 C 0.232 3.768 7 C -0.361 4.361 8 C -0.063 4.063 9 C -0.300 4.300 10 C 0.100 3.900 11 C -0.518 4.518 12 H 0.073 0.927 13 C 0.032 3.968 14 N -0.793 5.793 15 Si 0.995 3.005 16 H -0.261 1.261 17 H -0.259 1.259 18 H -0.256 1.256 19 C -0.233 4.233 20 H 0.170 0.830 21 H 0.155 0.845 22 H 0.176 0.824 23 H 0.416 0.584 24 H 0.424 0.576 25 H 0.108 0.892 26 H 0.110 0.890 27 H 0.088 0.912 28 H 0.294 0.706 29 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.802 6.893 6.060 14.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.681 4.681 2 S 2.588 3.412 3 N -0.908 5.908 4 O -1.003 7.003 5 N -1.020 6.020 6 C 0.127 3.873 7 C -0.386 4.386 8 C -0.082 4.082 9 C -0.320 4.320 10 C 0.097 3.903 11 C -0.546 4.546 12 H 0.092 0.908 13 C -0.189 4.189 14 N -0.416 5.416 15 Si 0.814 3.186 16 H -0.185 1.185 17 H -0.183 1.183 18 H -0.181 1.181 19 C -0.260 4.260 20 H 0.188 0.812 21 H 0.173 0.827 22 H 0.194 0.806 23 H 0.246 0.754 24 H 0.254 0.746 25 H 0.126 0.874 26 H 0.128 0.872 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -12.168 6.277 6.285 15.065 hybrid contribution 0.789 0.338 -0.313 0.913 sum -11.379 6.614 5.972 14.454 Atomic orbital electron populations 1.29088 1.08586 1.15035 1.15397 1.10472 0.83033 0.74097 0.73605 1.53262 1.63709 1.31727 1.42073 1.93454 1.75727 1.70969 1.60126 1.70279 1.25079 1.57023 1.49660 1.17086 0.84648 0.92674 0.92938 1.21442 0.94758 1.20530 1.01837 1.20468 0.94913 0.97060 0.95737 1.21132 0.97257 1.13704 0.99951 1.17830 0.91985 0.88360 0.92105 1.20846 1.02753 1.35296 0.95690 0.90837 1.28320 0.93005 0.94951 1.02608 1.69312 1.12305 1.30077 1.29857 0.85114 0.79550 0.78541 0.75417 1.18520 1.18325 1.18052 1.21012 0.94942 1.12261 0.97756 0.81170 0.82692 0.80622 0.75432 0.74603 0.87406 0.87200 0.89356 0.89430 0.87928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.52 -5.46 11.06 113.37 1.25 -4.21 15 2 S 2.48 69.50 4.87 -56.49 -0.28 69.23 15 3 N -1.24 -26.61 8.49 37.02 0.31 -26.30 15 4 O -1.02 -39.91 16.04 -148.98 -2.39 -42.30 15 5 N -1.13 -48.53 10.33 -52.79 -0.55 -49.08 15 6 C 0.23 12.71 6.42 39.84 0.26 12.96 15 7 C -0.36 -18.77 8.38 23.01 0.19 -18.57 15 8 C -0.06 -3.34 10.00 22.16 0.22 -3.12 15 9 C -0.30 -17.42 9.82 23.00 0.23 -17.19 15 10 C 0.10 6.28 5.61 -21.32 -0.12 6.16 15 11 C -0.52 -31.21 9.31 24.90 0.23 -30.98 15 12 H 0.07 4.27 7.96 -2.91 -0.02 4.24 15 13 C 0.03 1.73 5.40 87.10 0.47 2.20 15 14 N -0.79 -44.07 10.86 23.16 0.25 -43.82 15 15 Si 0.99 40.24 29.66 68.60 2.03 42.27 15 16 H -0.26 -10.41 7.11 99.48 0.71 -9.70 15 17 H -0.26 -9.56 7.11 99.48 0.71 -8.85 15 18 H -0.26 -9.96 7.11 99.48 0.71 -9.26 15 19 C -0.23 -14.42 8.70 23.17 0.20 -14.21 15 20 H 0.17 0.92 8.14 -2.39 -0.02 0.90 15 21 H 0.15 1.57 8.14 -2.39 -0.02 1.55 15 22 H 0.18 0.42 8.14 -2.39 -0.02 0.40 15 23 H 0.42 8.62 8.49 -96.75 -0.82 7.80 15 24 H 0.42 6.84 8.96 -96.75 -0.87 5.98 15 25 H 0.11 4.94 4.75 -2.91 -0.01 4.92 15 26 H 0.11 4.98 8.06 -2.91 -0.02 4.96 15 27 H 0.09 4.84 8.06 -2.91 -0.02 4.82 15 28 H 0.29 14.40 8.27 -92.71 -0.77 13.64 15 29 H 0.10 6.62 6.05 -2.91 -0.02 6.60 15 Total: -1.00 -90.78 261.28 1.83 -88.95 By element: Atomic # 1 Polarization: 28.50 SS G_CDS: -0.49 Total: 28.01 kcal Atomic # 6 Polarization: -69.89 SS G_CDS: 2.93 Total: -66.96 kcal Atomic # 7 Polarization: -119.22 SS G_CDS: 0.02 Total: -119.20 kcal Atomic # 8 Polarization: -39.91 SS G_CDS: -2.39 Total: -42.30 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 2.03 Total: 42.27 kcal Atomic # 16 Polarization: 69.50 SS G_CDS: -0.28 Total: 69.23 kcal Total: -90.78 1.83 -88.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404609570.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.675 kcal (2) G-P(sol) polarization free energy of solvation -90.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.78 seconds