Wall clock time and date at job start Mon Mar 30 2020 04:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35465 * 116.99959 * 2 1 4 4 N 1.32327 * 119.19263 * 359.97438 * 3 2 1 5 5 C 1.32283 * 120.75830 * 179.97438 * 4 3 2 6 6 C 1.38624 * 119.17257 * 0.02562 * 5 4 3 7 7 C 1.38569 * 118.52140 * 0.27632 * 6 5 4 8 8 C 1.50698 * 120.41583 * 179.72329 * 7 6 5 9 9 S 1.81397 * 109.46962 * 89.99415 * 8 7 6 10 10 C 1.81408 * 103.00025 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.46983 * 180.02562 * 10 9 8 12 12 H 1.07997 * 120.00255 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99741 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99846 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00213 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46958 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.46937 * 119.99969 * 15 13 11 18 18 H 1.48504 * 109.47002 * 240.00234 * 15 13 11 19 19 N 1.32307 * 119.19260 * 180.02562 * 3 2 1 20 20 H 1.08996 * 109.47255 * 299.99708 * 1 2 3 21 21 H 1.09005 * 109.47212 * 60.00321 * 1 2 3 22 22 H 1.09006 * 109.46995 * 179.97438 * 1 2 3 23 23 H 1.08001 * 120.41739 * 180.02562 * 5 4 3 24 24 H 1.08002 * 120.73663 * 179.97438 * 6 5 4 25 25 H 1.08992 * 109.47284 * 209.99600 * 8 7 6 26 26 H 1.09008 * 109.46590 * 330.00148 * 8 7 6 27 27 H 1.09001 * 109.46942 * 300.00069 * 10 9 8 28 28 H 1.08999 * 109.47125 * 59.99812 * 10 9 8 29 29 H 0.96996 * 119.99996 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0439 1.2070 0.0000 4 7 1.3076 2.3065 -0.0005 5 6 1.8758 3.5011 0.0000 6 6 3.2590 3.5915 0.0005 7 6 3.9987 2.4198 -0.0054 8 6 5.5049 2.4683 -0.0113 9 16 6.1160 2.4837 1.6965 10 6 7.9168 2.5430 1.4850 11 6 8.5811 2.5605 2.8375 12 1 7.9802 2.5385 3.7346 13 6 9.9561 2.6044 2.9297 14 7 10.6878 2.6316 1.8372 15 14 10.7797 2.6253 4.6062 16 1 9.7421 2.5890 5.6679 17 1 11.6649 1.4403 4.7376 18 1 11.5868 3.8641 4.7457 19 7 3.3660 1.2576 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.2695 4.3949 0.0000 24 1 3.7493 4.5539 0.0005 25 1 5.8946 1.5918 -0.5288 26 1 5.8372 3.3709 -0.5243 27 1 8.2465 1.6648 0.9299 28 1 8.1885 3.4438 0.9346 29 1 11.6551 2.6630 1.9020 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413014841.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:22 Heat of formation + Delta-G solvation = 9.184009 kcal Electronic energy + Delta-G solvation = -13958.615650 eV Core-core repulsion = 11394.879322 eV Total energy + Delta-G solvation = -2563.736328 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 5.50 seconds Orbital eigenvalues (eV) -41.21308 -38.41271 -34.33422 -33.17233 -32.09843 -28.74071 -28.34919 -27.57146 -24.01350 -23.29466 -22.39181 -18.51279 -17.88661 -16.59071 -16.43378 -15.80110 -15.34968 -14.85011 -14.69275 -14.36614 -13.94179 -13.45034 -13.00684 -12.67675 -12.36850 -12.11223 -11.94779 -11.44314 -11.13269 -10.98589 -10.90805 -10.59547 -9.95416 -9.62126 -9.21524 -8.99940 -8.88318 -8.64012 -6.75445 -6.21841 -4.26117 0.86811 1.04761 2.46563 2.62512 3.24447 3.31734 3.37980 3.74161 3.84863 3.97357 4.34073 4.40652 4.60244 5.03317 5.07290 5.10441 5.15615 5.18235 5.36115 5.43024 5.78310 5.80345 6.10406 6.74652 7.04748 7.07874 7.12007 7.72873 7.97344 8.08710 8.75788 9.37120 10.89422 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.050619 B = 0.004357 C = 0.004244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.021557 B = 6424.598119 C = 6596.348067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.291 6.291 3 C 0.498 3.502 4 N -0.576 5.576 5 C 0.184 3.816 6 C -0.252 4.252 7 C 0.247 3.753 8 C -0.056 4.056 9 S -0.275 6.275 10 C 0.089 3.911 11 C -0.512 4.512 12 H 0.068 0.932 13 C 0.065 3.935 14 N -0.892 5.892 15 Si 0.907 3.093 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.281 1.281 19 N -0.513 5.513 20 H 0.062 0.938 21 H 0.060 0.940 22 H 0.101 0.899 23 H 0.173 0.827 24 H 0.154 0.846 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.039 0.961 28 H 0.039 0.961 29 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.145 1.172 -5.765 18.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.192 6.192 3 C 0.196 3.804 4 N -0.306 5.306 5 C 0.019 3.981 6 C -0.276 4.276 7 C 0.100 3.900 8 C -0.204 4.204 9 S -0.049 6.049 10 C -0.057 4.057 11 C -0.551 4.551 12 H 0.086 0.914 13 C -0.139 4.139 14 N -0.530 5.530 15 Si 0.734 3.266 16 H -0.194 1.194 17 H -0.207 1.207 18 H -0.207 1.207 19 N -0.240 5.240 20 H 0.080 0.920 21 H 0.079 0.921 22 H 0.120 0.880 23 H 0.190 0.810 24 H 0.172 0.828 25 H 0.118 0.882 26 H 0.118 0.882 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.959 -0.080 -4.910 18.618 hybrid contribution 1.428 0.936 -0.321 1.737 sum -16.531 0.856 -5.230 17.360 Atomic orbital electron populations 1.22953 0.75992 1.03348 1.02665 1.86098 1.23080 1.22808 1.87198 1.20634 0.85987 0.84708 0.89112 1.68009 1.41480 0.99320 1.21829 1.22894 0.92407 0.94295 0.88504 1.22601 0.95901 1.01017 1.08091 1.20840 0.95514 0.86876 0.86794 1.22208 0.90171 1.06375 1.01628 1.86929 1.14243 1.97954 1.05734 1.21140 0.82778 1.00372 1.01459 1.20683 0.91138 1.52280 0.91042 0.91392 1.24963 0.96778 0.94612 0.97498 1.69959 1.05884 1.49572 1.27590 0.86279 0.79321 0.77749 0.83213 1.19418 1.20689 1.20712 1.67349 1.07473 1.30178 1.18959 0.91977 0.92082 0.88025 0.81021 0.82827 0.88151 0.88160 0.94263 0.94316 0.92500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.44 10.36 101.05 1.05 1.49 15 2 O -0.29 -4.26 10.55 -18.09 -0.19 -4.45 15 3 C 0.50 7.98 8.49 -91.25 -0.77 7.20 15 4 N -0.58 -7.90 9.23 -14.73 -0.14 -8.04 15 5 C 0.18 2.10 11.30 -17.21 -0.19 1.90 15 6 C -0.25 -3.22 9.85 -39.32 -0.39 -3.60 15 7 C 0.25 3.99 6.08 -82.26 -0.50 3.49 15 8 C -0.06 -0.95 6.27 36.00 0.23 -0.73 15 9 S -0.28 -6.00 21.64 -107.50 -2.33 -8.33 15 10 C 0.09 2.28 5.70 36.00 0.21 2.49 15 11 C -0.51 -14.34 9.13 -34.44 -0.31 -14.66 15 12 H 0.07 1.92 7.71 -52.49 -0.40 1.51 15 13 C 0.07 1.82 5.46 -17.82 -0.10 1.72 15 14 N -0.89 -25.68 13.29 55.43 0.74 -24.94 15 15 Si 0.91 21.29 29.54 -169.99 -5.02 16.27 15 16 H -0.27 -6.28 7.11 56.52 0.40 -5.87 15 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 19 N -0.51 -9.14 10.40 -10.95 -0.11 -9.25 15 20 H 0.06 0.57 8.09 -51.93 -0.42 0.15 15 21 H 0.06 0.53 8.09 -51.93 -0.42 0.11 15 22 H 0.10 0.68 8.14 -51.93 -0.42 0.25 15 23 H 0.17 1.22 8.06 -52.49 -0.42 0.80 15 24 H 0.15 1.58 8.06 -52.49 -0.42 1.16 15 25 H 0.10 1.73 8.14 -51.93 -0.42 1.31 15 26 H 0.10 1.47 8.10 -51.92 -0.42 1.05 15 27 H 0.04 1.05 8.14 -51.92 -0.42 0.62 15 28 H 0.04 1.00 8.14 -51.92 -0.42 0.58 15 29 H 0.27 7.16 8.31 -40.82 -0.34 6.82 15 LS Contribution 277.59 15.07 4.18 4.18 Total: -1.00 -31.93 277.59 -7.00 -38.92 By element: Atomic # 1 Polarization: -0.34 SS G_CDS: -3.34 Total: -3.68 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -0.79 Total: -0.69 kcal Atomic # 7 Polarization: -42.72 SS G_CDS: 0.49 Total: -42.23 kcal Atomic # 8 Polarization: -4.26 SS G_CDS: -0.19 Total: -4.45 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -6.00 SS G_CDS: -2.33 Total: -8.33 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -31.93 -7.00 -38.92 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413014841.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.106 kcal (2) G-P(sol) polarization free energy of solvation -31.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.50 seconds