Wall clock time and date at job start Mon Mar 30 2020 04:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35465 * 116.99959 * 2 1 4 4 N 1.32327 * 119.19263 * 359.97438 * 3 2 1 5 5 C 1.32283 * 120.75830 * 179.97438 * 4 3 2 6 6 C 1.38624 * 119.17257 * 0.02562 * 5 4 3 7 7 C 1.38569 * 118.52140 * 0.27632 * 6 5 4 8 8 C 1.50698 * 120.41583 * 179.72329 * 7 6 5 9 9 S 1.81397 * 109.46962 * 89.99415 * 8 7 6 10 10 C 1.81408 * 103.00025 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.46983 * 180.02562 * 10 9 8 12 12 H 1.07997 * 120.00255 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99741 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99846 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00213 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46958 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.46937 * 119.99969 * 15 13 11 18 18 H 1.48504 * 109.47002 * 240.00234 * 15 13 11 19 19 N 1.32307 * 119.19260 * 180.02562 * 3 2 1 20 20 H 1.08996 * 109.47255 * 299.99708 * 1 2 3 21 21 H 1.09005 * 109.47212 * 60.00321 * 1 2 3 22 22 H 1.09006 * 109.46995 * 179.97438 * 1 2 3 23 23 H 1.08001 * 120.41739 * 180.02562 * 5 4 3 24 24 H 1.08002 * 120.73663 * 179.97438 * 6 5 4 25 25 H 1.08992 * 109.47284 * 209.99600 * 8 7 6 26 26 H 1.09008 * 109.46590 * 330.00148 * 8 7 6 27 27 H 1.09001 * 109.46942 * 300.00069 * 10 9 8 28 28 H 1.08999 * 109.47125 * 59.99812 * 10 9 8 29 29 H 0.96996 * 119.99996 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0439 1.2070 0.0000 4 7 1.3076 2.3065 -0.0005 5 6 1.8758 3.5011 0.0000 6 6 3.2590 3.5915 0.0005 7 6 3.9987 2.4198 -0.0054 8 6 5.5049 2.4683 -0.0113 9 16 6.1160 2.4837 1.6965 10 6 7.9168 2.5430 1.4850 11 6 8.5811 2.5605 2.8375 12 1 7.9802 2.5385 3.7346 13 6 9.9561 2.6044 2.9297 14 7 10.6878 2.6316 1.8372 15 14 10.7797 2.6253 4.6062 16 1 9.7421 2.5890 5.6679 17 1 11.6649 1.4403 4.7376 18 1 11.5868 3.8641 4.7457 19 7 3.3660 1.2576 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.2695 4.3949 0.0000 24 1 3.7493 4.5539 0.0005 25 1 5.8946 1.5918 -0.5288 26 1 5.8372 3.3709 -0.5243 27 1 8.2465 1.6648 0.9299 28 1 8.1885 3.4438 0.9346 29 1 11.6551 2.6630 1.9020 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413014841.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:15 Heat of formation + Delta-G solvation = -14.151155 kcal Electronic energy + Delta-G solvation = -13959.627539 eV Core-core repulsion = 11394.879322 eV Total energy + Delta-G solvation = -2564.748216 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -42.28555 -39.42749 -35.45478 -35.29024 -33.21149 -30.71101 -29.68728 -28.40800 -25.34928 -24.97175 -23.64485 -19.58310 -19.00768 -18.59399 -17.54879 -17.21253 -16.68065 -16.42401 -15.83382 -15.48628 -15.10702 -14.82522 -14.54435 -14.44724 -14.12878 -13.66437 -12.90744 -12.75106 -12.66504 -12.37423 -12.31226 -12.17594 -11.70288 -11.44472 -10.78466 -10.75014 -10.30393 -10.01736 -8.52490 -8.33657 -6.46506 -0.32329 0.02910 1.05731 1.40463 1.41331 1.54718 1.55999 1.92677 2.37013 2.74479 2.96012 3.01235 3.30136 3.55870 3.99134 4.12848 4.34845 4.39403 4.40034 4.50350 4.69836 4.74727 4.95039 4.95326 5.12142 5.56898 5.69638 5.87775 6.12095 6.60465 6.99986 7.21403 8.78367 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.050619 B = 0.004357 C = 0.004244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.021557 B = 6424.598119 C = 6596.348067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.314 6.314 3 C 0.483 3.517 4 N -0.571 5.571 5 C 0.194 3.806 6 C -0.241 4.241 7 C 0.219 3.781 8 C -0.040 4.040 9 S -0.289 6.289 10 C 0.093 3.907 11 C -0.536 4.536 12 H 0.060 0.940 13 C 0.016 3.984 14 N -0.923 5.923 15 Si 0.976 3.024 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.270 1.270 19 N -0.555 5.555 20 H 0.064 0.936 21 H 0.068 0.932 22 H 0.129 0.871 23 H 0.224 0.776 24 H 0.183 0.817 25 H 0.091 0.909 26 H 0.126 0.874 27 H 0.015 0.985 28 H 0.027 0.973 29 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.628 2.372 -5.456 19.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.216 6.216 3 C 0.180 3.820 4 N -0.302 5.302 5 C 0.029 3.971 6 C -0.265 4.265 7 C 0.074 3.926 8 C -0.188 4.188 9 S -0.062 6.062 10 C -0.054 4.054 11 C -0.575 4.575 12 H 0.078 0.922 13 C -0.185 4.185 14 N -0.562 5.562 15 Si 0.800 3.200 16 H -0.191 1.191 17 H -0.199 1.199 18 H -0.195 1.195 19 N -0.282 5.282 20 H 0.082 0.918 21 H 0.087 0.913 22 H 0.147 0.853 23 H 0.240 0.760 24 H 0.200 0.800 25 H 0.110 0.890 26 H 0.144 0.856 27 H 0.034 0.966 28 H 0.045 0.955 29 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.446 1.115 -4.603 20.014 hybrid contribution 1.714 0.568 -0.514 1.877 sum -17.732 1.682 -5.117 18.532 Atomic orbital electron populations 1.23262 0.73587 1.05384 1.03083 1.86071 1.25525 1.22854 1.87121 1.20808 0.85757 0.85710 0.89729 1.68147 1.41082 0.99555 1.21380 1.23782 0.92434 0.94998 0.85891 1.22940 0.96520 1.00847 1.06213 1.20762 0.94759 0.87957 0.89165 1.22199 0.91436 1.07332 0.97842 1.86732 1.10962 1.97980 1.10552 1.20812 0.85924 0.98545 1.00113 1.20979 0.91936 1.52890 0.91694 0.92161 1.25884 0.97350 0.93813 1.01482 1.70052 1.06408 1.49946 1.29749 0.85227 0.78203 0.78255 0.78340 1.19122 1.19942 1.19522 1.67187 1.08964 1.31584 1.20471 0.91754 0.91322 0.85298 0.75960 0.80004 0.89039 0.85567 0.96627 0.95500 0.92018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 10.36 113.37 1.17 1.90 15 2 O -0.31 -9.07 10.55 -87.63 -0.92 -10.00 15 3 C 0.48 15.08 8.49 180.57 1.53 16.61 15 4 N -0.57 -14.32 9.23 -313.45 -2.89 -17.21 15 5 C 0.19 3.71 11.30 84.72 0.96 4.67 15 6 C -0.24 -5.46 9.85 22.44 0.22 -5.23 15 7 C 0.22 6.85 6.08 42.56 0.26 7.11 15 8 C -0.04 -1.36 6.27 71.24 0.45 -0.91 15 9 S -0.29 -12.75 21.64 -56.49 -1.22 -13.97 15 10 C 0.09 4.93 5.70 71.24 0.41 5.33 15 11 C -0.54 -30.63 9.13 25.60 0.23 -30.40 15 12 H 0.06 3.46 7.71 -2.91 -0.02 3.44 15 13 C 0.02 0.88 5.46 84.65 0.46 1.34 15 14 N -0.92 -53.79 13.29 21.45 0.28 -53.50 15 15 Si 0.98 43.66 29.54 68.60 2.03 45.69 15 16 H -0.27 -11.72 7.11 99.48 0.71 -11.01 15 17 H -0.27 -11.88 7.11 99.48 0.71 -11.17 15 18 H -0.27 -11.53 7.11 99.48 0.71 -10.82 15 19 N -0.55 -19.69 10.40 -301.51 -3.14 -22.82 15 20 H 0.06 1.08 8.09 -2.39 -0.02 1.06 15 21 H 0.07 1.08 8.09 -2.38 -0.02 1.06 15 22 H 0.13 1.47 8.14 -2.38 -0.02 1.45 15 23 H 0.22 1.89 8.06 -2.91 -0.02 1.87 15 24 H 0.18 3.00 8.06 -2.91 -0.02 2.98 15 25 H 0.09 3.23 8.14 -2.39 -0.02 3.21 15 26 H 0.13 3.56 8.10 -2.39 -0.02 3.54 15 27 H 0.02 0.87 8.14 -2.39 -0.02 0.85 15 28 H 0.03 1.44 8.14 -2.39 -0.02 1.42 15 29 H 0.27 14.67 8.31 -92.71 -0.77 13.89 15 Total: -1.00 -70.59 277.59 0.97 -69.61 By element: Atomic # 1 Polarization: 0.63 SS G_CDS: 1.15 Total: 1.77 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: 5.69 Total: 0.42 kcal Atomic # 7 Polarization: -87.79 SS G_CDS: -5.74 Total: -93.53 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: -0.92 Total: -10.00 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: -12.75 SS G_CDS: -1.22 Total: -13.97 kcal Total: -70.59 0.97 -69.61 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413014841.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.464 kcal (2) G-P(sol) polarization free energy of solvation -70.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds