Wall clock time and date at job start Mon Mar 30 2020 03:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33440 * 122.71697 * 2 1 4 4 S 1.76178 * 108.06248 * 180.02562 * 3 2 1 5 5 C 1.70968 * 90.33987 * 0.02562 * 4 3 2 6 6 N 1.38995 * 124.94565 * 180.02562 * 5 4 3 7 7 C 1.34780 * 120.00121 * 0.02562 * 6 5 4 8 8 O 1.21285 * 119.99712 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.00249 * 180.02562 * 7 6 5 10 10 H 1.09002 * 109.46959 * 59.99905 * 9 7 6 11 11 C 1.52997 * 109.47078 * 299.99993 * 9 7 6 12 12 C 1.50697 * 109.46956 * 179.97438 * 9 7 6 13 13 H 1.07999 * 120.00055 * 0.02562 * 12 9 7 14 14 C 1.37878 * 119.99687 * 180.02562 * 12 9 7 15 15 N 1.31511 * 120.00458 * 359.97438 * 14 12 9 16 16 Si 1.86805 * 119.99926 * 180.02562 * 14 12 9 17 17 H 1.48503 * 109.46980 * 89.99582 * 16 14 12 18 18 H 1.48493 * 109.47135 * 209.99651 * 16 14 12 19 19 H 1.48498 * 109.47274 * 330.00048 * 16 14 12 20 20 N 1.29622 * 110.10960 * 0.26277 * 5 4 3 21 21 H 1.08998 * 109.47639 * 89.98738 * 1 2 3 22 22 H 1.08998 * 109.47358 * 209.99695 * 1 2 3 23 23 H 1.09007 * 109.46664 * 329.99608 * 1 2 3 24 24 H 1.07998 * 125.97150 * 0.02775 * 3 2 1 25 25 H 0.96998 * 120.00061 * 180.02562 * 6 5 4 26 26 H 1.09002 * 109.47153 * 299.99793 * 11 9 7 27 27 H 1.09001 * 109.46832 * 179.97438 * 11 9 7 28 28 H 1.09004 * 109.47261 * 59.99965 * 11 9 7 29 29 H 0.96999 * 120.00480 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2282 1.1227 0.0000 4 16 3.9327 0.6770 -0.0007 5 6 3.5100 -0.9796 -0.0018 6 7 4.4171 -2.0327 -0.0022 7 6 5.7413 -1.7816 -0.0013 8 8 6.1413 -0.6366 -0.0006 9 6 6.7248 -2.9234 -0.0024 10 1 6.5730 -3.5329 -0.8932 11 6 6.5106 -3.7821 1.2457 12 6 8.1291 -2.3767 -0.0017 13 1 8.2930 -1.3092 -0.0002 14 6 9.2047 -3.2394 -0.0030 15 7 9.0051 -4.5393 -0.0043 16 14 10.9455 -2.5617 -0.0014 17 1 11.4064 -2.3846 1.3991 18 1 11.8467 -3.5108 -0.7029 19 1 10.9671 -1.2510 -0.6991 20 7 2.2204 -1.1105 -0.0071 21 1 -0.3634 0.0002 -1.0276 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5139 24 1 1.8357 2.1288 0.0004 25 1 4.0971 -2.9484 -0.0031 26 1 6.6625 -3.1727 2.1365 27 1 7.2217 -4.6082 1.2446 28 1 5.4949 -4.1776 1.2447 29 1 9.7618 -5.1462 -0.0056 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596836219.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:18 Heat of formation + Delta-G solvation = -16.861801 kcal Electronic energy + Delta-G solvation = -14646.698592 eV Core-core repulsion = 12081.832833 eV Total energy + Delta-G solvation = -2564.865759 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 3.46 seconds Orbital eigenvalues (eV) -41.49590 -40.37935 -36.07152 -35.93212 -32.87466 -31.76313 -28.41419 -27.26975 -26.04807 -23.97180 -22.24234 -20.58433 -19.14446 -18.32831 -17.87505 -17.37879 -16.75974 -16.57906 -15.56837 -15.25126 -14.88635 -14.58426 -14.03595 -13.76705 -13.45377 -13.28190 -13.03867 -12.77531 -12.67507 -12.33194 -12.17417 -11.97332 -11.75971 -11.11606 -10.76503 -10.74754 -10.47734 -10.20367 -9.17515 -8.18799 -6.30047 -0.22351 0.19864 1.01235 1.38060 1.42763 1.43853 1.53818 1.71371 2.00549 2.43683 3.12274 3.55898 4.05157 4.36583 4.47031 4.66022 4.80186 4.84457 4.84574 4.90137 4.95153 5.05177 5.39772 5.44794 5.69371 5.78350 6.03139 6.22703 6.76767 6.81078 6.95072 7.38906 8.87327 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.055313 B = 0.005743 C = 0.005287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.092873 B = 4873.947102 C = 5295.003086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.068 3.932 3 C -0.315 4.315 4 S 0.200 5.800 5 C 0.235 3.765 6 N -0.623 5.623 7 C 0.523 3.477 8 O -0.529 6.529 9 C 0.037 3.963 10 H 0.055 0.945 11 C -0.126 4.126 12 C -0.532 4.532 13 H 0.057 0.943 14 C 0.023 3.977 15 N -0.909 5.909 16 Si 0.957 3.043 17 H -0.274 1.274 18 H -0.277 1.277 19 H -0.276 1.276 20 N -0.534 5.534 21 H 0.085 0.915 22 H 0.071 0.929 23 H 0.098 0.902 24 H 0.205 0.795 25 H 0.430 0.570 26 H 0.028 0.972 27 H 0.078 0.922 28 H 0.051 0.949 29 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.715 6.698 0.475 15.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.064 4.064 3 C -0.455 4.455 4 S 0.450 5.550 5 C -0.132 4.132 6 N -0.273 5.273 7 C 0.312 3.688 8 O -0.404 6.404 9 C 0.016 3.984 10 H 0.072 0.928 11 C -0.184 4.184 12 C -0.570 4.570 13 H 0.076 0.924 14 C -0.177 4.177 15 N -0.548 5.548 16 Si 0.783 3.217 17 H -0.200 1.200 18 H -0.202 1.202 19 H -0.201 1.201 20 N -0.259 5.259 21 H 0.103 0.897 22 H 0.090 0.910 23 H 0.117 0.883 24 H 0.222 0.778 25 H 0.270 0.730 26 H 0.047 0.953 27 H 0.096 0.904 28 H 0.070 0.930 29 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.485 7.278 0.465 14.459 hybrid contribution 0.071 -0.492 -0.048 0.499 sum -12.415 6.785 0.417 14.154 Atomic orbital electron populations 1.20438 0.84552 1.04216 1.03797 1.20497 0.99334 0.85712 1.00810 1.27485 0.96978 1.04964 1.16060 1.85134 1.04569 0.97057 1.68262 1.23765 0.90813 0.95346 1.03289 1.43245 1.04314 1.08655 1.71130 1.22286 0.81231 0.92694 0.72558 1.90477 1.77489 1.24099 1.48369 1.18821 0.91419 0.90186 0.98003 0.92765 1.21648 1.00478 1.00589 0.95697 1.21242 0.90312 0.93602 1.51869 0.92446 1.25567 1.02655 0.95097 0.94340 1.69932 1.32250 1.02203 1.50437 0.85563 0.79650 0.78162 0.78350 1.20010 1.20225 1.20107 1.66265 1.02160 1.33902 1.23546 0.89680 0.91015 0.88298 0.77809 0.72994 0.95279 0.90364 0.93015 0.92421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.24 10.31 71.23 0.73 -0.51 15 2 C 0.07 1.83 6.74 41.45 0.28 2.11 15 3 C -0.32 -7.96 11.11 66.73 0.74 -7.21 15 4 S 0.20 6.65 20.22 -56.49 -1.14 5.51 15 5 C 0.23 8.39 8.19 179.21 1.47 9.86 15 6 N -0.62 -22.74 5.30 -313.65 -1.66 -24.40 15 7 C 0.52 22.87 7.11 87.66 0.62 23.50 15 8 O -0.53 -25.57 12.93 -3.05 -0.04 -25.61 15 9 C 0.04 1.75 2.64 -12.29 -0.03 1.72 15 10 H 0.05 2.65 8.14 -2.39 -0.02 2.63 15 11 C -0.13 -5.47 8.87 71.98 0.64 -4.84 15 12 C -0.53 -29.08 8.37 25.60 0.21 -28.86 15 13 H 0.06 3.31 6.75 -2.91 -0.02 3.29 15 14 C 0.02 1.24 5.30 84.66 0.45 1.69 15 15 N -0.91 -49.11 11.32 21.45 0.24 -48.86 15 16 Si 0.96 43.20 29.54 68.60 2.03 45.23 15 17 H -0.27 -12.11 7.11 99.48 0.71 -11.40 15 18 H -0.28 -12.02 7.11 99.48 0.71 -11.32 15 19 H -0.28 -12.57 7.11 99.48 0.71 -11.86 15 20 N -0.53 -17.60 10.58 -189.60 -2.01 -19.61 15 21 H 0.08 1.29 8.14 -2.39 -0.02 1.27 15 22 H 0.07 1.28 8.14 -2.39 -0.02 1.26 15 23 H 0.10 1.20 8.12 -2.38 -0.02 1.18 15 24 H 0.20 3.55 8.06 -2.91 -0.02 3.52 15 25 H 0.43 13.54 8.24 -92.71 -0.76 12.77 15 26 H 0.03 1.26 8.14 -2.39 -0.02 1.24 15 27 H 0.08 3.76 6.07 -2.39 -0.01 3.75 15 28 H 0.05 1.82 7.56 -2.38 -0.02 1.80 15 29 H 0.27 13.67 8.31 -92.71 -0.77 12.90 15 Total: -1.00 -62.21 265.52 2.95 -59.26 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: 0.41 Total: 11.04 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: 5.12 Total: -2.55 kcal Atomic # 7 Polarization: -89.45 SS G_CDS: -3.42 Total: -92.87 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -0.04 Total: -25.61 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: 6.65 SS G_CDS: -1.14 Total: 5.51 kcal Total: -62.21 2.95 -59.26 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596836219.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.398 kcal (2) G-P(sol) polarization free energy of solvation -62.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.46 seconds