Wall clock time and date at job start Mon Mar 30 2020 04:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47451 * 2 1 4 4 C 1.50704 * 109.46745 * 239.99807 * 2 1 3 5 5 H 1.07994 * 120.00471 * 275.10078 * 4 2 1 6 6 C 1.37881 * 119.99643 * 95.11244 * 4 2 1 7 7 N 1.31516 * 119.99696 * 184.90661 * 6 4 2 8 8 Si 1.86799 * 120.00269 * 4.89906 * 6 4 2 9 9 H 1.48496 * 109.46932 * 84.82446 * 8 6 4 10 10 H 1.48491 * 109.47212 * 204.82741 * 8 6 4 11 11 H 1.48507 * 109.46996 * 324.82915 * 8 6 4 12 12 C 1.50703 * 109.47012 * 120.00026 * 2 1 3 13 13 O 1.21283 * 119.99860 * 119.99746 * 12 2 1 14 14 N 1.34770 * 120.00307 * 299.99943 * 12 2 1 15 15 C 1.46498 * 120.00284 * 180.02562 * 14 12 2 16 16 C 1.50700 * 109.47329 * 179.97438 * 15 14 12 17 17 C 1.33641 * 122.74969 * 95.00040 * 16 15 14 18 18 S 1.76200 * 107.92390 * 180.02562 * 17 16 15 19 19 C 1.70974 * 90.28322 * 359.97438 * 18 17 16 20 20 N 1.29030 * 110.16637 * 359.73299 * 19 18 17 21 21 H 1.08999 * 109.47215 * 175.07421 * 1 2 3 22 22 H 1.08996 * 109.46878 * 55.07545 * 1 2 3 23 23 H 1.08997 * 109.46791 * 295.07478 * 1 2 3 24 24 H 0.97001 * 120.00027 * 179.97438 * 7 6 4 25 25 H 0.97000 * 119.99493 * 359.97438 * 14 12 2 26 26 H 1.08995 * 109.47033 * 300.00320 * 15 14 12 27 27 H 1.08997 * 109.46818 * 59.99864 * 15 14 12 28 28 H 1.07997 * 126.03585 * 359.97438 * 17 16 15 29 29 H 1.07999 * 124.91625 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.1339 -1.7856 -1.2297 6 6 2.3624 0.0123 -2.3573 7 7 2.7082 -0.6128 -3.4616 8 14 2.3182 1.8793 -2.3157 9 1 3.6038 2.3929 -1.7787 10 1 2.1127 2.4003 -3.6909 11 1 1.2029 2.3287 -1.4442 12 6 2.0324 -0.7104 1.2305 13 8 2.7296 -1.6966 1.1192 14 7 1.7068 -0.2500 2.4546 15 6 2.1956 -0.9403 3.6507 16 6 1.6937 -0.2297 4.8812 17 6 0.5849 -0.6005 5.5286 18 16 0.3654 0.4887 6.8960 19 6 1.7868 1.3340 6.4618 20 7 2.3155 0.8047 5.4105 21 1 -0.3633 -1.0239 -0.0882 22 1 -0.3633 0.5883 -0.8426 23 1 -0.3633 0.4355 0.9308 24 1 2.9400 -0.1044 -4.2545 25 1 1.1495 0.5389 2.5435 26 1 1.8327 -1.9681 3.6508 27 1 3.2856 -0.9399 3.6505 28 1 -0.0626 -1.4221 5.2603 29 1 2.1869 2.1846 6.9935 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597008662.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:38 Heat of formation + Delta-G solvation = 5.757451 kcal Electronic energy + Delta-G solvation = -14543.273827 eV Core-core repulsion = 11979.388913 eV Total energy + Delta-G solvation = -2563.884914 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.15226 -38.65061 -34.23370 -33.61991 -31.45899 -30.54412 -26.91062 -25.22835 -24.82169 -22.19425 -19.91868 -19.29266 -18.32083 -17.02540 -16.27550 -15.69306 -15.48071 -14.46696 -14.33253 -13.98552 -13.60264 -13.42264 -12.89452 -12.66896 -12.34782 -12.09046 -11.53792 -11.33291 -11.06873 -10.73175 -10.24286 -9.89302 -9.79569 -9.72048 -9.30218 -9.14112 -8.63571 -8.52606 -8.47248 -6.04209 -4.03282 0.46153 1.13593 1.46491 2.47998 3.27394 3.33960 3.36297 3.66184 3.91905 4.09602 4.41073 4.80882 5.00859 5.11217 5.26486 5.57033 5.82631 5.91257 6.07592 6.17757 6.41409 6.54872 6.85187 6.96409 7.20094 7.50446 7.58166 8.16996 8.56896 9.11388 9.17245 9.55560 11.09066 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.043601 B = 0.005244 C = 0.005060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.034204 B = 5338.618540 C = 5532.240885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.004 4.004 3 H 0.054 0.946 4 C -0.494 4.494 5 H 0.086 0.914 6 C 0.071 3.929 7 N -0.895 5.895 8 Si 0.872 3.128 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.265 1.265 12 C 0.521 3.479 13 O -0.529 6.529 14 N -0.743 5.743 15 C 0.195 3.805 16 C 0.053 3.947 17 C -0.234 4.234 18 S 0.113 5.887 19 C 0.021 3.979 20 N -0.457 5.457 21 H 0.052 0.948 22 H 0.054 0.946 23 H 0.025 0.975 24 H 0.264 0.736 25 H 0.395 0.605 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.181 0.819 29 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.813 5.133 21.133 22.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.026 4.026 3 H 0.072 0.928 4 C -0.532 4.532 5 H 0.104 0.896 6 C -0.131 4.131 7 N -0.533 5.533 8 Si 0.699 3.301 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.190 1.190 12 C 0.309 3.691 13 O -0.403 6.403 14 N -0.399 5.399 15 C 0.068 3.932 16 C -0.079 4.079 17 C -0.375 4.375 18 S 0.365 5.635 19 C -0.278 4.278 20 N -0.171 5.171 21 H 0.071 0.929 22 H 0.073 0.927 23 H 0.044 0.956 24 H 0.074 0.926 25 H 0.228 0.772 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.199 0.801 29 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -6.439 4.757 21.426 22.873 hybrid contribution 0.102 1.091 -0.616 1.257 sum -6.337 5.849 20.809 22.526 Atomic orbital electron populations 1.21946 0.96804 1.01352 0.98997 1.19345 0.94049 0.96992 0.92171 0.92780 1.20752 1.42953 0.96195 0.93341 0.89573 1.25031 0.94656 0.98018 0.95357 1.69885 1.46069 1.35672 1.01665 0.86956 0.79049 0.86734 0.77393 1.20085 1.21270 1.18965 1.21798 0.78997 0.84585 0.83725 1.90587 1.36919 1.26357 1.86417 1.46336 1.55705 1.32764 1.05050 1.19618 0.99857 0.94308 0.79386 1.20484 0.93156 0.94746 0.99539 1.27013 1.03377 1.06983 1.00080 1.84034 1.27210 1.24183 1.28095 1.28459 0.96944 1.04679 0.97669 1.66167 1.31910 1.09610 1.09383 0.92873 0.92708 0.95599 0.92559 0.77187 0.90230 0.90216 0.80120 0.78319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 9.12 37.16 0.34 -2.33 15 2 C 0.00 -0.09 2.30 -92.92 -0.21 -0.30 15 3 H 0.05 1.26 5.29 -51.93 -0.27 0.98 15 4 C -0.49 -14.38 8.36 -34.44 -0.29 -14.66 15 5 H 0.09 2.83 7.61 -52.49 -0.40 2.43 15 6 C 0.07 2.08 5.47 -17.82 -0.10 1.98 15 7 N -0.90 -27.84 13.96 55.43 0.77 -27.06 15 8 Si 0.87 21.27 26.99 -169.99 -4.59 16.68 15 9 H -0.28 -6.70 7.11 56.52 0.40 -6.29 15 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 15 11 H -0.26 -5.96 6.82 56.52 0.39 -5.58 15 12 C 0.52 11.73 7.15 -10.99 -0.08 11.65 15 13 O -0.53 -14.00 15.77 5.55 0.09 -13.91 15 14 N -0.74 -12.89 5.41 -61.48 -0.33 -13.22 15 15 C 0.19 2.96 6.11 -5.19 -0.03 2.93 15 16 C 0.05 0.67 6.11 -84.23 -0.51 0.15 15 17 C -0.23 -2.35 11.12 29.12 0.32 -2.02 15 18 S 0.11 0.88 23.22 -107.50 -2.50 -1.61 15 19 C 0.02 0.20 12.23 51.59 0.63 0.83 15 20 N -0.46 -5.88 10.53 -11.90 -0.13 -6.00 15 21 H 0.05 1.08 8.14 -51.93 -0.42 0.66 15 22 H 0.05 1.11 8.14 -51.93 -0.42 0.68 15 23 H 0.03 0.42 7.43 -51.93 -0.39 0.03 15 24 H 0.26 7.66 8.31 -40.82 -0.34 7.32 15 25 H 0.39 6.03 7.82 -40.82 -0.32 5.72 15 26 H 0.08 1.15 8.10 -51.93 -0.42 0.73 15 27 H 0.08 1.33 8.14 -51.93 -0.42 0.90 15 28 H 0.18 1.48 8.06 -52.49 -0.42 1.06 15 29 H 0.20 1.15 8.06 -52.49 -0.42 0.72 15 LS Contribution 269.97 15.07 4.07 4.07 Total: -1.00 -34.41 269.97 -5.61 -40.02 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -3.06 Total: 2.82 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: 0.07 Total: -1.78 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: 0.32 Total: -46.29 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: 0.09 Total: -13.91 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.59 Total: 16.68 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.50 Total: -1.61 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -34.41 -5.61 -40.02 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597008662.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.781 kcal (2) G-P(sol) polarization free energy of solvation -34.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds