Wall clock time and date at job start Mon Mar 30 2020 04:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47451 * 2 1 4 4 C 1.50704 * 109.46745 * 239.99807 * 2 1 3 5 5 H 1.07994 * 120.00471 * 275.10078 * 4 2 1 6 6 C 1.37881 * 119.99643 * 95.11244 * 4 2 1 7 7 N 1.31516 * 119.99696 * 184.90661 * 6 4 2 8 8 Si 1.86799 * 120.00269 * 4.89906 * 6 4 2 9 9 H 1.48496 * 109.46932 * 84.82446 * 8 6 4 10 10 H 1.48491 * 109.47212 * 204.82741 * 8 6 4 11 11 H 1.48507 * 109.46996 * 324.82915 * 8 6 4 12 12 C 1.50703 * 109.47012 * 120.00026 * 2 1 3 13 13 O 1.21283 * 119.99860 * 119.99746 * 12 2 1 14 14 N 1.34770 * 120.00307 * 299.99943 * 12 2 1 15 15 C 1.46498 * 120.00284 * 180.02562 * 14 12 2 16 16 C 1.50700 * 109.47329 * 179.97438 * 15 14 12 17 17 C 1.33641 * 122.74969 * 95.00040 * 16 15 14 18 18 S 1.76200 * 107.92390 * 180.02562 * 17 16 15 19 19 C 1.70974 * 90.28322 * 359.97438 * 18 17 16 20 20 N 1.29030 * 110.16637 * 359.73299 * 19 18 17 21 21 H 1.08999 * 109.47215 * 175.07421 * 1 2 3 22 22 H 1.08996 * 109.46878 * 55.07545 * 1 2 3 23 23 H 1.08997 * 109.46791 * 295.07478 * 1 2 3 24 24 H 0.97001 * 120.00027 * 179.97438 * 7 6 4 25 25 H 0.97000 * 119.99493 * 359.97438 * 14 12 2 26 26 H 1.08995 * 109.47033 * 300.00320 * 15 14 12 27 27 H 1.08997 * 109.46818 * 59.99864 * 15 14 12 28 28 H 1.07997 * 126.03585 * 359.97438 * 17 16 15 29 29 H 1.07999 * 124.91625 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.1339 -1.7856 -1.2297 6 6 2.3624 0.0123 -2.3573 7 7 2.7082 -0.6128 -3.4616 8 14 2.3182 1.8793 -2.3157 9 1 3.6038 2.3929 -1.7787 10 1 2.1127 2.4003 -3.6909 11 1 1.2029 2.3287 -1.4442 12 6 2.0324 -0.7104 1.2305 13 8 2.7296 -1.6966 1.1192 14 7 1.7068 -0.2500 2.4546 15 6 2.1956 -0.9403 3.6507 16 6 1.6937 -0.2297 4.8812 17 6 0.5849 -0.6005 5.5286 18 16 0.3654 0.4887 6.8960 19 6 1.7868 1.3340 6.4618 20 7 2.3155 0.8047 5.4105 21 1 -0.3633 -1.0239 -0.0882 22 1 -0.3633 0.5883 -0.8426 23 1 -0.3633 0.4355 0.9308 24 1 2.9400 -0.1044 -4.2545 25 1 1.1495 0.5389 2.5435 26 1 1.8327 -1.9681 3.6508 27 1 3.2856 -0.9399 3.6505 28 1 -0.0626 -1.4221 5.2603 29 1 2.1869 2.1846 6.9935 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597008662.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:37 Heat of formation + Delta-G solvation = -21.443951 kcal Electronic energy + Delta-G solvation = -14544.453369 eV Core-core repulsion = 11979.388913 eV Total energy + Delta-G solvation = -2565.064456 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 3.02 seconds Orbital eigenvalues (eV) -41.14486 -40.25063 -35.74514 -35.61926 -33.39548 -31.65603 -28.04863 -27.20513 -25.74096 -23.95330 -21.18592 -20.57987 -19.24017 -19.11427 -17.67392 -17.08360 -16.73629 -16.09593 -15.92775 -15.18656 -15.04242 -14.51882 -14.19682 -14.14096 -14.04537 -13.67384 -13.09092 -12.94550 -12.60943 -12.36134 -12.13885 -11.75673 -11.25997 -10.76536 -10.64323 -10.59796 -10.42383 -10.05241 -9.83525 -8.27438 -6.33736 -0.25977 0.46052 0.75038 1.35263 1.38769 1.48484 1.58172 1.87545 2.35248 2.57524 3.10160 3.21161 3.95175 4.15519 4.21717 4.40939 4.43570 4.58936 4.71029 4.74007 4.86398 5.04892 5.13783 5.47629 5.49999 5.58389 6.25190 6.63447 6.75689 6.82806 7.27356 7.48063 8.90506 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.043601 B = 0.005244 C = 0.005060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.034204 B = 5338.618540 C = 5532.240885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.008 4.008 3 H 0.069 0.931 4 C -0.507 4.507 5 H 0.024 0.976 6 C 0.006 3.994 7 N -0.951 5.951 8 Si 0.946 3.054 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.224 1.224 12 C 0.520 3.480 13 O -0.582 6.582 14 N -0.719 5.719 15 C 0.197 3.803 16 C 0.030 3.970 17 C -0.237 4.237 18 S 0.188 5.812 19 C 0.016 3.984 20 N -0.501 5.501 21 H 0.040 0.960 22 H 0.057 0.943 23 H 0.073 0.927 24 H 0.267 0.733 25 H 0.409 0.591 26 H 0.083 0.917 27 H 0.058 0.942 28 H 0.197 0.803 29 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.811 8.014 24.022 26.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.030 4.030 3 H 0.087 0.913 4 C -0.545 4.545 5 H 0.043 0.957 6 C -0.191 4.191 7 N -0.591 5.591 8 Si 0.768 3.232 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.147 1.147 12 C 0.309 3.691 13 O -0.460 6.460 14 N -0.373 5.373 15 C 0.071 3.929 16 C -0.102 4.102 17 C -0.377 4.377 18 S 0.441 5.559 19 C -0.282 4.282 20 N -0.215 5.215 21 H 0.060 0.940 22 H 0.076 0.924 23 H 0.091 0.909 24 H 0.076 0.924 25 H 0.245 0.755 26 H 0.101 0.899 27 H 0.076 0.924 28 H 0.214 0.786 29 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -8.487 7.671 24.391 26.940 hybrid contribution 0.689 0.104 -1.353 1.522 sum -7.798 7.774 23.038 25.534 Atomic orbital electron populations 1.21816 0.93574 1.01313 1.01647 1.19338 0.96473 0.96817 0.90380 0.91335 1.20894 1.43492 0.93903 0.96249 0.95721 1.26072 0.93996 1.04567 0.94451 1.70071 1.47886 1.38347 1.02767 0.85768 0.80451 0.78606 0.78361 1.19726 1.20878 1.14673 1.21536 0.78526 0.83929 0.85136 1.90571 1.39440 1.28702 1.87334 1.45991 1.54427 1.32590 1.04263 1.19571 0.98686 0.94869 0.79797 1.20026 0.94695 0.96029 0.99473 1.27282 1.02403 1.07441 1.00594 1.83842 1.25023 1.21680 1.25382 1.28977 0.97473 1.05061 0.96691 1.66118 1.33491 1.10584 1.11345 0.94043 0.92396 0.90853 0.92384 0.75478 0.89873 0.92384 0.78606 0.75435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.75 9.12 71.98 0.66 -4.10 15 2 C -0.01 -0.39 2.30 -12.28 -0.03 -0.42 15 3 H 0.07 3.00 5.29 -2.39 -0.01 2.99 15 4 C -0.51 -30.64 8.36 25.60 0.21 -30.42 15 5 H 0.02 1.74 7.61 -2.91 -0.02 1.72 15 6 C 0.01 0.34 5.47 84.66 0.46 0.80 15 7 N -0.95 -61.59 13.96 21.45 0.30 -61.29 15 8 Si 0.95 43.33 26.99 68.60 1.85 45.19 15 9 H -0.27 -12.27 7.11 99.48 0.71 -11.56 15 10 H -0.28 -12.73 7.11 99.48 0.71 -12.02 15 11 H -0.22 -8.76 6.82 99.48 0.68 -8.08 15 12 C 0.52 23.61 7.15 87.66 0.63 24.24 15 13 O -0.58 -32.25 15.77 -3.04 -0.05 -32.29 15 14 N -0.72 -24.06 5.41 -466.80 -2.53 -26.59 15 15 C 0.20 5.91 6.11 85.63 0.52 6.44 15 16 C 0.03 0.70 6.11 41.52 0.25 0.95 15 17 C -0.24 -4.02 11.12 66.78 0.74 -3.28 15 18 S 0.19 2.17 23.22 -56.49 -1.31 0.86 15 19 C 0.02 0.23 12.23 130.65 1.60 1.83 15 20 N -0.50 -11.85 10.53 -191.55 -2.02 -13.86 15 21 H 0.04 1.64 8.14 -2.39 -0.02 1.62 15 22 H 0.06 2.15 8.14 -2.39 -0.02 2.13 15 23 H 0.07 2.07 7.43 -2.39 -0.02 2.06 15 24 H 0.27 16.03 8.31 -92.71 -0.77 15.25 15 25 H 0.41 11.33 7.82 -92.71 -0.73 10.60 15 26 H 0.08 2.41 8.10 -2.39 -0.02 2.40 15 27 H 0.06 1.99 8.14 -2.39 -0.02 1.97 15 28 H 0.20 2.58 8.06 -2.91 -0.02 2.56 15 29 H 0.23 1.73 8.06 -2.91 -0.02 1.71 15 Total: -1.00 -80.33 269.97 1.72 -78.62 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 0.42 Total: 13.34 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: 5.05 Total: -3.96 kcal Atomic # 7 Polarization: -97.50 SS G_CDS: -4.24 Total: -101.74 kcal Atomic # 8 Polarization: -32.25 SS G_CDS: -0.05 Total: -32.29 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 1.85 Total: 45.19 kcal Atomic # 16 Polarization: 2.17 SS G_CDS: -1.31 Total: 0.86 kcal Total: -80.33 1.72 -78.62 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597008662.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.175 kcal (2) G-P(sol) polarization free energy of solvation -80.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.02 seconds