Wall clock time and date at job start Mon Mar 30 2020 04:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50700 * 109.47313 * 120.00230 * 2 1 3 5 5 H 1.07997 * 120.00357 * 119.99585 * 4 2 1 6 6 C 1.37876 * 119.99656 * 299.99978 * 4 2 1 7 7 N 1.31514 * 119.99993 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99954 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.46976 * 89.99956 * 8 6 4 10 10 H 1.48495 * 109.47491 * 209.99845 * 8 6 4 11 11 H 1.48503 * 109.47229 * 330.00587 * 8 6 4 12 12 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 13 13 O 1.21283 * 120.00262 * 240.00295 * 12 2 1 14 14 N 1.34777 * 119.99928 * 59.72201 * 12 2 1 15 15 C 1.46499 * 120.00199 * 180.27479 * 14 12 2 16 16 C 1.50694 * 109.47550 * 180.02562 * 15 14 12 17 17 C 1.33643 * 122.75007 * 94.99805 * 16 15 14 18 18 S 1.76202 * 107.92536 * 180.02562 * 17 16 15 19 19 C 1.70974 * 90.28128 * 0.02562 * 18 17 16 20 20 N 1.29029 * 110.17100 * 359.73008 * 19 18 17 21 21 H 1.08996 * 109.46783 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 23 23 H 1.09001 * 109.46739 * 59.99706 * 1 2 3 24 24 H 0.97009 * 119.99880 * 180.02562 * 7 6 4 25 25 H 0.97000 * 120.00317 * 0.28382 * 14 12 2 26 26 H 1.08998 * 109.47134 * 300.00670 * 15 14 12 27 27 H 1.09002 * 109.46857 * 59.99862 * 15 14 12 28 28 H 1.07997 * 126.03558 * 0.02562 * 17 16 15 29 29 H 1.08002 * 124.91542 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6033 8 14 2.3214 -1.1204 4.0079 9 1 3.6298 -0.5459 4.4123 10 1 1.3432 -0.9493 5.1120 11 1 2.4860 -2.5662 3.7118 12 6 2.0324 -0.7104 -1.2305 13 8 2.7296 -1.6965 -1.1193 14 7 1.7022 -0.2532 -2.4546 15 6 2.1855 -0.9472 -3.6507 16 6 1.6792 -0.2397 -4.8812 17 6 2.3969 0.6800 -5.5331 18 16 1.4390 1.2475 -6.8988 19 6 0.1685 0.1922 -6.4569 20 7 0.4941 -0.4802 -5.4050 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 0.7087 1.1612 3.4844 25 1 1.1446 0.5355 -2.5436 26 1 3.2755 -0.9477 -3.6550 27 1 1.8218 -1.9748 -3.6465 28 1 3.3888 1.0161 -5.2694 29 1 -0.7690 0.0983 -6.9850 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597008666.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:41 Heat of formation + Delta-G solvation = 3.488373 kcal Electronic energy + Delta-G solvation = -14501.162863 eV Core-core repulsion = 11937.179554 eV Total energy + Delta-G solvation = -2563.983309 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.09202 -38.54517 -34.18238 -33.68258 -31.08742 -30.08363 -26.78877 -25.09761 -24.72373 -22.24038 -19.85780 -19.32474 -18.28597 -16.37081 -16.14761 -15.62665 -15.30573 -14.40645 -14.35790 -14.13357 -13.45595 -13.20068 -12.90316 -12.67647 -12.12968 -11.57675 -11.35789 -10.97187 -10.68146 -10.66481 -10.20169 -9.93434 -9.83694 -9.66802 -9.23617 -8.93654 -8.54471 -8.43449 -8.27935 -5.99824 -4.02802 0.51550 1.18835 1.51615 2.54005 3.36223 3.41701 3.49268 3.76018 3.98875 4.18453 4.51747 4.86325 5.05918 5.16412 5.33473 5.63015 5.87502 5.98725 6.30770 6.67566 6.88753 6.96914 7.06133 7.51913 7.55960 7.79832 8.02440 8.18200 8.47488 9.06333 9.26041 9.62575 11.07846 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.058452 B = 0.004681 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.907609 B = 5979.930053 C = 6160.760177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.030 3.970 3 H 0.052 0.948 4 C -0.500 4.500 5 H 0.074 0.926 6 C 0.057 3.943 7 N -0.897 5.897 8 Si 0.900 3.100 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.521 3.479 13 O -0.546 6.546 14 N -0.741 5.741 15 C 0.195 3.805 16 C 0.053 3.947 17 C -0.235 4.235 18 S 0.112 5.888 19 C 0.021 3.979 20 N -0.457 5.457 21 H 0.031 0.969 22 H 0.093 0.907 23 H 0.011 0.989 24 H 0.260 0.740 25 H 0.397 0.603 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.181 0.819 29 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.805 3.452 -18.585 18.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.009 3.991 3 H 0.070 0.930 4 C -0.538 4.538 5 H 0.093 0.907 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.197 1.197 12 C 0.311 3.689 13 O -0.422 6.422 14 N -0.396 5.396 15 C 0.069 3.931 16 C -0.079 4.079 17 C -0.375 4.375 18 S 0.364 5.636 19 C -0.277 4.277 20 N -0.170 5.170 21 H 0.051 0.949 22 H 0.111 0.889 23 H 0.030 0.970 24 H 0.070 0.930 25 H 0.230 0.770 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.198 0.802 29 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -0.627 3.142 -18.950 19.219 hybrid contribution 0.211 -0.369 1.334 1.400 sum -0.416 2.773 -17.616 17.838 Atomic orbital electron populations 1.21735 0.96487 0.99883 1.00869 1.18872 0.94182 0.96808 0.89214 0.93021 1.21158 1.30885 1.12803 0.88987 0.90740 1.24955 0.95129 0.95103 0.99116 1.69879 1.37131 1.23197 1.23488 0.86447 0.78400 0.80282 0.82052 1.20693 1.21321 1.19736 1.22010 0.78394 0.84285 0.84223 1.90533 1.38131 1.26826 1.86671 1.46281 1.55657 1.32665 1.04955 1.19599 0.98327 0.95670 0.79553 1.20484 0.89858 0.98015 0.99505 1.27006 1.06418 1.03956 1.00106 1.84017 1.10172 1.41327 1.28105 1.28456 1.04162 0.97500 0.97614 1.66167 1.16588 1.24796 1.09439 0.94944 0.88855 0.96970 0.92998 0.76975 0.90388 0.90358 0.80150 0.78319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 8.86 37.16 0.33 -2.80 15 2 C 0.03 0.77 2.64 -92.92 -0.25 0.53 15 3 H 0.05 1.35 8.14 -51.93 -0.42 0.93 15 4 C -0.50 -14.42 8.37 -34.44 -0.29 -14.71 15 5 H 0.07 2.26 6.75 -52.49 -0.35 1.91 15 6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 15 7 N -0.90 -25.53 11.32 55.43 0.63 -24.91 15 8 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 15 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 15 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 15 11 H -0.27 -6.73 7.11 56.52 0.40 -6.33 15 12 C 0.52 12.18 7.15 -10.98 -0.08 12.10 15 13 O -0.55 -14.47 15.46 5.55 0.09 -14.39 15 14 N -0.74 -13.57 5.44 -61.47 -0.33 -13.90 15 15 C 0.20 3.08 6.11 -5.20 -0.03 3.05 15 16 C 0.05 0.71 6.11 -84.23 -0.51 0.19 15 17 C -0.23 -2.49 11.11 29.12 0.32 -2.17 15 18 S 0.11 0.93 23.22 -107.50 -2.50 -1.56 15 19 C 0.02 0.21 12.23 51.59 0.63 0.84 15 20 N -0.46 -6.12 10.53 -11.90 -0.13 -6.24 15 21 H 0.03 0.77 8.14 -51.93 -0.42 0.35 15 22 H 0.09 2.42 6.07 -51.93 -0.32 2.10 15 23 H 0.01 0.23 7.55 -51.93 -0.39 -0.16 15 24 H 0.26 7.06 8.31 -40.82 -0.34 6.72 15 25 H 0.40 6.63 7.87 -40.82 -0.32 6.31 15 26 H 0.08 1.17 8.10 -51.93 -0.42 0.75 15 27 H 0.08 1.34 8.14 -51.93 -0.42 0.92 15 28 H 0.18 1.59 8.06 -52.49 -0.42 1.17 15 29 H 0.20 1.23 8.06 -52.49 -0.42 0.81 15 LS Contribution 269.92 15.07 4.07 4.07 Total: -1.00 -32.52 269.92 -6.22 -38.74 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -3.05 Total: 2.57 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: 0.03 Total: -1.44 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: 0.17 Total: -45.05 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: 0.09 Total: -14.39 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 16 Polarization: 0.93 SS G_CDS: -2.50 Total: -1.56 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -32.52 -6.22 -38.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597008666.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.227 kcal (2) G-P(sol) polarization free energy of solvation -32.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds