Wall clock time and date at job start Mon Mar 30 2020 04:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50700 * 109.47313 * 120.00230 * 2 1 3 5 5 H 1.07997 * 120.00357 * 119.99585 * 4 2 1 6 6 C 1.37876 * 119.99656 * 299.99978 * 4 2 1 7 7 N 1.31514 * 119.99993 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99954 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.46976 * 89.99956 * 8 6 4 10 10 H 1.48495 * 109.47491 * 209.99845 * 8 6 4 11 11 H 1.48503 * 109.47229 * 330.00587 * 8 6 4 12 12 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 13 13 O 1.21283 * 120.00262 * 240.00295 * 12 2 1 14 14 N 1.34777 * 119.99928 * 59.72201 * 12 2 1 15 15 C 1.46499 * 120.00199 * 180.27479 * 14 12 2 16 16 C 1.50694 * 109.47550 * 180.02562 * 15 14 12 17 17 C 1.33643 * 122.75007 * 94.99805 * 16 15 14 18 18 S 1.76202 * 107.92536 * 180.02562 * 17 16 15 19 19 C 1.70974 * 90.28128 * 0.02562 * 18 17 16 20 20 N 1.29029 * 110.17100 * 359.73008 * 19 18 17 21 21 H 1.08996 * 109.46783 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 23 23 H 1.09001 * 109.46739 * 59.99706 * 1 2 3 24 24 H 0.97009 * 119.99880 * 180.02562 * 7 6 4 25 25 H 0.97000 * 120.00317 * 0.28382 * 14 12 2 26 26 H 1.08998 * 109.47134 * 300.00670 * 15 14 12 27 27 H 1.09002 * 109.46857 * 59.99862 * 15 14 12 28 28 H 1.07997 * 126.03558 * 0.02562 * 17 16 15 29 29 H 1.08002 * 124.91542 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6033 8 14 2.3214 -1.1204 4.0079 9 1 3.6298 -0.5459 4.4123 10 1 1.3432 -0.9493 5.1120 11 1 2.4860 -2.5662 3.7118 12 6 2.0324 -0.7104 -1.2305 13 8 2.7296 -1.6965 -1.1193 14 7 1.7022 -0.2532 -2.4546 15 6 2.1855 -0.9472 -3.6507 16 6 1.6792 -0.2397 -4.8812 17 6 2.3969 0.6800 -5.5331 18 16 1.4390 1.2475 -6.8988 19 6 0.1685 0.1922 -6.4569 20 7 0.4941 -0.4802 -5.4050 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 0.7087 1.1612 3.4844 25 1 1.1446 0.5355 -2.5436 26 1 3.2755 -0.9477 -3.6550 27 1 1.8218 -1.9748 -3.6465 28 1 3.3888 1.0161 -5.2694 29 1 -0.7690 0.0983 -6.9850 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597008666.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:41 Heat of formation + Delta-G solvation = -20.201813 kcal Electronic energy + Delta-G solvation = -14502.190146 eV Core-core repulsion = 11937.179554 eV Total energy + Delta-G solvation = -2565.010593 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.12802 -40.21454 -35.84487 -35.64287 -32.76884 -31.49896 -27.98127 -27.19023 -25.71742 -24.08661 -21.23306 -20.62672 -19.23718 -18.32567 -17.74843 -16.99346 -16.72030 -16.19659 -15.97983 -15.26057 -14.70585 -14.61544 -14.29191 -14.10899 -13.74841 -13.39171 -12.97287 -12.72119 -12.60915 -12.35834 -12.20164 -12.01235 -11.05153 -10.68915 -10.62547 -10.47612 -10.37906 -10.03817 -9.82631 -8.15076 -6.25675 -0.26277 0.45705 0.74548 1.41261 1.41822 1.53472 1.59407 1.90123 2.41374 2.68040 3.14398 3.21131 3.95377 4.15294 4.31349 4.42713 4.61199 4.71344 4.75683 4.93593 5.00543 5.04480 5.48129 5.49315 5.73820 5.92221 6.19706 6.68605 6.75959 6.84727 7.38796 7.50304 8.90985 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.058452 B = 0.004681 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.907609 B = 5979.930053 C = 6160.760177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.025 3.975 3 H 0.043 0.957 4 C -0.530 4.530 5 H 0.050 0.950 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.957 3.043 9 H -0.273 1.273 10 H -0.274 1.274 11 H -0.279 1.279 12 C 0.523 3.477 13 O -0.585 6.585 14 N -0.720 5.720 15 C 0.198 3.802 16 C 0.029 3.971 17 C -0.238 4.238 18 S 0.188 5.812 19 C 0.016 3.984 20 N -0.500 5.500 21 H 0.021 0.979 22 H 0.073 0.927 23 H 0.046 0.954 24 H 0.265 0.735 25 H 0.407 0.593 26 H 0.084 0.916 27 H 0.060 0.940 28 H 0.196 0.804 29 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.116 4.592 -20.129 20.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.004 3.996 3 H 0.061 0.939 4 C -0.568 4.568 5 H 0.068 0.932 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.783 3.217 9 H -0.198 1.198 10 H -0.199 1.199 11 H -0.204 1.204 12 C 0.312 3.688 13 O -0.464 6.464 14 N -0.373 5.373 15 C 0.072 3.928 16 C -0.103 4.103 17 C -0.379 4.379 18 S 0.441 5.559 19 C -0.282 4.282 20 N -0.215 5.215 21 H 0.040 0.960 22 H 0.091 0.909 23 H 0.065 0.935 24 H 0.074 0.926 25 H 0.242 0.758 26 H 0.102 0.898 27 H 0.078 0.922 28 H 0.213 0.787 29 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -0.965 4.326 -20.544 21.016 hybrid contribution 0.290 -0.633 1.654 1.794 sum -0.675 3.692 -18.890 19.259 Atomic orbital electron populations 1.21547 0.95246 0.99327 1.01518 1.18807 0.95162 0.96064 0.89547 0.93880 1.21297 1.31647 1.12790 0.91069 0.93203 1.25618 0.95153 0.95772 1.01482 1.69954 1.37154 1.23665 1.24346 0.85566 0.78417 0.78749 0.78980 1.19844 1.19935 1.20394 1.21568 0.78191 0.83710 0.85295 1.90508 1.40035 1.28465 1.87425 1.45995 1.54437 1.32402 1.04463 1.19580 0.98635 0.94896 0.79722 1.20056 0.91021 0.99723 0.99474 1.27283 1.07125 1.02803 1.00697 1.83807 1.07760 1.39036 1.25341 1.28992 1.05690 0.96872 0.96629 1.66118 1.17142 1.26802 1.11401 0.95970 0.90874 0.93510 0.92563 0.75813 0.89816 0.92202 0.78672 0.75346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.63 8.86 71.98 0.64 -4.99 15 2 C 0.03 1.31 2.64 -12.29 -0.03 1.28 15 3 H 0.04 2.29 8.14 -2.38 -0.02 2.27 15 4 C -0.53 -31.31 8.37 25.60 0.21 -31.09 15 5 H 0.05 3.14 6.75 -2.91 -0.02 3.12 15 6 C 0.02 1.07 5.30 84.65 0.45 1.52 15 7 N -0.91 -51.89 11.32 21.45 0.24 -51.64 15 8 Si 0.96 45.52 29.54 68.60 2.03 47.54 15 9 H -0.27 -12.57 7.11 99.48 0.71 -11.86 15 10 H -0.27 -12.39 7.11 99.48 0.71 -11.68 15 11 H -0.28 -13.45 7.11 99.48 0.71 -12.74 15 12 C 0.52 24.91 7.15 87.66 0.63 25.54 15 13 O -0.58 -32.00 15.46 -3.04 -0.05 -32.05 15 14 N -0.72 -26.29 5.44 -466.79 -2.54 -28.83 15 15 C 0.20 6.25 6.11 85.63 0.52 6.78 15 16 C 0.03 0.74 6.11 41.52 0.25 0.99 15 17 C -0.24 -4.51 11.11 66.78 0.74 -3.77 15 18 S 0.19 2.47 23.22 -56.49 -1.31 1.16 15 19 C 0.02 0.26 12.23 130.65 1.60 1.86 15 20 N -0.50 -12.68 10.53 -191.55 -2.02 -14.69 15 21 H 0.02 1.05 8.14 -2.39 -0.02 1.03 15 22 H 0.07 3.79 6.07 -2.39 -0.01 3.78 15 23 H 0.05 1.84 7.55 -2.39 -0.02 1.82 15 24 H 0.27 14.24 8.31 -92.70 -0.77 13.47 15 25 H 0.41 13.21 7.87 -92.71 -0.73 12.48 15 26 H 0.08 2.53 8.10 -2.39 -0.02 2.51 15 27 H 0.06 2.11 8.14 -2.39 -0.02 2.09 15 28 H 0.20 2.95 8.06 -2.91 -0.02 2.92 15 29 H 0.23 2.05 8.06 -2.91 -0.02 2.02 15 Total: -1.00 -70.98 269.92 1.81 -69.17 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 0.44 Total: 11.23 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: 5.01 Total: -1.89 kcal Atomic # 7 Polarization: -90.85 SS G_CDS: -4.31 Total: -95.17 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -0.05 Total: -32.05 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.54 kcal Atomic # 16 Polarization: 2.47 SS G_CDS: -1.31 Total: 1.16 kcal Total: -70.98 1.81 -69.17 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597008666.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.966 kcal (2) G-P(sol) polarization free energy of solvation -70.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds