Wall clock time and date at job start Mon Mar 30 2020 04:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46872 * 59.99743 * 8 6 4 10 10 H 1.48503 * 109.47008 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46914 * 299.99916 * 8 6 4 12 12 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 13 13 O 1.21282 * 119.99544 * 119.99884 * 12 2 1 14 14 N 1.34774 * 120.00011 * 300.00244 * 12 2 1 15 15 C 1.46502 * 120.00006 * 359.97438 * 14 12 2 16 16 C 1.38995 * 119.99814 * 179.97438 * 14 12 2 17 17 N 1.29626 * 124.94749 * 359.69641 * 16 14 12 18 18 C 1.31984 * 116.91995 * 179.81601 * 17 16 14 19 19 C 1.33447 * 114.56663 * 0.47323 * 18 17 16 20 20 S 1.70966 * 124.94456 * 180.02562 * 16 14 12 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 24 24 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 25 25 H 1.09005 * 109.46966 * 89.99945 * 15 14 12 26 26 H 1.09001 * 109.47307 * 210.00012 * 15 14 12 27 27 H 1.09000 * 109.47042 * 329.99997 * 15 14 12 28 28 H 1.07997 * 122.71850 * 180.21931 * 18 17 16 29 29 H 1.08006 * 125.96611 * 179.72230 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0076 10 1 1.8261 -0.4206 -5.2204 11 1 3.8064 -1.1209 -4.0080 12 6 2.0323 -0.7104 1.2306 13 8 2.7296 -1.6965 1.1192 14 7 1.7067 -0.2499 2.4546 15 6 0.8649 0.9416 2.5890 16 6 2.1696 -0.9054 3.5895 17 7 2.9130 -1.9673 3.5824 18 6 3.2653 -2.4580 4.7559 19 6 2.7891 -1.7841 5.8046 20 16 1.8348 -0.4331 5.1982 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 0.7089 1.1612 -3.4844 25 1 -0.1833 0.6440 2.6221 26 1 1.1227 1.4668 3.5086 27 1 1.0288 1.6003 1.7362 28 1 3.8852 -3.3363 4.8590 29 1 2.9584 -2.0254 6.8437 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597197339.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:04 Heat of formation + Delta-G solvation = 30.315682 kcal Electronic energy + Delta-G solvation = -15087.595958 eV Core-core repulsion = 12524.775969 eV Total energy + Delta-G solvation = -2562.819990 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.10790 -38.45527 -35.24233 -33.90732 -30.88030 -29.28452 -26.76820 -25.26347 -25.05947 -22.52211 -20.86820 -18.49687 -17.86438 -16.46910 -15.85226 -15.68417 -15.34472 -14.75256 -14.39357 -13.62009 -13.42054 -13.05890 -13.04038 -12.49607 -12.17521 -11.45474 -11.23537 -11.02563 -10.82219 -10.60160 -10.40577 -10.02721 -10.00180 -9.50805 -9.10790 -9.03952 -8.58327 -8.34855 -7.80336 -6.09560 -4.13153 1.01896 1.26168 1.88118 3.08554 3.09937 3.34721 3.36691 3.43722 3.69318 4.41675 4.80803 5.20499 5.23972 5.35238 5.51400 5.61057 5.76336 5.80180 6.19223 6.51244 6.68346 6.73621 6.86333 7.29945 7.49216 7.73755 7.95885 8.12735 8.28860 8.93784 8.97544 9.52641 10.98021 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.047516 B = 0.006539 C = 0.005856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.136538 B = 4281.274860 C = 4779.973359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.040 3.960 3 H 0.057 0.943 4 C -0.505 4.505 5 H 0.074 0.926 6 C 0.061 3.939 7 N -0.896 5.896 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.509 3.491 13 O -0.470 6.470 14 N -0.536 5.536 15 C 0.073 3.927 16 C 0.297 3.703 17 N -0.491 5.491 18 C 0.077 3.923 19 C -0.301 4.301 20 S 0.084 5.916 21 H 0.032 0.968 22 H 0.097 0.903 23 H 0.025 0.975 24 H 0.263 0.737 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.103 0.897 28 H 0.173 0.827 29 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.380 1.537 14.539 14.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.018 3.982 3 H 0.075 0.925 4 C -0.543 4.543 5 H 0.093 0.907 6 C -0.140 4.140 7 N -0.535 5.535 8 Si 0.731 3.269 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.201 1.201 12 C 0.298 3.702 13 O -0.336 6.336 14 N -0.267 5.267 15 C -0.070 4.070 16 C -0.070 4.070 17 N -0.213 5.213 18 C -0.075 4.075 19 C -0.441 4.441 20 S 0.333 5.667 21 H 0.051 0.949 22 H 0.115 0.885 23 H 0.043 0.957 24 H 0.072 0.928 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.122 0.878 28 H 0.190 0.810 29 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -1.505 1.700 14.116 14.297 hybrid contribution 0.787 -1.134 -0.589 1.501 sum -0.718 0.565 13.527 13.557 Atomic orbital electron populations 1.22039 0.96182 1.00376 1.01852 1.18921 0.94461 0.96737 0.88060 0.92502 1.21081 1.31408 1.13053 0.88799 0.90738 1.24920 0.94940 0.95027 0.99100 1.69841 1.36818 1.22979 1.23847 0.86465 0.79348 0.79739 0.81388 1.20119 1.21297 1.20100 1.22706 0.79266 0.85132 0.83093 1.90652 1.33794 1.24562 1.84629 1.46103 1.49484 1.27984 1.03146 1.22278 0.94630 0.86216 1.03850 1.24233 0.96825 0.93870 0.92112 1.66628 1.16375 1.10845 1.27470 1.21695 0.99820 1.00651 0.85297 1.26625 1.11099 1.02194 1.04196 1.83673 1.52179 1.31111 0.99755 0.94893 0.88479 0.95655 0.92760 0.90723 0.91462 0.87810 0.80976 0.80927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 8.61 37.16 0.32 -2.92 15 2 C 0.04 0.97 1.83 -92.92 -0.17 0.80 15 3 H 0.06 1.40 7.40 -51.93 -0.38 1.02 15 4 C -0.51 -14.21 8.37 -34.44 -0.29 -14.50 15 5 H 0.07 2.23 6.75 -52.49 -0.35 1.88 15 6 C 0.06 1.68 5.30 -17.82 -0.09 1.58 15 7 N -0.90 -24.50 11.32 55.43 0.63 -23.87 15 8 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 15 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 15 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 12 C 0.51 12.09 7.03 -10.98 -0.08 12.01 15 13 O -0.47 -12.89 14.09 5.56 0.08 -12.81 15 14 N -0.54 -10.25 3.07 -124.80 -0.38 -10.63 15 15 C 0.07 1.02 8.49 59.85 0.51 1.53 15 16 C 0.30 5.48 7.68 -87.35 -0.67 4.81 15 17 N -0.49 -9.89 8.65 -15.12 -0.13 -10.03 15 18 C 0.08 1.18 11.34 -19.16 -0.22 0.96 15 19 C -0.30 -3.78 11.35 29.06 0.33 -3.45 15 20 S 0.08 1.12 21.70 -107.50 -2.33 -1.22 15 21 H 0.03 0.74 8.14 -51.93 -0.42 0.32 15 22 H 0.10 2.35 6.07 -51.93 -0.32 2.03 15 23 H 0.02 0.44 4.53 -51.93 -0.24 0.21 15 24 H 0.26 6.88 8.31 -40.82 -0.34 6.54 15 25 H 0.07 0.94 6.95 -51.93 -0.36 0.58 15 26 H 0.07 0.75 7.05 -51.93 -0.37 0.39 15 27 H 0.10 1.48 6.01 -51.93 -0.31 1.16 15 28 H 0.17 2.14 8.06 -52.49 -0.42 1.71 15 29 H 0.17 1.55 8.06 -52.48 -0.42 1.13 15 LS Contribution 257.03 15.07 3.87 3.87 Total: -1.00 -32.62 257.03 -6.38 -39.00 By element: Atomic # 1 Polarization: 0.89 SS G_CDS: -2.73 Total: -1.84 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -0.36 Total: 0.83 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: 0.11 Total: -44.53 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.08 Total: -12.81 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.33 Total: -1.22 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -32.62 -6.38 -39.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597197339.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.315 kcal (2) G-P(sol) polarization free energy of solvation -32.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds