Wall clock time and date at job start Mon Mar 30 2020 04:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46872 * 59.99743 * 8 6 4 10 10 H 1.48503 * 109.47008 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46914 * 299.99916 * 8 6 4 12 12 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 13 13 O 1.21282 * 119.99544 * 119.99884 * 12 2 1 14 14 N 1.34774 * 120.00011 * 300.00244 * 12 2 1 15 15 C 1.46502 * 120.00006 * 359.97438 * 14 12 2 16 16 C 1.38995 * 119.99814 * 179.97438 * 14 12 2 17 17 N 1.29626 * 124.94749 * 359.69641 * 16 14 12 18 18 C 1.31984 * 116.91995 * 179.81601 * 17 16 14 19 19 C 1.33447 * 114.56663 * 0.47323 * 18 17 16 20 20 S 1.70966 * 124.94456 * 180.02562 * 16 14 12 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 24 24 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 25 25 H 1.09005 * 109.46966 * 89.99945 * 15 14 12 26 26 H 1.09001 * 109.47307 * 210.00012 * 15 14 12 27 27 H 1.09000 * 109.47042 * 329.99997 * 15 14 12 28 28 H 1.07997 * 122.71850 * 180.21931 * 18 17 16 29 29 H 1.08006 * 125.96611 * 179.72230 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0076 10 1 1.8261 -0.4206 -5.2204 11 1 3.8064 -1.1209 -4.0080 12 6 2.0323 -0.7104 1.2306 13 8 2.7296 -1.6965 1.1192 14 7 1.7067 -0.2499 2.4546 15 6 0.8649 0.9416 2.5890 16 6 2.1696 -0.9054 3.5895 17 7 2.9130 -1.9673 3.5824 18 6 3.2653 -2.4580 4.7559 19 6 2.7891 -1.7841 5.8046 20 16 1.8348 -0.4331 5.1982 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 0.7089 1.1612 -3.4844 25 1 -0.1833 0.6440 2.6221 26 1 1.1227 1.4668 3.5086 27 1 1.0288 1.6003 1.7362 28 1 3.8852 -3.3363 4.8590 29 1 2.9584 -2.0254 6.8437 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597197339.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:04 Heat of formation + Delta-G solvation = 8.554241 kcal Electronic energy + Delta-G solvation = -15088.539605 eV Core-core repulsion = 12524.775969 eV Total energy + Delta-G solvation = -2563.763636 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 4.57 seconds Orbital eigenvalues (eV) -41.57955 -39.88495 -36.80923 -35.87098 -32.73479 -30.58314 -28.07956 -27.19649 -26.52094 -24.11945 -22.32688 -19.85849 -19.25235 -18.39234 -17.39482 -17.28879 -16.87252 -16.38702 -15.75049 -15.14790 -15.00810 -14.56648 -14.27997 -14.07113 -13.71578 -13.13825 -12.98333 -12.75350 -12.48400 -12.27549 -12.21532 -12.04017 -11.39433 -11.05465 -10.97224 -10.53115 -10.21917 -10.05414 -9.06935 -8.18488 -6.28718 -0.18489 0.08031 0.77505 1.39938 1.41154 1.49728 1.67366 1.81378 2.16977 2.42403 3.11264 3.53448 4.04285 4.16586 4.44106 4.47795 4.60800 4.63599 4.75719 4.91353 4.99094 5.08796 5.36310 5.47271 5.70228 5.82824 6.06126 6.26453 6.76473 6.98568 7.26877 7.40667 8.87083 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.047516 B = 0.006539 C = 0.005856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.136538 B = 4281.274860 C = 4779.973359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.038 3.962 3 H 0.053 0.947 4 C -0.536 4.536 5 H 0.043 0.957 6 C 0.026 3.974 7 N -0.905 5.905 8 Si 0.954 3.046 9 H -0.279 1.279 10 H -0.270 1.270 11 H -0.278 1.278 12 C 0.510 3.490 13 O -0.525 6.525 14 N -0.538 5.538 15 C 0.063 3.937 16 C 0.240 3.760 17 N -0.544 5.544 18 C 0.039 3.961 19 C -0.270 4.270 20 S 0.179 5.821 21 H 0.016 0.984 22 H 0.077 0.923 23 H 0.071 0.929 24 H 0.267 0.733 25 H 0.093 0.907 26 H 0.101 0.899 27 H 0.099 0.901 28 H 0.190 0.810 29 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.192 2.479 16.963 17.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.016 3.984 3 H 0.070 0.930 4 C -0.574 4.574 5 H 0.062 0.938 6 C -0.174 4.174 7 N -0.544 5.544 8 Si 0.779 3.221 9 H -0.204 1.204 10 H -0.195 1.195 11 H -0.204 1.204 12 C 0.299 3.701 13 O -0.397 6.397 14 N -0.268 5.268 15 C -0.078 4.078 16 C -0.125 4.125 17 N -0.267 5.267 18 C -0.110 4.110 19 C -0.410 4.410 20 S 0.428 5.572 21 H 0.035 0.965 22 H 0.096 0.904 23 H 0.089 0.911 24 H 0.077 0.923 25 H 0.112 0.888 26 H 0.119 0.881 27 H 0.118 0.882 28 H 0.206 0.794 29 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -2.347 2.686 16.592 16.971 hybrid contribution 1.048 -1.407 -1.097 2.069 sum -1.299 1.279 15.495 15.602 Atomic orbital electron populations 1.21866 0.94403 0.99622 1.03084 1.18810 0.95806 0.95927 0.87820 0.92970 1.21208 1.32107 1.12930 0.91174 0.93822 1.25502 0.95041 0.95714 1.01095 1.69899 1.36685 1.23209 1.24582 0.85684 0.78623 0.78726 0.79028 1.20441 1.19473 1.20375 1.22352 0.78726 0.84391 0.84664 1.90609 1.36296 1.26784 1.85975 1.45738 1.49745 1.28945 1.02399 1.22575 0.94962 0.84777 1.05452 1.24415 0.98959 0.95083 0.94088 1.66545 1.17094 1.12217 1.30864 1.21975 1.01863 1.02341 0.84867 1.27300 1.07720 1.00382 1.05629 1.83249 1.50063 1.29501 0.94416 0.96482 0.90449 0.91094 0.92334 0.88822 0.88089 0.88233 0.79362 0.76550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.87 8.61 71.98 0.62 -5.25 15 2 C 0.04 1.91 1.83 -12.29 -0.02 1.89 15 3 H 0.05 2.65 7.40 -2.39 -0.02 2.63 15 4 C -0.54 -31.45 8.37 25.60 0.21 -31.24 15 5 H 0.04 2.78 6.75 -2.91 -0.02 2.76 15 6 C 0.03 1.48 5.30 84.66 0.45 1.93 15 7 N -0.91 -49.79 11.32 21.45 0.24 -49.54 15 8 Si 0.95 45.23 29.54 68.60 2.03 47.26 15 9 H -0.28 -13.28 7.11 99.48 0.71 -12.57 15 10 H -0.27 -11.97 7.11 99.48 0.71 -11.27 15 11 H -0.28 -13.22 7.11 99.48 0.71 -12.52 15 12 C 0.51 25.09 7.03 87.66 0.62 25.70 15 13 O -0.53 -30.51 14.09 -3.04 -0.04 -30.55 15 14 N -0.54 -20.41 3.07 -667.14 -2.05 -22.47 15 15 C 0.06 1.62 8.49 127.77 1.08 2.71 15 16 C 0.24 8.64 7.68 179.21 1.38 10.01 15 17 N -0.54 -22.06 8.65 -201.76 -1.75 -23.80 15 18 C 0.04 1.15 11.34 83.58 0.95 2.10 15 19 C -0.27 -5.70 11.35 66.73 0.76 -4.95 15 20 S 0.18 4.03 21.70 -56.49 -1.23 2.81 15 21 H 0.02 0.76 8.14 -2.39 -0.02 0.74 15 22 H 0.08 3.76 6.07 -2.39 -0.01 3.74 15 23 H 0.07 2.42 4.53 -2.38 -0.01 2.41 15 24 H 0.27 13.91 8.31 -92.71 -0.77 13.14 15 25 H 0.09 2.06 6.95 -2.38 -0.02 2.04 15 26 H 0.10 1.90 7.05 -2.39 -0.02 1.88 15 27 H 0.10 2.68 6.01 -2.39 -0.01 2.66 15 28 H 0.19 4.51 8.06 -2.91 -0.02 4.49 15 29 H 0.22 2.57 8.06 -2.91 -0.02 2.55 15 Total: -1.00 -75.11 257.03 4.42 -70.69 By element: Atomic # 1 Polarization: 1.53 SS G_CDS: 1.17 Total: 2.70 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: 6.04 Total: 2.91 kcal Atomic # 7 Polarization: -92.26 SS G_CDS: -3.55 Total: -95.81 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: -0.04 Total: -30.55 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Atomic # 16 Polarization: 4.03 SS G_CDS: -1.23 Total: 2.81 kcal Total: -75.11 4.42 -70.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597197339.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.241 kcal (2) G-P(sol) polarization free energy of solvation -75.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.57 seconds