Wall clock time and date at job start Mon Mar 30 2020 03:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31868 * 122.84508 * 2 1 4 4 C 1.28923 * 117.19030 * 180.02562 * 3 2 1 5 5 S 1.70960 * 110.31555 * 359.72787 * 4 3 2 6 6 C 1.34363 * 122.85066 * 180.02562 * 2 1 3 7 7 N 1.39795 * 126.06505 * 359.96903 * 6 2 1 8 8 C 1.34773 * 119.99605 * 180.02562 * 7 6 2 9 9 O 1.21305 * 120.00437 * 359.73198 * 8 7 6 10 10 C 1.50706 * 120.00081 * 180.02562 * 8 7 6 11 11 H 1.09001 * 109.46564 * 299.73030 * 10 8 7 12 12 C 1.52997 * 109.46859 * 59.72378 * 10 8 7 13 13 C 1.50696 * 109.47259 * 179.72770 * 10 8 7 14 14 H 1.08002 * 120.00318 * 359.97438 * 13 10 8 15 15 C 1.37879 * 119.99922 * 179.97438 * 13 10 8 16 16 N 1.31513 * 119.99824 * 0.02562 * 15 13 10 17 17 Si 1.86802 * 119.99920 * 179.97438 * 15 13 10 18 18 H 1.48502 * 109.47212 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46550 * 120.00565 * 17 15 13 20 20 H 1.48492 * 109.47285 * 240.00185 * 17 15 13 21 21 H 1.09003 * 109.47292 * 269.97424 * 1 2 3 22 22 H 1.08997 * 109.47335 * 29.97375 * 1 2 3 23 23 H 1.08999 * 109.47260 * 149.97436 * 1 2 3 24 24 H 1.07996 * 124.84555 * 180.02562 * 4 3 2 25 25 H 0.96998 * 119.99870 * 0.02562 * 7 6 2 26 26 H 1.08995 * 109.47505 * 300.00432 * 12 10 8 27 27 H 1.09001 * 109.47000 * 60.00919 * 12 10 8 28 28 H 1.09002 * 109.46917 * 180.02562 * 12 10 8 29 29 H 0.97005 * 119.99648 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2222 1.1079 0.0000 4 6 3.5051 0.9808 -0.0005 5 16 3.9378 -0.6731 0.0065 6 6 2.2358 -1.1288 -0.0005 7 7 1.7329 -2.4331 -0.0005 8 6 2.5796 -3.4817 -0.0005 9 8 3.7780 -3.2937 -0.0055 10 6 2.0376 -4.8879 -0.0011 11 1 1.4311 -5.0438 0.8911 12 6 1.1760 -5.1018 -1.2471 13 6 3.1826 -5.8676 -0.0077 14 1 4.2010 -5.5081 -0.0116 15 6 2.9300 -7.2231 -0.0088 16 7 1.6899 -7.6609 -0.0046 17 14 4.3494 -8.4376 -0.0178 18 1 5.6357 -7.6956 -0.0222 19 1 4.2760 -9.2934 1.1936 20 1 4.2645 -9.2891 -1.2313 21 1 -0.3634 -0.0005 1.0277 22 1 -0.3634 0.8902 -0.5134 23 1 -0.3634 -0.8897 -0.5142 24 1 4.2065 1.8020 -0.0002 25 1 0.7746 -2.5834 -0.0004 26 1 0.3478 -4.3932 -1.2423 27 1 1.7824 -4.9459 -2.1393 28 1 0.7835 -6.1187 -1.2473 29 1 1.5123 -8.6146 -0.0057 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597387026.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:27 Heat of formation + Delta-G solvation = -1.842599 kcal Electronic energy + Delta-G solvation = -14818.634464 eV Core-core repulsion = 12254.419987 eV Total energy + Delta-G solvation = -2564.214477 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 3.65 seconds Orbital eigenvalues (eV) -39.97396 -38.90487 -34.57925 -33.99509 -31.23207 -30.40064 -26.85403 -25.30503 -24.44647 -22.87597 -20.29380 -19.48217 -17.53111 -16.89398 -16.34363 -15.55976 -15.15615 -14.78465 -14.11026 -13.81318 -13.29183 -13.23257 -12.75746 -12.44547 -12.33345 -11.81239 -11.18724 -11.03001 -10.96463 -10.85830 -10.74043 -10.42479 -10.13498 -9.43641 -9.14815 -8.91331 -8.71012 -8.50924 -7.74544 -6.17261 -4.21808 1.04079 1.45055 2.16837 2.89365 3.24989 3.32941 3.38230 3.44341 3.49882 4.36562 4.52726 5.16617 5.19168 5.34534 5.61956 5.68602 5.82689 5.97507 6.28963 6.42340 6.60317 6.64420 6.71622 7.23884 7.50852 7.67251 7.89839 8.00650 8.11267 8.66877 8.87470 9.44646 10.90382 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.043344 B = 0.006397 C = 0.005675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.842338 B = 4375.680887 C = 4932.845816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.022 4.022 3 N -0.448 5.448 4 C -0.067 4.067 5 S 0.230 5.770 6 C 0.024 3.976 7 N -0.640 5.640 8 C 0.510 3.490 9 O -0.506 6.506 10 C 0.037 3.963 11 H 0.060 0.940 12 C -0.136 4.136 13 C -0.507 4.507 14 H 0.077 0.923 15 C 0.061 3.939 16 N -0.894 5.894 17 Si 0.902 3.098 18 H -0.270 1.270 19 H -0.283 1.283 20 H -0.283 1.283 21 H 0.068 0.932 22 H 0.073 0.927 23 H 0.065 0.935 24 H 0.191 0.809 25 H 0.416 0.584 26 H 0.013 0.987 27 H 0.034 0.966 28 H 0.099 0.901 29 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.761 11.409 -0.298 11.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.158 4.158 3 N -0.161 5.161 4 C -0.365 4.365 5 S 0.479 5.521 6 C -0.196 4.196 7 N -0.286 5.286 8 C 0.301 3.699 9 O -0.380 6.380 10 C 0.016 3.984 11 H 0.078 0.922 12 C -0.194 4.194 13 C -0.545 4.545 14 H 0.095 0.905 15 C -0.141 4.141 16 N -0.533 5.533 17 Si 0.730 3.270 18 H -0.195 1.195 19 H -0.209 1.209 20 H -0.209 1.209 21 H 0.087 0.913 22 H 0.092 0.908 23 H 0.084 0.916 24 H 0.208 0.792 25 H 0.254 0.746 26 H 0.032 0.968 27 H 0.054 0.946 28 H 0.117 0.883 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.250 11.287 -0.292 11.294 hybrid contribution -0.738 -0.654 -0.013 0.986 sum -0.988 10.633 -0.305 10.683 Atomic orbital electron populations 1.20150 0.87541 1.02699 1.02310 1.19968 0.97926 0.85465 1.12439 1.66094 1.05467 1.30683 1.13905 1.28344 0.95518 1.03038 1.09580 1.84993 1.01303 0.98065 1.67734 1.23699 0.98131 0.89923 1.07816 1.43713 1.11508 1.01263 1.72125 1.22731 0.86537 0.88015 0.72651 1.90500 1.15869 1.84459 1.47150 1.18918 0.97693 0.84359 0.97439 0.92225 1.21804 0.96780 1.03784 0.97034 1.21123 0.92778 0.89784 1.50822 0.90492 1.24946 0.96038 0.98359 0.94722 1.69864 1.18286 1.14529 1.50603 0.86348 0.82459 0.80629 0.77565 1.19459 1.20933 1.20929 0.91297 0.90799 0.91612 0.79221 0.74581 0.96776 0.94637 0.88291 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.81 10.07 36.00 0.36 -0.45 15 2 C -0.02 -0.35 6.77 -83.95 -0.57 -0.92 15 3 N -0.45 -7.10 10.53 -11.75 -0.12 -7.22 15 4 C -0.07 -0.94 12.21 51.54 0.63 -0.31 15 5 S 0.23 3.73 20.47 -107.50 -2.20 1.53 15 6 C 0.02 0.41 7.18 -15.28 -0.11 0.30 15 7 N -0.64 -11.12 5.29 -10.60 -0.06 -11.18 15 8 C 0.51 10.94 7.12 -10.98 -0.08 10.87 15 9 O -0.51 -12.05 13.09 5.54 0.07 -11.97 15 10 C 0.04 0.86 2.64 -92.92 -0.25 0.62 15 11 H 0.06 1.43 8.14 -51.93 -0.42 1.00 15 12 C -0.14 -2.93 8.86 37.16 0.33 -2.60 15 13 C -0.51 -13.61 8.37 -34.44 -0.29 -13.90 15 14 H 0.08 2.18 6.75 -52.49 -0.35 1.82 15 15 C 0.06 1.61 5.30 -17.82 -0.09 1.52 15 16 N -0.89 -24.00 11.32 55.43 0.63 -23.37 15 17 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 15 18 H -0.27 -6.35 7.11 56.52 0.40 -5.95 15 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 21 H 0.07 0.75 8.14 -51.93 -0.42 0.33 15 22 H 0.07 0.83 8.14 -51.93 -0.42 0.41 15 23 H 0.07 0.70 7.21 -51.93 -0.37 0.32 15 24 H 0.19 1.96 8.06 -52.49 -0.42 1.54 15 25 H 0.42 6.04 7.02 -40.82 -0.29 5.75 15 26 H 0.01 0.24 7.55 -51.93 -0.39 -0.15 15 27 H 0.03 0.77 8.14 -51.93 -0.42 0.34 15 28 H 0.10 2.36 6.07 -51.93 -0.32 2.04 15 29 H 0.26 6.73 8.31 -40.82 -0.34 6.39 15 LS Contribution 263.63 15.07 3.97 3.97 Total: -1.00 -29.76 263.63 -5.76 -35.52 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -2.97 Total: 1.62 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: -0.06 Total: -4.87 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: 0.45 Total: -41.77 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.07 Total: -11.97 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 3.73 SS G_CDS: -2.20 Total: 1.53 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.76 -5.76 -35.52 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597387026.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.675 kcal (2) G-P(sol) polarization free energy of solvation -29.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.65 seconds