Wall clock time and date at job start Mon Mar 30 2020 03:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31868 * 122.84508 * 2 1 4 4 C 1.28923 * 117.19030 * 180.02562 * 3 2 1 5 5 S 1.70960 * 110.31555 * 359.72787 * 4 3 2 6 6 C 1.34363 * 122.85066 * 180.02562 * 2 1 3 7 7 N 1.39795 * 126.06505 * 359.96903 * 6 2 1 8 8 C 1.34773 * 119.99605 * 180.02562 * 7 6 2 9 9 O 1.21305 * 120.00437 * 359.73198 * 8 7 6 10 10 C 1.50706 * 120.00081 * 180.02562 * 8 7 6 11 11 H 1.09001 * 109.46564 * 299.73030 * 10 8 7 12 12 C 1.52997 * 109.46859 * 59.72378 * 10 8 7 13 13 C 1.50696 * 109.47259 * 179.72770 * 10 8 7 14 14 H 1.08002 * 120.00318 * 359.97438 * 13 10 8 15 15 C 1.37879 * 119.99922 * 179.97438 * 13 10 8 16 16 N 1.31513 * 119.99824 * 0.02562 * 15 13 10 17 17 Si 1.86802 * 119.99920 * 179.97438 * 15 13 10 18 18 H 1.48502 * 109.47212 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46550 * 120.00565 * 17 15 13 20 20 H 1.48492 * 109.47285 * 240.00185 * 17 15 13 21 21 H 1.09003 * 109.47292 * 269.97424 * 1 2 3 22 22 H 1.08997 * 109.47335 * 29.97375 * 1 2 3 23 23 H 1.08999 * 109.47260 * 149.97436 * 1 2 3 24 24 H 1.07996 * 124.84555 * 180.02562 * 4 3 2 25 25 H 0.96998 * 119.99870 * 0.02562 * 7 6 2 26 26 H 1.08995 * 109.47505 * 300.00432 * 12 10 8 27 27 H 1.09001 * 109.47000 * 60.00919 * 12 10 8 28 28 H 1.09002 * 109.46917 * 180.02562 * 12 10 8 29 29 H 0.97005 * 119.99648 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2222 1.1079 0.0000 4 6 3.5051 0.9808 -0.0005 5 16 3.9378 -0.6731 0.0065 6 6 2.2358 -1.1288 -0.0005 7 7 1.7329 -2.4331 -0.0005 8 6 2.5796 -3.4817 -0.0005 9 8 3.7780 -3.2937 -0.0055 10 6 2.0376 -4.8879 -0.0011 11 1 1.4311 -5.0438 0.8911 12 6 1.1760 -5.1018 -1.2471 13 6 3.1826 -5.8676 -0.0077 14 1 4.2010 -5.5081 -0.0116 15 6 2.9300 -7.2231 -0.0088 16 7 1.6899 -7.6609 -0.0046 17 14 4.3494 -8.4376 -0.0178 18 1 5.6357 -7.6956 -0.0222 19 1 4.2760 -9.2934 1.1936 20 1 4.2645 -9.2891 -1.2313 21 1 -0.3634 -0.0005 1.0277 22 1 -0.3634 0.8902 -0.5134 23 1 -0.3634 -0.8897 -0.5142 24 1 4.2065 1.8020 -0.0002 25 1 0.7746 -2.5834 -0.0004 26 1 0.3478 -4.3932 -1.2423 27 1 1.7824 -4.9459 -2.1393 28 1 0.7835 -6.1187 -1.2473 29 1 1.5123 -8.6146 -0.0057 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597387026.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:27 Heat of formation + Delta-G solvation = -21.814407 kcal Electronic energy + Delta-G solvation = -14819.500506 eV Core-core repulsion = 12254.419987 eV Total energy + Delta-G solvation = -2565.080520 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -41.38119 -40.32524 -36.05310 -35.89355 -32.82875 -31.83863 -28.10609 -27.23566 -25.65953 -24.54493 -21.85573 -20.82606 -18.91178 -18.46009 -18.02390 -17.14992 -16.61367 -16.55016 -15.58404 -15.25738 -14.74670 -14.55864 -14.40233 -13.64980 -13.39741 -13.28415 -13.02194 -12.77156 -12.65460 -12.38150 -12.21864 -12.14948 -12.08061 -11.09631 -10.91916 -10.54171 -10.32688 -9.97142 -9.03286 -8.18900 -6.29380 -0.21027 0.23068 0.95772 1.39631 1.42876 1.51472 1.54917 2.00363 2.03605 2.44544 3.12050 3.45266 4.02536 4.16154 4.33310 4.65416 4.70272 4.78398 4.85632 4.93922 4.96238 5.13709 5.40442 5.42474 5.70382 5.84538 6.09930 6.35763 6.78514 6.79269 7.08273 7.39695 8.87206 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.043344 B = 0.006397 C = 0.005675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.842338 B = 4375.680887 C = 4932.845816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.007 4.007 3 N -0.469 5.469 4 C -0.032 4.032 5 S 0.192 5.808 6 C -0.013 4.013 7 N -0.624 5.624 8 C 0.513 3.487 9 O -0.539 6.539 10 C 0.034 3.966 11 H 0.052 0.948 12 C -0.124 4.124 13 C -0.530 4.530 14 H 0.053 0.947 15 C 0.023 3.977 16 N -0.909 5.909 17 Si 0.955 3.045 18 H -0.278 1.278 19 H -0.276 1.276 20 H -0.275 1.275 21 H 0.083 0.917 22 H 0.084 0.916 23 H 0.080 0.920 24 H 0.230 0.770 25 H 0.429 0.571 26 H 0.054 0.946 27 H 0.025 0.975 28 H 0.076 0.924 29 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.452 12.712 -0.409 12.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.142 4.142 3 N -0.183 5.183 4 C -0.331 4.331 5 S 0.442 5.558 6 C -0.232 4.232 7 N -0.271 5.271 8 C 0.303 3.697 9 O -0.416 6.416 10 C 0.013 3.987 11 H 0.070 0.930 12 C -0.182 4.182 13 C -0.568 4.568 14 H 0.072 0.928 15 C -0.177 4.177 16 N -0.548 5.548 17 Si 0.781 3.219 18 H -0.203 1.203 19 H -0.201 1.201 20 H -0.201 1.201 21 H 0.101 0.899 22 H 0.103 0.897 23 H 0.098 0.902 24 H 0.246 0.754 25 H 0.270 0.730 26 H 0.073 0.927 27 H 0.044 0.956 28 H 0.094 0.906 29 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.984 12.612 -0.403 12.657 hybrid contribution -0.532 -0.882 0.038 1.031 sum -1.517 11.730 -0.365 11.833 Atomic orbital electron populations 1.20331 0.85124 1.03976 1.03614 1.20534 0.99513 0.84784 1.09379 1.66235 1.06049 1.30566 1.15452 1.28979 0.95596 1.02603 1.05875 1.85151 1.02297 1.00121 1.68262 1.23764 0.98293 0.89788 1.11306 1.43174 1.11562 1.00855 1.71531 1.22192 0.86350 0.88239 0.72891 1.90489 1.17073 1.85079 1.48936 1.18806 0.96787 0.85312 0.97839 0.93039 1.21626 0.97476 1.03507 0.95632 1.21270 0.92889 0.91126 1.51539 0.92833 1.25552 0.98104 0.99578 0.94446 1.69937 1.19248 1.14943 1.50646 0.85540 0.79622 0.78744 0.77973 1.20299 1.20140 1.20089 0.89870 0.89746 0.90155 0.75353 0.73050 0.92722 0.95563 0.90554 0.92484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.50 10.07 71.23 0.72 -0.78 15 2 C -0.01 -0.19 6.77 41.67 0.28 0.09 15 3 N -0.47 -13.57 10.53 -191.08 -2.01 -15.59 15 4 C -0.03 -0.83 12.21 130.67 1.60 0.77 15 5 S 0.19 6.08 20.47 -56.49 -1.16 4.92 15 6 C -0.01 -0.44 7.18 82.53 0.59 0.16 15 7 N -0.62 -21.10 5.29 -305.83 -1.62 -22.72 15 8 C 0.51 22.16 7.12 87.66 0.62 22.78 15 9 O -0.54 -26.26 13.09 -3.11 -0.04 -26.31 15 10 C 0.03 1.59 2.64 -12.29 -0.03 1.56 15 11 H 0.05 2.49 8.14 -2.39 -0.02 2.47 15 12 C -0.12 -5.29 8.86 71.98 0.64 -4.65 15 13 C -0.53 -29.08 8.37 25.60 0.21 -28.87 15 14 H 0.05 3.14 6.75 -2.91 -0.02 3.12 15 15 C 0.02 1.23 5.30 84.66 0.45 1.68 15 16 N -0.91 -48.86 11.32 21.45 0.24 -48.62 15 17 Si 0.96 43.35 29.54 68.60 2.03 45.38 15 18 H -0.28 -12.87 7.11 99.48 0.71 -12.16 15 19 H -0.28 -12.12 7.11 99.48 0.71 -11.41 15 20 H -0.28 -12.07 7.11 99.48 0.71 -11.37 15 21 H 0.08 1.55 8.14 -2.39 -0.02 1.53 15 22 H 0.08 1.62 8.14 -2.39 -0.02 1.60 15 23 H 0.08 1.45 7.21 -2.39 -0.02 1.43 15 24 H 0.23 3.83 8.06 -2.91 -0.02 3.81 15 25 H 0.43 11.67 7.02 -92.71 -0.65 11.02 15 26 H 0.05 1.82 7.55 -2.39 -0.02 1.80 15 27 H 0.03 1.12 8.14 -2.39 -0.02 1.10 15 28 H 0.08 3.62 6.07 -2.39 -0.01 3.61 15 29 H 0.27 13.55 8.31 -92.70 -0.77 12.78 15 Total: -1.00 -63.91 263.63 3.05 -60.85 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: 0.53 Total: 9.35 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: 5.08 Total: -7.27 kcal Atomic # 7 Polarization: -83.54 SS G_CDS: -3.39 Total: -86.92 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.04 Total: -26.31 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 16 Polarization: 6.08 SS G_CDS: -1.16 Total: 4.92 kcal Total: -63.91 3.05 -60.85 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597387026.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.040 kcal (2) G-P(sol) polarization free energy of solvation -63.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds